Diff of the two buildlogs: -- --- b1/build.log 2021-08-20 01:54:39.410772471 +0000 +++ b2/build.log 2021-08-20 02:05:52.997765970 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Aug 19 13:42:53 -12 2021 -I: pbuilder-time-stamp: 1629423773 +I: Current time: Fri Aug 20 15:54:59 +14 2021 +I: pbuilder-time-stamp: 1629424499 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./hyphy_2.5.28+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.gP0NFLWT/trustedkeys.kbx': General error -gpgv: Signature made Tue Mar 16 20:41:39 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.dgcoR8RI/trustedkeys.kbx': General error +gpgv: Signature made Wed Mar 17 22:41:39 2021 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hyphy_2.5.28+dfsg-3.dsc @@ -30,135 +30,169 @@ dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/30229/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/932/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/932/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/932/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='c5015f9b9b0043f78664d840a107861c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='30229' - PS1='# ' - PS2='> ' + INVOCATION_ID=998331f070b6442e8dad24bcda3c8274 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=932 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.KFFncHN7kw/pbuilderrc_AtyA --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.KFFncHN7kw/b1 --logfile b1/build.log hyphy_2.5.28+dfsg-3.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.KFFncHN7kw/pbuilderrc_l4eD --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.KFFncHN7kw/b2 --logfile b2/build.log hyphy_2.5.28+dfsg-3.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt32a 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-4 (2021-08-03) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-arm64 #1 SMP Debian 5.10.46-4 (2021-08-03) aarch64 GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more - -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 13 21:26 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/30229/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Jul 29 09:09 more + -rwsr-xr-x 1 root root 34400 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 9824 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 20 15:55 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 15 23:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Jul 29 09:09 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 2021 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/932/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -316,7 +350,7 @@ Get: 105 http://deb.debian.org/debian bullseye/main armhf libssl-dev armhf 1.1.1k-1 [1606 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf mpi-default-dev armhf 1.13 [5476 B] Get: 107 http://deb.debian.org/debian bullseye/main armhf pkg-config armhf 0.29.2-1 [62.4 kB] -Fetched 48.2 MB in 5s (10.5 MB/s) +Fetched 48.2 MB in 4s (11.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -764,7 +798,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/hyphy-2.5.28+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hyphy_2.5.28+dfsg-3_source.changes +hostname: Name or service not known +I: Running cd /build/hyphy-2.5.28+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../hyphy_2.5.28+dfsg-3_source.changes dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.5.28+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -774,9 +809,9 @@ debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: ingresso nella directory «/build/hyphy-2.5.28+dfsg» dh_auto_clean -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: uscita dalla directory «/build/hyphy-2.5.28+dfsg» dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary @@ -784,7 +819,7 @@ dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: ingresso nella directory «/build/hyphy-2.5.28+dfsg» dh_auto_configure -- -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON .. -- The C compiler identification is GNU 10.2.1 @@ -827,9 +862,9 @@ -- Build files have been written to: /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: uscita dalla directory «/build/hyphy-2.5.28+dfsg» debian/rules override_dh_auto_build -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: ingresso nella directory «/build/hyphy-2.5.28+dfsg» # convert a few ISO-8859-1 files to address national-encoding set -e \ ; for file in res/TemplateBatchFiles/PARRIS.bf res/TemplateBatchFiles/TemplateModels/MEC.mdl res/TemplateBatchFiles/TemplateModels/models.lst \ @@ -837,30 +872,30 @@ ; mv "${file}.new" "${file}" \ ; done dh_auto_build -- MP MPI - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 -make[2]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 +make[2]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP -make[3]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 20 make -f CMakeFiles/Makefile2 CMakeFiles/MP.dir/all -make[4]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[4]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/depend -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» cd /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/hyphy.dir/DependInfo.cmake --color= Dependee "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/hyphy.dir/DependInfo.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/hyphy.dir/depend.internal". Dependee "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/hyphy.dir/depend.internal". Scanning dependencies of target hyphy -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/build -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' -[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o +make[5]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» [ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/_hyExecutionContext.cpp -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/associative_list.cpp +[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o [ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/alignment.cpp +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/associative_list.cpp [ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/avllist.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllist.cpp [ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o @@ -988,38 +1023,38 @@ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -O3 -std=c++14 -g CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/hyphy.dir/src/core/alignment.cpp.o CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o CMakeFiles/hyphy.dir/src/core/avllist.cpp.o CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o CMakeFiles/hyphy.dir/src/core/avllistx_iterator.cpp.o CMakeFiles/hyphy.dir/src/core/avllistxl.cpp.o CMakeFiles/hyphy.dir/src/core/avllistxl_iterator.cpp.o CMakeFiles/hyphy.dir/src/core/baseobj.cpp.o CMakeFiles/hyphy.dir/src/core/batchlan.cpp.o CMakeFiles/hyphy.dir/src/core/batchlan2.cpp.o CMakeFiles/hyphy.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/hyphy.dir/src/core/batchlanruntime.cpp.o CMakeFiles/hyphy.dir/src/core/calcnode.cpp.o CMakeFiles/hyphy.dir/src/core/category.cpp.o CMakeFiles/hyphy.dir/src/core/constant.cpp.o CMakeFiles/hyphy.dir/src/core/dataset.cpp.o CMakeFiles/hyphy.dir/src/core/dataset_filter.cpp.o CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o CMakeFiles/hyphy.dir/src/core/formula.cpp.o CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o CMakeFiles/hyphy.dir/src/core/fstring.cpp.o CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o CMakeFiles/hyphy.dir/src/core/global_things.cpp.o CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o CMakeFiles/hyphy.dir/src/core/likefunc.cpp.o CMakeFiles/hyphy.dir/src/core/likefunc2.cpp.o CMakeFiles/hyphy.dir/src/core/likefuncocl.cpp.o CMakeFiles/hyphy.dir/src/core/list.cpp.o CMakeFiles/hyphy.dir/src/core/mathobj.cpp.o CMakeFiles/hyphy.dir/src/core/matrix.cpp.o CMakeFiles/hyphy.dir/src/core/nexus.cpp.o CMakeFiles/hyphy.dir/src/core/ntuplestorage.cpp.o CMakeFiles/hyphy.dir/src/core/operation.cpp.o CMakeFiles/hyphy.dir/src/core/parser.cpp.o CMakeFiles/hyphy.dir/src/core/parser2.cpp.o CMakeFiles/hyphy.dir/src/core/polynoml.cpp.o CMakeFiles/hyphy.dir/src/core/simplelist.cpp.o CMakeFiles/hyphy.dir/src/core/site.cpp.o CMakeFiles/hyphy.dir/src/core/stack.cpp.o CMakeFiles/hyphy.dir/src/core/string_buffer.cpp.o CMakeFiles/hyphy.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/hyphy.dir/src/core/strings.cpp.o CMakeFiles/hyphy.dir/src/core/time_difference.cpp.o CMakeFiles/hyphy.dir/src/core/topology.cpp.o CMakeFiles/hyphy.dir/src/core/translation_table.cpp.o CMakeFiles/hyphy.dir/src/core/tree.cpp.o CMakeFiles/hyphy.dir/src/core/tree_evaluator.cpp.o CMakeFiles/hyphy.dir/src/core/tree_iterator.cpp.o CMakeFiles/hyphy.dir/src/core/trie.cpp.o CMakeFiles/hyphy.dir/src/core/trie_iterator.cpp.o CMakeFiles/hyphy.dir/src/core/variable.cpp.o CMakeFiles/hyphy.dir/src/core/variablecontainer.cpp.o CMakeFiles/hyphy.dir/src/core/vector.cpp.o CMakeFiles/hyphy.dir/src/new/bayesgraph.cpp.o CMakeFiles/hyphy.dir/src/new/bayesgraph2.cpp.o CMakeFiles/hyphy.dir/src/new/bgm.cpp.o CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o CMakeFiles/hyphy.dir/src/new/scfg.cpp.o CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/hyphy.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o CMakeFiles/hyphy.dir/src/mains/unix.cpp.o -o hyphy -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 -lgomp -lpthread mklink HYPHYMP -> hyphy ln -sf hyphy HYPHYMP -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» [100%] Built target hyphy make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/depend -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» cd /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/MP.dir/DependInfo.cmake --color= Dependee "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/MP.dir/DependInfo.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/MP.dir/depend.internal". Dependee "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/MP.dir/depend.internal". Scanning dependencies of target MP -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/build -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' -make[5]: Nothing to be done for 'CMakeFiles/MP.dir/build'. -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» +make[5]: Nessuna operazione da eseguire per «CMakeFiles/MP.dir/build». +make[5]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» [100%] Built target MP -make[4]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[4]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 -make[3]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/Makefile2 MPI -make[3]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 20 make -f CMakeFiles/Makefile2 CMakeFiles/MPI.dir/all -make[4]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[4]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/depend -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» cd /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/HYPHYMPI.dir/DependInfo.cmake --color= Dependee "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/HYPHYMPI.dir/DependInfo.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/HYPHYMPI.dir/depend.internal". Dependee "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/HYPHYMPI.dir/depend.internal". Scanning dependencies of target HYPHYMPI -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/build -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» [ 0%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/_hyExecutionContext.cpp [ 0%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o @@ -1030,10 +1065,10 @@ /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllist.cpp [ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllistx.cpp +[ 5%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllistx_iterator.cpp [ 10%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllistxl.cpp -[ 10%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllistx_iterator.cpp [ 10%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/avllistxl_iterator.cpp [ 10%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o @@ -1151,35 +1186,35 @@ [100%] Linking CXX executable HYPHYMPI /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYMPI.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -O3 -std=c++14 -pthread -g CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -o HYPHYMPI -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/openmpi/lib: -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so -lgomp -lpthread -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» [100%] Built target HYPHYMPI make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/depend -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» cd /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/MPI.dir/DependInfo.cmake --color= Dependee "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/MPI.dir/DependInfo.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/MPI.dir/depend.internal". Dependee "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/MPI.dir/depend.internal". Scanning dependencies of target MPI -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/build -make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' -make[5]: Nothing to be done for 'CMakeFiles/MPI.dir/build'. -make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[5]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» +make[5]: Nessuna operazione da eseguire per «CMakeFiles/MPI.dir/build». +make[5]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» [100%] Built target MPI -make[4]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[4]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 -make[3]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' -make[2]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[3]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» +make[2]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» +make[1]: uscita dalla directory «/build/hyphy-2.5.28+dfsg» debian/rules override_dh_auto_test -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: ingresso nella directory «/build/hyphy-2.5.28+dfsg» find "obj-arm-linux-gnueabihf/" \ -not -path "*/CMakeFiles/*" \ -type f,l \ -executable \ -exec cp -v '{}' . \; +'obj-arm-linux-gnueabihf/HYPHYMPI' -> './HYPHYMPI' 'obj-arm-linux-gnueabihf/HYPHYMP' -> './HYPHYMP' 'obj-arm-linux-gnueabihf/hyphy' -> './hyphy' -'obj-arm-linux-gnueabihf/HYPHYMPI' -> './HYPHYMPI' ./run_unit_tests.sh ./tests/hbltests/UnitTests/HBLCommands/Abs.bf ./tests/hbltests/UnitTests/HBLCommands/Add.bf @@ -1283,520 +1318,520 @@ ./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf ./tests/hbltests/UnitTests/HBLCommands/namespace.bf \n\n------------------------ALL TEST PASSED------------------------------------\n -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: uscita dalla directory «/build/hyphy-2.5.28+dfsg» create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/hyphy-2.5.28\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/hyphy-2.5.28\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[1]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[2]: ingresso nella directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» +make[2]: Nessuna operazione da eseguire per «preinstall». +make[2]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69 -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignShared.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearch.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BGM.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GateauxMR.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/categoryEcho.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relratioBootstrap.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestCladeMeans.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearch.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonModelCompare.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NeighborJoining.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/branchSwappingFunctions.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignShared.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_tipDater.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestCladeMeans.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanStopCodons.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/binomial.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GateauxMR.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relratioBootstrap.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doSPRSwap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LEISR.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestBranchDNDS.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanStopCodons.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LZ_Complexity.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/molclockBootstrap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ModelTest.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/UpperBound.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/simpleBootstrap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/binomial.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LHT.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/queryTree.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGIvL.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NeighborJoining.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NucModelCompare.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LZ_Complexity.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LEISR.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relrateBootstrap.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/branchSwappingFunctions.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/simpleBootstrap.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/molclockBootstrap.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ModelTest.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN84 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_RV -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/JC69 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN84 +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/T3P -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/T3P -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_RV --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/queryTree.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MGvsGY.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BGM.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LHT.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_tipDater.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/UpperBound.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestBranchDNDS.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonModelCompare.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doSPRSwap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relrateBootstrap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/stats.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/IOFunctions.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/function-loader.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/all-terms.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/random.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/all-terms.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/stats.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/parameters.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR-MutSel.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MSS.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/LG.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/HIV.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/WAG.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JTT.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/HIV.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrix2dict_aux.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/parameters.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MSS.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR-MutSel.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/function-loader.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/random.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGIvL.bf +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69 --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary --- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod +-- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/bin/hyphy -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Set runtime path of "/build/hyphy-2.5.28+dfsg/debian/tmp/usr/bin/HYPHYMPI" to "" -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf' +make[1]: uscita dalla directory «/build/hyphy-2.5.28+dfsg/obj-arm-linux-gnueabihf» debian/rules override_dh_install-arch -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: ingresso nella directory «/build/hyphy-2.5.28+dfsg» dh_install -a chrpath --delete obj-*/HYPHYMPI -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: uscita dalla directory «/build/hyphy-2.5.28+dfsg» debian/rules override_dh_install-indep -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: ingresso nella directory «/build/hyphy-2.5.28+dfsg» dh_install -i -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: uscita dalla directory «/build/hyphy-2.5.28+dfsg» debian/rules override_dh_installdocs-arch -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: ingresso nella directory «/build/hyphy-2.5.28+dfsg» dh_installdocs -a for news in debian/NEWS.Debian.* ; do \ pkg=`echo ${news} | sed 's/.*NEWS.Debian.//'` ; \ cp -a ${news} debian/${pkg}/usr/share/doc/${pkg}/NEWS.Debian ; \ done -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: uscita dalla directory «/build/hyphy-2.5.28+dfsg» debian/rules override_dh_installdocs-indep -make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' +make[1]: ingresso nella directory «/build/hyphy-2.5.28+dfsg» dh_installdocs -i -make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' +make[1]: uscita dalla directory «/build/hyphy-2.5.28+dfsg» dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake @@ -1812,17 +1847,17 @@ dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake -dpkg-shlibdeps: warning: debian/hyphy-pt/usr/bin/hyphy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/hyphy-mpi/usr/bin/HYPHYMPI contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/hyphy-pt/usr/bin/hyphy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.28+dfsg-3_armhf.deb'. -dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.28+dfsg-3_armhf.deb'. -dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.5.28+dfsg-3_all.deb'. -dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.28+dfsg-3_armhf.deb'. -dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.28+dfsg-3_armhf.deb'. +dpkg-deb: generazione del pacchetto "hyphy-pt" in "../hyphy-pt_2.5.28+dfsg-3_armhf.deb". +dpkg-deb: generazione del pacchetto "hyphy-mpi" in "../hyphy-mpi_2.5.28+dfsg-3_armhf.deb". +dpkg-deb: generazione del pacchetto "hyphy-common" in "../hyphy-common_2.5.28+dfsg-3_all.deb". +dpkg-deb: generazione del pacchetto "hyphy-pt-dbgsym" in "../hyphy-pt-dbgsym_2.5.28+dfsg-3_armhf.deb". +dpkg-deb: generazione del pacchetto "hyphy-mpi-dbgsym" in "../hyphy-mpi-dbgsym_2.5.28+dfsg-3_armhf.deb". dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../hyphy_2.5.28+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1830,12 +1865,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/932/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/932/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/30229 and its subdirectories -I: Current time: Thu Aug 19 13:54:33 -12 2021 -I: pbuilder-time-stamp: 1629424473 +I: removing directory /srv/workspace/pbuilder/932 and its subdirectories +I: Current time: Fri Aug 20 16:05:46 +14 2021 +I: pbuilder-time-stamp: 1629425146