Diff of the two buildlogs: -- --- b1/build.log 2023-04-23 16:49:48.281654267 +0000 +++ b2/build.log 2023-04-23 16:51:38.484770005 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 25 11:11:39 -12 2024 -I: pbuilder-time-stamp: 1716678699 +I: Current time: Mon Apr 24 06:49:49 +14 2023 +I: pbuilder-time-stamp: 1682268589 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./barclay_4.1.0+dfsg.orig.tar.xz] I: copying [./barclay_4.1.0+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Nov 27 05:29:32 2022 -12 +gpgv: Signature made Mon Nov 28 07:29:32 2022 +14 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./barclay_4.1.0+dfsg-1.dsc: no acceptable signature found @@ -32,137 +32,169 @@ dpkg-source: info: applying ignore_flaky_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/9319/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/28690/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 24 06:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/28690/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/28690/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='df273ed808c143feb55b16cb1475a5b8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='9319' - PS1='# ' - PS2='> ' + INVOCATION_ID=a972f528f2a94342bbfbad2b08a831ba + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=28690 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RWXNdrLZ/pbuilderrc_cSgr --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RWXNdrLZ/b1 --logfile b1/build.log barclay_4.1.0+dfsg-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RWXNdrLZ/pbuilderrc_Z0HM --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RWXNdrLZ/b2 --logfile b2/build.log --extrapackages usrmerge barclay_4.1.0+dfsg-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 - -rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown - -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp - -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash - -rwxr-xr-x 1 root root 137160 Sep 20 2022 date - -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd - -rwxr-xr-x 1 root root 108940 Sep 20 2022 df - -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir - -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 34664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln - -rwxr-xr-x 1 root root 55600 Mar 22 2023 login - -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls - -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 63016 Mar 22 2023 more - -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount - -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash - -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm - -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty - -rwsr-xr-x 1 root root 83492 Mar 22 2023 su - -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync - -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar - -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch - -rwxr-xr-x 1 root root 34664 Sep 20 2022 true - -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount - -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/9319/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1408088 Feb 13 10:21 bash + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown + -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp + -rwxr-xr-x 1 root root 136916 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 137160 Sep 21 2022 date + -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd + -rwxr-xr-x 1 root root 108940 Sep 21 2022 df + -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir + -rwxr-xr-x 1 root root 87760 Mar 24 00:20 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 34664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 84272 Mar 24 00:20 findmnt + -rwsr-xr-x 1 root root 30240 Mar 23 22:38 fusermount + -rwxr-xr-x 1 root root 218680 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 21916 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln + -rwxr-xr-x 1 root root 55600 Mar 24 01:43 login + -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls + -rwxr-xr-x 1 root root 214568 Mar 24 00:20 lsblk + -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 63016 Mar 24 00:20 more + -rwsr-xr-x 1 root root 58912 Mar 24 00:20 mount + -rwxr-xr-x 1 root root 13856 Mar 24 00:20 mountpoint + -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 10:21 rbash -> bash + -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm + -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 22308 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 133224 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Apr 24 06:49 sh -> /bin/bash + -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty + -rwsr-xr-x 1 root root 83492 Mar 24 00:20 su + -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync + -rwxr-xr-x 1 root root 598456 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 13860 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch + -rwxr-xr-x 1 root root 34664 Sep 21 2022 true + -rwxr-xr-x 1 root root 17892 Mar 23 22:38 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Mar 24 00:20 umount + -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 71216 Mar 24 00:20 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/28690/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -485,7 +517,7 @@ Get: 261 http://deb.debian.org/debian bookworm/main i386 libmongodb-java all 3.6.3-2 [1901 kB] Get: 262 http://deb.debian.org/debian bookworm/main i386 liblog4j2-java all 2.19.0-2 [2310 kB] Get: 263 http://deb.debian.org/debian bookworm/main i386 libmockito-java all 2.23.0-2 [479 kB] -Fetched 504 MB in 7s (75.5 MB/s) +Fetched 504 MB in 11s (47.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) @@ -1740,8 +1772,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/barclay-4.1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../barclay_4.1.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/28690/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/28690/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/barclay-4.1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../barclay_4.1.0+dfsg-1_source.changes dpkg-buildpackage: info: source package barclay dpkg-buildpackage: info: source version 4.1.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1802,7 +1845,7 @@ dh_auto_build -- jar mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=16 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=7 jar openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) @@ -1810,18 +1853,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/barclay-4.1.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.671 secs. -The client will now receive all logging from the daemon (pid: 16387). The daemon log file: /build/barclay-4.1.0+dfsg/.gradle/daemon/4.4.1/daemon-16387.out.log +An attempt to start the daemon took 1.082 secs. +The client will now receive all logging from the daemon (pid: 3847). The daemon log file: /build/barclay-4.1.0+dfsg/.gradle/daemon/4.4.1/daemon-3847.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 16 worker leases. -Creating new cache for fileHashes, path /build/barclay-4.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b766ce -Creating new cache for resourceHashesCache, path /build/barclay-4.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b766ce -Creating new cache for fileHashes, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@885573 +Using 7 worker leases. +Creating new cache for fileHashes, path /build/barclay-4.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@8bd73f +Creating new cache for resourceHashesCache, path /build/barclay-4.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@8bd73f +Creating new cache for fileHashes, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@137ecc7 Starting Build Compiling initialization script '/build/barclay-4.1.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/barclay-4.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@14a6c00 +Creating new cache for metadata-1.1/results, path /build/barclay-4.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1fcc131 Compiling initialization script '/build/barclay-4.1.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/barclay-4.1.0+dfsg/settings.gradle'. Settings file not found (/build/barclay-4.1.0+dfsg/settings.gradle) @@ -1840,15 +1883,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@10d0098 +Creating new cache for annotation-processors, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@b8ca15 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@885573 -Creating new cache for taskHistory, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@428d5c -Creating new cache for outputFiles, path /build/barclay-4.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@12b244c -:compileJava (Thread[Task worker for ':' Thread 5,5,main]) started. +Creating new cache for resourceHashesCache, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@137ecc7 +Creating new cache for taskHistory, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1376372 +Creating new cache for outputFiles, path /build/barclay-4.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@61351 +:compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.003 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/barclay-4.1.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@f39942 +Putting task artifact state for task ':compileJava' into context took 0.005 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/barclay-4.1.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f26da Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian @@ -1861,7 +1904,7 @@ Replacing org.freemarker:freemarker:jar:2.3.30 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian -Up-to-date check for task ':compileJava' took 0.96 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 1.483 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. @@ -1877,32 +1920,32 @@ .map(line -> WordUtils.wrap(line, width)) ^ 3 warnings -:compileJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 2.584 secs. -:processResources (Thread[Task worker for ':' Thread 5,5,main]) started. +:compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 4.575 secs. +:processResources (Thread[Task worker for ':' Thread 3,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Up-to-date check for task ':processResources' took 0.007 secs. It is not up-to-date because: No history is available. -:processResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.026 secs. -:classes (Thread[Task worker for ':' Thread 5,5,main]) started. +:processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.042 secs. +:classes (Thread[Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) started. +:classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. +:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/barclay-4.1.0+dfsg/build/debian/barclay.pom -:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.026 secs. -:jar (Thread[Task worker for ':' Thread 5,5,main]) started. +:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.043 secs. +:jar (Thread[Task worker for ':' Thread 3,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.005 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.011 secs. It is not up-to-date because: No history is available. -:jar (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.049 secs. +:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.099 secs. -BUILD SUCCESSFUL in 6s +BUILD SUCCESSFUL in 11s 4 actionable tasks: 4 executed make[1]: Leaving directory '/build/barclay-4.1.0+dfsg' jh_build -O--buildsystem=gradle @@ -1914,7 +1957,7 @@ LC_ALL=C.UTF-8 dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=16 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=7 test openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) @@ -1922,17 +1965,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/barclay-4.1.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.656 secs. -The client will now receive all logging from the daemon (pid: 16637). The daemon log file: /build/barclay-4.1.0+dfsg/.gradle/daemon/4.4.1/daemon-16637.out.log +An attempt to start the daemon took 1.073 secs. +The client will now receive all logging from the daemon (pid: 4050). The daemon log file: /build/barclay-4.1.0+dfsg/.gradle/daemon/4.4.1/daemon-4050.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 16 worker leases. -Creating new cache for fileHashes, path /build/barclay-4.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1dbc588 -Creating new cache for resourceHashesCache, path /build/barclay-4.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1dbc588 -Creating new cache for fileHashes, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@176d283 +Using 7 worker leases. +Creating new cache for fileHashes, path /build/barclay-4.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@18d329 +Creating new cache for resourceHashesCache, path /build/barclay-4.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@18d329 +Creating new cache for fileHashes, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3cc552 Starting Build -Creating new cache for metadata-1.1/results, path /build/barclay-4.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@4440fe +Creating new cache for metadata-1.1/results, path /build/barclay-4.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a1fa96 Settings evaluated using settings file '/build/barclay-4.1.0+dfsg/settings.gradle'. Settings file not found (/build/barclay-4.1.0+dfsg/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'barclay' instead of the name of the root directory 'barclay-4.1.0+dfsg' @@ -1948,15 +1991,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@155db15 +Creating new cache for annotation-processors, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@ee769d Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@176d283 -Creating new cache for taskHistory, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@fd354e -Creating new cache for outputFiles, path /build/barclay-4.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d0c9bf -:compileJava (Thread[Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3cc552 +Creating new cache for taskHistory, path /build/barclay-4.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@b33e58 +Creating new cache for outputFiles, path /build/barclay-4.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@158b826 +:compileJava (Thread[Daemon worker,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.003 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/barclay-4.1.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1cd24a4 +Putting task artifact state for task ':compileJava' into context took 0.005 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/barclay-4.1.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@384cbd Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian @@ -1969,21 +2012,21 @@ Replacing org.freemarker:freemarker:jar:2.3.30 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian -Skipping task ':compileJava' as it is up-to-date (took 0.297 secs). +Skipping task ':compileJava' as it is up-to-date (took 0.476 secs). :compileJava UP-TO-DATE -:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.322 secs. -:processResources (Thread[Task worker for ':',5,main]) started. +:compileJava (Thread[Daemon worker,5,main]) completed. Took 0.514 secs. +:processResources (Thread[Daemon worker,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.007 secs). +Skipping task ':processResources' as it is up-to-date (took 0.01 secs). :processResources UP-TO-DATE -:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.01 secs. -:classes (Thread[Task worker for ':',5,main]) started. +:processResources (Thread[Daemon worker,5,main]) completed. Took 0.014 secs. +:classes (Thread[Daemon worker,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[Task worker for ':',5,main]) started. +:classes (Thread[Daemon worker,5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[Daemon worker,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Passing through org.testng:testng:jar:debian @@ -1998,7 +2041,7 @@ Passing through net.bytebuddy:byte-buddy-dep:jar:debian Passing through org.ow2.asm:asm:jar:debian Passing through org.ow2.asm:asm-commons:jar:debian -Up-to-date check for task ':compileTestJava' took 1.472 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 1.883 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. @@ -2019,59 +2062,59 @@ { new Object() { @Argument(optional=false) Integer arg = new Integer(27); }, "arg", true, "27" }, ^ 4 warnings -:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 3.137 secs. -:processTestResources (Thread[Task worker for ':',5,main]) started. +:compileTestJava (Thread[Daemon worker,5,main]) completed. Took 4.512 secs. +:processTestResources (Thread[Daemon worker,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -Up-to-date check for task ':processTestResources' took 0.024 secs. It is not up-to-date because: +Up-to-date check for task ':processTestResources' took 0.017 secs. It is not up-to-date because: No history is available. -:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.056 secs. -:testClasses (Thread[Task worker for ':',5,main]) started. +:processTestResources (Thread[Daemon worker,5,main]) completed. Took 0.066 secs. +:testClasses (Thread[Daemon worker,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. -:test (Thread[Task worker for ':',5,main]) started. +:testClasses (Thread[Daemon worker,5,main]) completed. Took 0.0 secs. +:test (Thread[Daemon worker,5,main]) started. :test -Putting task artifact state for task ':test' into context took 0.0 secs. -Up-to-date check for task ':test' took 0.535 secs. It is not up-to-date because: +Putting task artifact state for task ':test' into context took 0.001 secs. +Up-to-date check for task ':test' took 0.879 secs. It is not up-to-date because: Task.upToDateWhen is false. -Starting process 'Gradle Test Executor 1'. Working directory: /build/barclay-4.1.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath17233333554838117471txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/barclay-4.1.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath12206980065433028753txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. -Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@1c9b82b, [], /tmp/enabledExpansion17475991975344582367.args, [Ljava.lang.String;@17810d0, [Ljava.lang.String;@d34ebb, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@1c4eb41, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion6017020575080260105.args, [Ljava.lang.String;@17810d0, [Ljava.lang.String;@2a98a6, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@a7240a, [], /tmp/enabledExpansion9590556663985338144.list, [Ljava.lang.String;@17810d0, [Ljava.lang.String;@18c9b75, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@165793e, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion4472131863682402640.list, [Ljava.lang.String;@17810d0, [Ljava.lang.String;@1bb52d, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@1bee7ec, [], /tmp/enabledExpansion4095689130911823904.args, [Ljava.lang.String;@17810d0, [Ljava.lang.String;@11f5d3a, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@101f2d5, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion6611073123818431724.args, [Ljava.lang.String;@17810d0, [Ljava.lang.String;@18b70c0, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@1d8cc9b, [], /tmp/enabledExpansion4353074801645113554.list, [Ljava.lang.String;@17810d0, [Ljava.lang.String;@6d0f8, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@1e6555a, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion13070556422282676235.list, [Ljava.lang.String;@17810d0, [Ljava.lang.String;@8619a8, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@9fd4df, [], [Ljava.lang.String;@968802, [Ljava.lang.String;@eda8c2, [Ljava.lang.String;@a0f5f1, [Ljava.lang.String;@5fed16)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6b35f5, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@968802, [Ljava.lang.String;@eda8c2, [Ljava.lang.String;@e58b6c, [Ljava.lang.String;@8a4f3b)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@1698c00, [], /tmp/enabledExpansion7884908309905680575.args, [Ljava.lang.String;@f32eba, [Ljava.lang.String;@d6c3ef, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@496b8d, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion8485879351863226884.args, [Ljava.lang.String;@f32eba, [Ljava.lang.String;@1e993be, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@41ae2, [], /tmp/enabledExpansion14219770454265202634.list, [Ljava.lang.String;@f32eba, [Ljava.lang.String;@110ba7f, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@157dd86, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion4212809038411157076.list, [Ljava.lang.String;@f32eba, [Ljava.lang.String;@196189f, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@78265d, [], /tmp/enabledExpansion5824888809079340685.args, [Ljava.lang.String;@f32eba, [Ljava.lang.String;@15c5ce6, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@68e346, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion7622158766012203614.args, [Ljava.lang.String;@f32eba, [Ljava.lang.String;@1490351, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@1c6d085, [], /tmp/enabledExpansion1934255308785656376.list, [Ljava.lang.String;@f32eba, [Ljava.lang.String;@ae0aad, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@335f3c, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion17499683058264708191.list, [Ljava.lang.String;@f32eba, [Ljava.lang.String;@a00900, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@7bd93f, [], [Ljava.lang.String;@17e8e6f, [Ljava.lang.String;@1da6089, [Ljava.lang.String;@592016, [Ljava.lang.String;@dba903)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@67097d, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@17e8e6f, [Ljava.lang.String;@1da6089, [Ljava.lang.String;@9af067, [Ljava.lang.String;@12d0410)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionThatCannotBeAutoInitialized(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testGetCommandLineWithExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@f698c3, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@f698c3, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@b812ed, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@b812ed, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@eb47f6, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@eb47f6, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@167c056, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@6ff507, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@1ed4742, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@1ed4742, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@119aa23, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@119aa23, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@3c80d5, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@3c80d5, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@1e6719d, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@7330e1, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testPositionalCollectionFromExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testRejectNonCollectionFileExpansionSuppression(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@1bcfdb3, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@1bcfdb3, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@3ae92a, [Ljava.lang.String;@1c45220)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@9d95e4, [Ljava.lang.String;@1dd606)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@12f6da3, [Ljava.lang.String;@1a897a7)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@1d87682, [Ljava.lang.String;@e55)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@b56261, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@b56261, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@10299c5, [Ljava.lang.String;@12f6837)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@691c51, [Ljava.lang.String;@1d99313)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@15c4145, [Ljava.lang.String;@109459b)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@265d80, [Ljava.lang.String;@258bf0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAbbreviationsAreRejected(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAdvancedArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgCollectionNotInitialized(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@133e35e, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@1effb9, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@12a9f16, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@fcc6db, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@14ea772, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@102276e, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentCollection(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentNameCollision(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentUseClash(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2090,11 +2133,11 @@ Running Test: Test method testEnumSet(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testEnumSetNegative(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testExperimentalFeatureUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@c260f, [Ljava.lang.String;@1935e2d)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@fe240, [Ljava.lang.String;@91ae51)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@7f657a, [Ljava.lang.String;@5410ee)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@10c1aa, [Ljava.lang.String;@15bab08)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@a0347, [Ljava.lang.String;@115b4a3)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@109e823, [Ljava.lang.String;@1b70ac8)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@c21b68, [Ljava.lang.String;@13e9b31)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@1b32d7a, [Ljava.lang.String;@5e067c)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@761001, [Ljava.lang.String;@1817091)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@1d36512, [Ljava.lang.String;@1eac3b0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagNoArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagWithPositionalFollowing(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagsWithArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2207,13 +2250,13 @@ Running Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOnlyPrintNameOnce(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOptionalOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@14543e4)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@144110)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@993c71)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@548015)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@e92c05)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@1025363)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@1b70c43)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@537ce1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@1c37d54)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@ed70de)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@b7ed32)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@162b4e6)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@f196ef)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@15b407b)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositionalDeprecated(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositive(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPrivateArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2221,9 +2264,9 @@ Running Test: Test method testRequiredOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@d95a59)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@16fcc4c)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@1428ad2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@c8730b)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@caf8d1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@ea7660)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testVersionSpecialFlag(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2234,19 +2277,19 @@ Version:null Running Test: Test method testWithBoundariesArgumentsForNoNumeric(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithDoubleBoundariesArgumentsForInteger(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@1793a03, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@e85fe2, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@1809ac8, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@16442a1, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@c518b, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@f0991f, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@936d4e, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@c04158, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@4b8317, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@1de5ec9, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@4bc238, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@1de98bd, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@136029c, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@168d0b6, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@1b1466e, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@10419a7, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@128da8e, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@1466569, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@1336308, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) -Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@1a9c47, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@f5b54b, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@ac8a1e, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[0](TestPluginWithRequiredArg, requiredStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[1](TestPluginWithOptionalArg, optionalStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDefaultIncludePluginClass[0](class org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest$TestPluginBase, true)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) @@ -2726,401 +2769,401 @@ Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@16096ef, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@1b67c7, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@b3056a, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false) STANDARD_ERROR ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@b3056a, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@3d1d1d, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false) STANDARD_ERROR ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1ab6526, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@116e9cd, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y +Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@182cf40, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@132ad1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@182cf40, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N +Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1285bc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@1ebb938, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNonASCIIAccept(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) @@ -4275,132 +4318,137 @@ Running Test: Test method testUsageWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositionalWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@5f5fb2, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@1be8077, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@14afcf1, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@1015639, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@6ab3be, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@1fd89c6, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@1806409, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@19e5809, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@1bd9dee, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@a1d618, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@2bb1cc, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@1d6bfa0, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@19cfea8, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@1dad50c, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@1f9d6f8, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@58866d, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@7ec1d2, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@18ce80a, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@e8069e, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@50c096, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@12f7fe3, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@53e893, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@1162d7a, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@224347, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@182dff9, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@13622f0, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@166619f, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@158f064, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@119fb18, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@10da1ef, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@3516da, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@7066da, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@1f384a8, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@160b8b1, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@1409f43, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@198863c, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@1ef7b82, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@efaeab, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@1914572, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@7f789e, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@98b635, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@4c3e2d, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@1d36bec, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@1cc99a7, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@1cdbc1e, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@15e3aa6, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@176a87b, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@1d84494, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@49acf6, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@a6e553, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@6d854f, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@1e07bd3, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@4057e5, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@bc8163, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@fa8d5e, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@c563f6, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@c6312c, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@17b991f, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@bb056c, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@194aa8c, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@3d7135, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@15d828d, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@281069, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@1b1cdc, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@de13eb, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@8ea7eb, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@155f50a, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@1cfe51e, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@1cc88e4, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@d719c9, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@865bdf, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@1541c06, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@157c015, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@18525bc, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@62d1ab, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@1eec59a, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@646a6b, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@17ec51c, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElementsGreaterThanMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testNonCollection(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method recognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) Running Test: Test method unrecognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) -Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@3a6de5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@1e0dba4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@ecac45)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@1d307ac)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@eef238)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@1bbb32e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@76f4e9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@1a68484)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@34a02c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@ac40be)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@1943bc4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@12ba759)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@fc6f53)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@3ee6b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@bb1b40)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@1860908)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@733d71)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@11045e0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@b7dc5d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@6dbf53)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@33caf9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@cd0f6c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@150c65c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@1649566)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@efb758)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@9693da)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@17c0add)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@12bd57a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@15efa25)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@11147e9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@4e926c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@2ae60b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@4ac4b3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@28ce87)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@1ad74)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@1ef09eb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@1d03fa3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@11a0845)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@1530a15)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@c8d5d0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@18b3476)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@14349ce)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@12441f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@68acd9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@1c22346)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@134be01)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@62f82f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@72846f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@1cd0ca1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@1d85364)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@f3310b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@18a8699)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@1ebc489)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@10f300e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@b5ae81)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@1a0eaf6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@12da10c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@7a067b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@aef53e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@1b5e3ee)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@fdd319, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@12cf2b0, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@dd6e88, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2f7479, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@14bd2b7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@c5abbb, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@74b1ee, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@12013c4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@24e8a9, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1aec4f7, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@15766be)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@17a0038, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@f3dc4d, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1169334)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@1c0487e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1597923, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1334567)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@1a1a328, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2e65fc, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1a81d10)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@104b28e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@337fcc, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2a977a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@1807f6, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@e85bfb, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@16f8a3a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@94bf45, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@49afc9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1ca8ce0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@1afe57e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@535d7d, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1079b92)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@4a5431, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1de5fba, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1552230)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@15bc18, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1b91e32, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1ae7b54)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@1ea8d4e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1415162, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@18d007)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@1f4181a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1673d1a, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@cb8544)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@16515b3, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@9f556e, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1dda4c5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@6b0723, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@8b78ef, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@fe277f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@f8244b, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@199fa74, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1b42696)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@1e26fa0, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@78f5dd, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1dff728)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@1280f06)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@17651c9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@ef897a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@1738fcc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@4b9176)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@198ceed)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@ca8967)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@b3008e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@1c0af6d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@140a6fb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@10d9b7e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@5301e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@9c1066)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@edae82)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@33aa67)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@1676115)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@b22672)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@b99f2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@13b2f67)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@8daece)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@a9f61d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@92c7af)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@4168e5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@5c4011)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@140abb4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@13fb7ea)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@f4a68b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@61d89f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@c1f78b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@164bf54)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@12d2058)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@9189c3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@eb34f6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@17e5350)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@12ca452)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@3d5cd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@288af2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@1e837e0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@68d903)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@164d6eb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@15c0407)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@15e266e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@828dd6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@1a0e24f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@1fa283d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@941e43)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@1ca8d7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@125ec8b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@1b95fdf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@d790b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@1c546c7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@1d55550)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@170c8b6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@1972c2c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@e5988f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@137a89d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@5b4c3a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@1ac239b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@1467c7b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@45a22c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@1262e8d, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@6f35e9, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@7f6aa, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@11fb0, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1d55566)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@5957fd, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1ea87ee, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@e304ac)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@199972f, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1a19c82, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1807d42)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@127e803, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1e7cadd, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@90443)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@f6352c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2fc809, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@15415b6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@159b370, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1b865ec, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@c0dddb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@d5f76b, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1df33ba, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@882af1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@18ed17b, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@195b1e9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@c5900b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@d7687e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@e2d698, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@bc39a5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@14c7db8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1c3df62, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1fb34ea)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@1090ded, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@c6a7ba, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@17dc3f1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@1c978e0, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@33cdce, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@b2721a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@6258cb, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@19f172d, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1cbddc0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@686b8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@41bd8f, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@66c62f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@e86ed9, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@a4c320, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1e61b23)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +WARNING: A terminally deprecated method in java.lang.System has been called +Gradle Test Executor 1 finished executing tests. +WARNING: System::setSecurityManager has been called by Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@197155c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@19d27f, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@c21a92)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@2f721c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@19fe7d1, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1683cd7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@fba9d5, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1202550, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@b1bee8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker Running Test: Test method testMixedTagCollectionArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +WARNING: System::setSecurityManager will be removed in a future release Running Test: Test method testMixedTaggedExpansionFile(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testTaggedScalarArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testNonNullDoesNotThrow(org.broadinstitute.barclay.utils.UtilsUnitTest) @@ -4487,20 +4535,15 @@ e f g, -1000)(org.broadinstitute.barclay.utils.UtilsUnitTest) -Gradle Test Executor 1 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release Results: SUCCESS (337 tests, 337 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.019 secs) into: /build/barclay-4.1.0+dfsg/build/test-results/test +Finished generating test XML results (0.043 secs) into: /build/barclay-4.1.0+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.03 secs) into: /build/barclay-4.1.0+dfsg/build/reports/tests/test -:test (Thread[Task worker for ':',5,main]) completed. Took 2.436 secs. +Finished generating test html results (0.04 secs) into: /build/barclay-4.1.0+dfsg/build/reports/tests/test +:test (Thread[Daemon worker,5,main]) completed. Took 3.815 secs. -BUILD SUCCESSFUL in 9s +BUILD SUCCESSFUL in 15s 5 actionable tasks: 3 executed, 2 up-to-date - rm -fr -- /tmp/dh-xdg-rundir-uo7mkw5n + rm -fr -- /tmp/dh-xdg-rundir-reB7eDrH make[1]: Leaving directory '/build/barclay-4.1.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4562,10 +4605,10 @@ rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/4.1.0/barclay-4.1.0.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/4.1.0/barclay-4.1.0.jar dh_link -plibbarclay-java /usr/share/javabarclay.jar usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar - rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/4.1.0/barclay-4.1.0.jar - ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/4.1.0/barclay-4.1.0.jar rm -f debian/libbarclay-java/usr/share/java/barclay.jar ln -s barclay-4.1.0.jar debian/libbarclay-java/usr/share/java/barclay.jar + rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/4.1.0/barclay-4.1.0.jar + ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/4.1.0/barclay-4.1.0.jar install -m0755 -d debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar @@ -4619,12 +4662,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/28690/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/28690/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/9319 and its subdirectories -I: Current time: Sat May 25 11:12:47 -12 2024 -I: pbuilder-time-stamp: 1716678767 +I: removing directory /srv/workspace/pbuilder/28690 and its subdirectories +I: Current time: Mon Apr 24 06:51:38 +14 2023 +I: pbuilder-time-stamp: 1682268698