Diff of the two buildlogs: -- --- b1/build.log 2023-05-18 15:17:05.424078995 +0000 +++ b2/build.log 2023-05-18 15:21:34.680277117 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jun 19 09:35:35 -12 2024 -I: pbuilder-time-stamp: 1718832935 +I: Current time: Fri May 19 05:17:08 +14 2023 +I: pbuilder-time-stamp: 1684423028 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./quorum_1.1.1.orig.tar.gz] I: copying [./quorum_1.1.1-7.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Jul 24 19:41:06 2022 -12 +gpgv: Signature made Mon Jul 25 21:41:06 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -28,52 +28,84 @@ dpkg-source: info: applying gcc-12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13167/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18576/tmp/hooks/D01_modify_environment starting +debug: Running on codethink16-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 19 05:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18576/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18576/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13167' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=18576 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/pbuilderrc_OJPZ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/b1 --logfile b1/build.log quorum_1.1.1-7.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/pbuilderrc_smOi --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/b2 --logfile b2/build.log --extrapackages usrmerge quorum_1.1.1-7.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink13-arm64 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 18 04:48 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/13167/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 18 00:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/18576/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -184,7 +216,7 @@ Get: 65 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 yaggo all 1.5.10-6 [21.2 kB] -Fetched 29.4 MB in 3s (8949 kB/s) +Fetched 29.4 MB in 2s (12.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -473,8 +505,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/quorum-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../quorum_1.1.1-7_source.changes +I: user script /srv/workspace/pbuilder/18576/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/18576/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/quorum-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../quorum_1.1.1-7_source.changes dpkg-buildpackage: info: source package quorum dpkg-buildpackage: info: source version 1.1.1-7 dpkg-buildpackage: info: source distribution unstable @@ -655,16 +696,16 @@ make[2]: Entering directory '/build/quorum-1.1.1' g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/error_correct_reads.o src/error_correct_reads.cc g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/err_log.o src/err_log.cc -/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o quorum_error_correct_reads src/error_correct_reads.o src/err_log.o -ljellyfish-2.0 -lpthread -lrt -lpthread +/bin/sh ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o quorum_error_correct_reads src/error_correct_reads.o src/err_log.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o quorum_error_correct_reads src/error_correct_reads.o src/err_log.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/create_database.o src/create_database.cc -/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o quorum_create_database src/create_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread +/bin/sh ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o quorum_create_database src/create_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o quorum_create_database src/create_database.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/merge_mate_pairs.o src/merge_mate_pairs.cc -/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o merge_mate_pairs src/merge_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread +/bin/sh ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o merge_mate_pairs src/merge_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o merge_mate_pairs src/merge_mate_pairs.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/split_mate_pairs.o src/split_mate_pairs.cc -/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o split_mate_pairs src/split_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread +/bin/sh ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o split_mate_pairs src/split_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o split_mate_pairs src/split_mate_pairs.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread sed -e 's|[@]JELLYFISH[@]|/usr/bin/jellyfish|g' -e 's|[@]bindir[@]|/build/quorum-1.1.1|g' -e 's|[@]JF_LIB_PATH[@]||g' -e 's|[@]PACKAGE_VERSION[@]|1.1.1|g' -e 's|[@]JELLYFISH_VERSION[@]|2.3.0|g' < src/quorum.in > quorum && chmod a+x quorum mkdir -p data; /usr/bin/jellyfish count -m 24 -s 5k -C -t 10 -o data/adapter.jf data/adapter.fa @@ -678,29 +719,29 @@ make all_tests query_mer_database histo_mer_database libgtest.la libgtest_main.la make[3]: Entering directory '/build/quorum-1.1.1' g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/all_tests-test_mer_database.o `test -f 'unit_tests/test_mer_database.cc' || echo './'`unit_tests/test_mer_database.cc -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/gtest/src/libgtest_main_la-gtest_main.lo `test -f 'unit_tests/gtest/src/gtest_main.cc' || echo './'`unit_tests/gtest/src/gtest_main.cc +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/gtest/src/libgtest_main_la-gtest_main.lo `test -f 'unit_tests/gtest/src/gtest_main.cc' || echo './'`unit_tests/gtest/src/gtest_main.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest_main.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest_main.cc -o unit_tests/gtest/src/libgtest_main_la-gtest_main.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/gtest/src/libgtest_la-gtest-all.lo `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc +/bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/gtest/src/libgtest_la-gtest-all.lo `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest-all.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest-all.cc -o unit_tests/gtest/src/libgtest_la-gtest-all.o >/dev/null 2>&1 -/bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o libgtest.la unit_tests/gtest/src/libgtest_la-gtest-all.lo -lrt -lpthread +/bin/sh ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o libgtest.la unit_tests/gtest/src/libgtest_la-gtest-all.lo -lrt -lpthread libtool: link: ar cr .libs/libgtest.a unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o libtool: link: ranlib .libs/libgtest.a libtool: link: ( cd ".libs" && rm -f "libgtest.la" && ln -s "../libgtest.la" "libgtest.la" ) -/bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o libgtest_main.la unit_tests/gtest/src/libgtest_main_la-gtest_main.lo libgtest.la -lrt -lpthread +/bin/sh ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o libgtest_main.la unit_tests/gtest/src/libgtest_main_la-gtest_main.lo libgtest.la -lrt -lpthread libtool: link: (cd .libs/libgtest_main.lax/libgtest.a && ar x "/build/quorum-1.1.1/./.libs/libgtest.a") libtool: link: ar cr .libs/libgtest_main.a unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o .libs/libgtest_main.lax/libgtest.a/libgtest_la-gtest-all.o libtool: link: ranlib .libs/libgtest_main.a libtool: link: rm -fr .libs/libgtest_main.lax libtool: link: ( cd ".libs" && rm -f "libgtest_main.la" && ln -s "../libgtest_main.la" "libgtest_main.la" ) -/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o all_tests unit_tests/all_tests-test_mer_database.o libgtest_main.la -ljellyfish-2.0 -lpthread -lrt -lpthread +/bin/sh ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o all_tests unit_tests/all_tests-test_mer_database.o libgtest_main.la -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o all_tests unit_tests/all_tests-test_mer_database.o ./.libs/libgtest_main.a /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/query_mer_database.o src/query_mer_database.cc -/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o query_mer_database src/query_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread +/bin/sh ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o query_mer_database src/query_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o query_mer_database src/query_mer_database.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/histo_mer_database.o src/histo_mer_database.cc -/bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o histo_mer_database src/histo_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread +/bin/sh ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o histo_mer_database src/histo_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o histo_mer_database src/histo_mer_database.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread make[3]: 'libgtest.la' is up to date. make[3]: 'libgtest_main.la' is up to date. @@ -734,7 +775,7 @@ make[2]: Entering directory '/build/quorum-1.1.1' make[3]: Entering directory '/build/quorum-1.1.1' /usr/bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/bin' - /bin/bash ./libtool --mode=install /usr/bin/install -c quorum_error_correct_reads quorum_create_database merge_mate_pairs split_mate_pairs '/build/quorum-1.1.1/debian/quorum/usr/bin' + /bin/sh ./libtool --mode=install /usr/bin/install -c quorum_error_correct_reads quorum_create_database merge_mate_pairs split_mate_pairs '/build/quorum-1.1.1/debian/quorum/usr/bin' libtool: install: /usr/bin/install -c quorum_error_correct_reads /build/quorum-1.1.1/debian/quorum/usr/bin/quorum_error_correct_reads libtool: install: /usr/bin/install -c quorum_create_database /build/quorum-1.1.1/debian/quorum/usr/bin/quorum_create_database libtool: install: /usr/bin/install -c merge_mate_pairs /build/quorum-1.1.1/debian/quorum/usr/bin/merge_mate_pairs @@ -782,12 +823,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/18576/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18576/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13167 and its subdirectories -I: Current time: Wed Jun 19 09:40:04 -12 2024 -I: pbuilder-time-stamp: 1718833204 +I: removing directory /srv/workspace/pbuilder/18576 and its subdirectories +I: Current time: Fri May 19 05:21:33 +14 2023 +I: pbuilder-time-stamp: 1684423293