Diff of the two buildlogs: -- --- b1/build.log 2021-07-14 10:47:33.129031864 +0000 +++ b2/build.log 2021-07-14 10:54:34.245159772 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Aug 16 05:09:45 -12 2022 -I: pbuilder-time-stamp: 1660669785 +I: Current time: Thu Jul 15 00:47:38 +14 2021 +I: pbuilder-time-stamp: 1626259658 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./minc-tools_2.3.00+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.VrCbo53q/trustedkeys.kbx': General error -gpgv: Signature made Tue Dec 8 00:22:53 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.FwOSMKEG/trustedkeys.kbx': General error +gpgv: Signature made Wed Dec 9 02:22:53 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -35,137 +35,171 @@ dpkg-source: info: applying fix-gcc10-build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/52775/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10294/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10294/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10294/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='e1f1906c935a415696e7a0878732c828' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='52775' - PS1='# ' - PS2='> ' + INVOCATION_ID=714586fd0ab444a293d98f0d69d09dc2 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10294 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/pbuilderrc_dnni --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/b1 --logfile b1/build.log minc-tools_2.3.00+dfsg-6.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/pbuilderrc_o2vQ --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/b2 --logfile b2/build.log --extrapackages usrmerge minc-tools_2.3.00+dfsg-6.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux I: ls -l /bin - total 5776 - -rwxr-xr-x 1 root root 1367848 Jun 21 2021 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Feb 7 2021 more - -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount - -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 15 03:48 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Feb 7 2021 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/52775/tmp/hooks/D02_print_environment finished + total 5796 + -rwxr-xr-x 1 root root 1367848 Jun 22 16:25 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more + -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:25 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 15 00:50 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 14 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/10294/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -347,7 +381,7 @@ Get: 126 http://deb.debian.org/debian bullseye/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 texlive-base all 2020.20210202-3 [20.8 MB] Get: 128 http://deb.debian.org/debian bullseye/main i386 texlive-latex-base all 2020.20210202-3 [1120 kB] -Fetched 87.2 MB in 1s (91.6 MB/s) +Fetched 87.2 MB in 20s (4374 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -895,8 +929,44 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1465 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 31703 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-6 dpkg-buildpackage: info: source distribution unstable @@ -1015,7 +1085,7 @@ -- Build files have been written to: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_auto_build - cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -1025,619 +1095,696 @@ make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend -make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend +make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend -make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend -make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend +make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend +make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend +make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend -make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color= -make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color= -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake" is newer than depender 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Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". 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Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample2.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/depend.internal". 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Scanning dependencies of target mincexample2 -Scanning dependencies of target mincblob -Scanning dependencies of target mincconcat Scanning dependencies of target mincexpand -Scanning dependencies of target minccmp -Scanning dependencies of target minc_modify_header -Scanning dependencies of target mincconvert -Scanning dependencies of target mincmorph -Scanning dependencies of target mincaverage -Scanning dependencies of target mincextract -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +Scanning dependencies of target mincblob make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +Scanning dependencies of target xfmconcat +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". +Scanning dependencies of target mincdump make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' 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'/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build -make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build -make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build +Scanning dependencies of target rawtominc make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". +make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build +Scanning dependencies of target minccmp make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +Scanning dependencies of target mincmorph make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/build -make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build -make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +Scanning dependencies of target mincextract make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 1%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 2%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o +make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build +[ 2%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o [ 3%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -[ 4%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o +[ 4%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o +[ 4%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample2.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccmp/minccmp.c -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu 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-fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c +[ 7%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincextract/mincextract.c +[ 7%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/mincmorph.c +[ 8%] Linking C executable mincexpand +[ 9%] Linking C executable xfmconcat +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexpand.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -o mincexpand -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 17%] Linking C executable worldtovoxel -[ 18%] Linking C executable xfmconcat -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/worldtovoxel.dir/link.txt --verbose=1 -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +[ 10%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c +[ 11%] Linking C executable mincexample2 +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 12%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c +[ 12%] Built target mincexpand +make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake --color= +[ 13%] Linking C executable minccmp +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/depend.internal". +Scanning dependencies of target minccopy +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 14%] Linking C executable mincextract +make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/build +[ 14%] Built target xfmconcat +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 15%] Linking C executable mincinfo +[ 16%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 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"/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/depend.internal". +[ 17%] Building C object progs/CMakeFiles/minccopy.dir/minccopy/minccopy.c.o +Scanning dependencies of target mincconvert +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccopy/minccopy.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 17%] Linking C executable mincblob +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 +[ 18%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconvert/mincconvert.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 18%] Built target mincexample2 +make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal". +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +Scanning dependencies of target minc_modify_header +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build [ 19%] Linking C executable minccopy cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 20%] Linking C executable mincconvert +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconvert.dir/link.txt --verbose=1 +[ 20%] Built target mincextract /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". +make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend +[ 21%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 22%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minc_modify_header/minc_modify_header.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". +Scanning dependencies of target mincstats make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 22%] Built target mincinfo +make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build +make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color= +[ 22%] Built target minccmp +make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 23%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c +[ 24%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l +Scanning dependencies of target mincconcat make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 25%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconcat/mincconcat.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 19%] Built target worldtovoxel -[ 19%] Built target mincexpand -Scanning dependencies of target mincgen -make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend +[ 25%] [BISON][ncgentab] Building parser with bison 3.7.5 +[ 26%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color= +/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: warning: 1 shift/reduce conflict [-Wconflicts-sr] +/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples +[ 26%] Built target mincblob +[ 26%] Built target mincconvert +[ 26%] Built target minccopy +make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 19%] Built target mincconvert -[ 19%] Built target minccopy -[ 19%] Built target xfmconcat -make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend -make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend +make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color= -[ 20%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color= +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/depend.internal". 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invert_raw_image -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c +Scanning dependencies of target worldtovoxel +Scanning dependencies of target mincaverage make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". -make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend -[ 21%] Linking C executable minc_modify_header -[ 22%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". -[ 23%] Linking C executable mincexample2 -[ 24%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c -[ 25%] Linking C executable mincinfo -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 -[ 25%] Linking C executable mincblob -[ 26%] Linking C executable minccmp -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 [ 27%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c -[ 28%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 28%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincaverage/mincaverage.c +[ 28%] Linking C executable minc_modify_header +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 +[ 29%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/worldtovoxel.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl 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"/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -lminc2 -lhdf5 -lpthread -lsz 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C executable rawtominc +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf +[ 30%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= +[ 31%] Linking C executable invert_raw_image +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +Scanning dependencies of target mincgen +[ 31%] Linking C executable worldtovoxel +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/worldtovoxel.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +[ 31%] Built target minc_modify_header +make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= +[ 32%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". +Scanning dependencies of target mincreshape make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build -make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 33%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 34%] Linking C executable mincdump +[ 34%] Built target rawtominc +make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color= +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". +Scanning dependencies of target mincmakevector +[ 34%] Built target invert_raw_image +make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 35%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 29%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c -[ 29%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c -[ 29%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c -[ 30%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o -[ 31%] Linking C executable mincextract +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= +make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 -[ 32%] Linking C executable mincaverage -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 36%] Linking C executable mincmorph +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". +[ 36%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +Scanning dependencies of target minclookup make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 32%] Built target minc_modify_header +[ 36%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c +[ 36%] Built target worldtovoxel make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal". Scanning dependencies of target xfminvert -[ 32%] Built target mincinfo -[ 32%] Built target mincexample2 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build -make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 37%] Linking C executable mincaverage make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 +[ 37%] Linking C executable mincconcat +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 +[ 38%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf +[ 38%] Built target mincdump +make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color= -[ 33%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -[ 34%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o +In file included from /usr/include/string.h:495, + from /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:10: +In function 'strncpy', + inlined from 'yyparse' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:345:13: +/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] + 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c: In function 'yyparse': +/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:342:20: note: length computed here + 342 | size_t len = strlen(termstring); + | ^~~~~~~~~~~~~~~~~~ +[ 39%] Linking C executable mincmakevector +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/depend.internal". -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Scanning dependencies of target mincmath make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 35%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c -[ 35%] Built target mincblob -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 39%] Built target mincmorph make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 35%] Built target minccmp +[ 40%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". Scanning dependencies of target mincmakescalar make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 35%] Built target mincaverage -make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend +[ 41%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakescalar/mincmakescalar.c +[ 42%] Linking C executable xfminvert +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 42%] Built target mincaverage +make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". Scanning dependencies of target mincresample make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build -[ 36%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakescalar/mincmakescalar.c +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 43%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 43%] Built target mincmakevector +[ 43%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgenyy.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 43%] Built target xfminvert +[ 43%] Built target mincconcat +make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= +[ 44%] Linking C executable minclookup +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 +[ 45%] Linking C executable mincmakescalar +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 +[ 46%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf +[ 47%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o Scanning dependencies of target minctoraw make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build +[ 48%] Linking C executable mincmath make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf +[ 49%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c +[ 50%] Linking C executable mincstats +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf +/build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function 'create_output_file.constprop': +/build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] + 1454 | (void) sprintf(string, "%s%d", dimname, idim); + | ^~ +/build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647] + 1454 | (void) sprintf(string, "%s%d", dimname, idim); + | ^~~~~~ +In file included from /usr/include/stdio.h:867, + from /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:207: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 266 bytes into a destination of size 256 + 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 37 | __bos (__s), __fmt, __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 51%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 51%] Built target mincmakescalar +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake --color= -[ 36%] Built target mincextract +[ 51%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 51%] Built target minclookup +[ 52%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend -[ 37%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -[ 38%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c -[ 39%] Linking C executable invert_raw_image -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/depend.internal". +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= Scanning dependencies of target mincwindow make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build -[ 39%] Linking C executable mincconcat -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 39%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c -[ 40%] Linking C executable mincmakevector -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 +[ 52%] Built target mincmath +make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake --color= Scanning dependencies of target mincsample -[ 41%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 53%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c +[ 52%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 42%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 43%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c -In file included from /usr/include/string.h:495, - from /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:10: -In function 'strncpy', - inlined from 'yyparse' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:345:13: -/usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] - 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c: In function 'yyparse': -/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:342:20: note: length computed here - 342 | size_t len = strlen(termstring); - | ^~~~~~~~~~~~~~~~~~ -[ 44%] Linking C executable xfminvert -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -[ 44%] Linking C executable rawtominc -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf -[ 44%] Built target invert_raw_image -make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake --color= -[ 44%] Built target mincconcat -make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= -[ 45%] Linking C executable mincwindow -[ 46%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". Scanning dependencies of target mincexample1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build +[ 53%] Built target mincstats +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend +[ 54%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 46%] Built target mincmakevector +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= +[ 54%] Linking C executable minctoraw +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 +[ 54%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample1.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf Scanning dependencies of target voxeltoworld -make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 46%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample1.c -[ 48%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -[ 48%] [BISON][gram] Building parser with bison 3.7.5 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 55%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c +[ 56%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c +[ 56%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c +[ 57%] Linking C executable mincwindow +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 57%] Built target minctoraw +make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend +[ 58%] Linking C executable voxeltoworld +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 59%] [BISON][gram] Building parser with bison 3.7.5 cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/gram.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples -[ 49%] Linking C executable minclookup -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 -[ 50%] Linking C executable mincmakescalar -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf -[ 50%] Linking C executable minctoraw -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 51%] Linking C executable mincdump -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 51%] Built target xfminvert +[ 60%] Linking C executable mincexample1 +[ 61%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend +[ 62%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c +/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': +/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:21: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] + 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); + | ^~~~~ +/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:20: note: assuming directive output of 22 bytes + 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); + | ^~~~~~~ +In file included from /usr/include/stdio.h:867, + from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: +/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 + 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 37 | __bos (__s), __fmt, __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". Scanning dependencies of target transformtags +[ 63%] Linking C executable mincreshape make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 52%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o -[ 53%] Linking C executable mincmath -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 -[ 53%] Built target rawtominc +[ 63%] Built target mincwindow make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color= -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 64%] [FLEX][lex] Building scanner with flex 2.6.4 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 65%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o +cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c +make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal". -Scanning dependencies of target acr_nema -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 54%] Linking C executable voxeltoworld -[ 54%] Built target mincwindow -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 -make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= -[ 54%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal". -Scanning dependencies of target ecattominc -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build -/build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function 'create_output_file.constprop': -/build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] - 1454 | (void) sprintf(string, "%s%d", dimname, idim); - | ^~ -/build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647] - 1454 | (void) sprintf(string, "%s%d", dimname, idim); - | ^~~~~~ -In file included from /usr/include/stdio.h:867, - from /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:207: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 266 bytes into a destination of size 256 - 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 37 | __bos (__s), __fmt, __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 55%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c -[ 55%] Built target minclookup +[ 65%] Linking C executable mincsample +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 +[ 65%] Built target voxeltoworld make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color= -[ 56%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -[ 56%] Built target mincmakescalar -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c +[ 65%] Built target mincexample1 make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color= +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +Scanning dependencies of target ecattominc +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +Scanning dependencies of target acr_nema +Scanning dependencies of target minctoecat Scanning dependencies of target nii2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". -Scanning dependencies of target minctoecat make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 56%] Built target minctoraw -make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend +[ 66%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c +make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color= -[ 57%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 67%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c -[ 57%] Built target mincdump -make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend -[ 58%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 68%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". +Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c +[ 68%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c +[ 68%] Built target mincreshape +make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color= +Scanning dependencies of target minccalc +[ 69%] Linking C executable transformtags +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal". +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf Scanning dependencies of target mnc2nii make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build -[ 59%] Linking C executable mincexample1 -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 -[ 59%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 70%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c +[ 71%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o +/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c +/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 72%] Linking C executable mincgen +[ 72%] Built target mincsample +make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 +make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/depend.internal". -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgenyy.c Scanning dependencies of target upet2mnc -[ 60%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c +/build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c: In function 'main': +/build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:736:31: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] + 736 | printf("# of voxels %ld\n", nii_ptr->nvox); + | ~~^ ~~~~~~~~~~~~~ + | | | + | long int size_t {aka unsigned int} + | %d +/build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:743:23: warning: passing argument 3 of 'restructure_array' from incompatible pointer type [-Wincompatible-pointer-types] + 743 | nii_lens, + | ^~~~~~~~ + | | + | long unsigned int * +In file included from /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:8: +/usr/include/restructure.h:13:37: note: expected 'const size_t *' {aka 'const unsigned int *'} but argument is of type 'long unsigned int *' + 13 | const size_t *lengths_perm, + | ~~~~~~~~~~~~~~^~~~~~~~~~~~ make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 61%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 62%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o +[ 73%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c -[ 62%] Built target mincmath -[ 63%] Linking C executable transformtags -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 -[ 64%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c -[ 64%] Linking C executable mincsample -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -[ 65%] [FLEX][lex] Building scanner with flex 2.6.4 -cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l -/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': -/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 73%] Built target transformtags +[ 74%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ @@ -1654,121 +1801,78 @@ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro 'VERSIONSTR' 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ -/build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c: In function 'main': -/build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:736:31: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] - 736 | printf("# of voxels %ld\n", nii_ptr->nvox); - | ~~^ ~~~~~~~~~~~~~ - | | | - | long int size_t {aka unsigned int} - | %d -/build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:743:23: warning: passing argument 3 of 'restructure_array' from incompatible pointer type [-Wincompatible-pointer-types] - 743 | nii_lens, - | ^~~~~~~~ - | | - | long unsigned int * -In file included from /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:8: -/usr/include/restructure.h:13:37: note: expected 'const size_t *' {aka 'const unsigned int *'} but argument is of type 'long unsigned int *' - 13 | const size_t *lengths_perm, - | ~~~~~~~~~~~~~~^~~~~~~~~~~~ -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". -Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". -[ 65%] Built target voxeltoworld -[ 66%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c -Scanning dependencies of target minccalc +[ 74%] Built target mincgen +[ 75%] Linking C executable nii2mnc +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 +[ 76%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio +[ 76%] Linking C executable mnc2nii +[ 77%] Linking C executable mincresample +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio +[ 77%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c +[ 78%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c +[ 79%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build -make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' +[ 80%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c +[ 80%] Built target nii2mnc +[ 80%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 66%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o +[ 80%] Linking C executable upet2mnc +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 +[ 80%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c -[ 67%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c -[ 67%] Built target mincexample1 -[ 67%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c -[ 68%] Linking C executable mincstats -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 70%] Linking C executable mincmorph -[ 70%] Linking C executable mincreshape -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 -[ 70%] Built target transformtags -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 71%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o +[ 80%] Built target mnc2nii +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl 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-fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c +[ 83%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c -[ 73%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o +[ 84%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/optim.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 73%] Built target mincstats -make[3]: Leaving directory 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CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 78%] Linking C executable nii2mnc -[ 78%] Built target mincmorph -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 -[ 79%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/element.c -[ 79%] Linking C executable mnc2nii -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 -[ 80%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf +[ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o 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CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c +[ 91%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf +[ 92%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/gram.c -[ 82%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c -[ 83%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c -[ 84%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c -[ 85%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c -[ 85%] Linking C executable upet2mnc -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 -[ 86%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c -[ 87%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o +[ 93%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/message.c -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 88%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 88%] Built target nii2mnc -[ 88%] Built target mnc2nii -[ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o +[ 93%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c -[ 88%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c -[ 88%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c -[ 89%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c +[ 93%] Built target ecattominc /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c: In function 'check_table_integrity': /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c:179:72: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] 179 | (void) fprintf(stderr, "Internal error: VR table size is wrong! %lu %lu %d\n", sizeof(VR_table), sizeof(VR_table[0]), ACR_VR_NUM_TYPES); @@ -1783,44 +1887,15 @@ | | | | long unsigned int unsigned int | %u -[ 90%] Linking C executable minctoecat -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 90%] Built target upet2mnc -/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': -/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:21: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] - 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); - | ^~~~~ -/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:20: note: assuming directive output of 22 bytes - 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); - | ^~~~~~~ -In file included from /usr/include/stdio.h:867, - from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: -/usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 - 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 37 | __bos (__s), __fmt, __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 90%] Built target minctoecat -[ 91%] Linking C executable ecattominc -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -[ 91%] Linking C executable minccalc -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 91%] Built target ecattominc -[ 92%] Linking C static library libacr_nema.a +[ 93%] Built target minctoecat +[ 94%] Linking C static library libacr_nema.a cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o /usr/bin/ranlib libacr_nema.a -[ 92%] Built target minccalc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 92%] Built target acr_nema +[ 94%] Built target acr_nema make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake --color= @@ -1830,20 +1905,23 @@ make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 93%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c [ 94%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -[ 94%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c -[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c -[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o +[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c +[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o +[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o +[ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o +[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o +[100%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c -[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c +[100%] Linking C executable minccalc +cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ @@ -1869,16 +1947,8 @@ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1084 | fread(data, 1, length, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 99%] Linking C executable mincgen -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf -make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[ 99%] Built target mincgen -[100%] Linking C executable mincresample -cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' -[100%] Built target mincresample +[100%] Built target minccalc [100%] Linking C executable dcm2mnc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf libacr_nema.a -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf @@ -1888,10 +1958,10 @@ /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' dh_auto_test - cd obj-i686-linux-gnu && make -j18 test ARGS\+=-j18 + cd obj-i686-linux-gnu && make -j10 test ARGS\+=-j10 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process -j18 +/usr/bin/ctest --force-new-ctest-process -j10 Test project /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu Start 1: mincinfo-test Start 2: mincstats-test @@ -1899,21 +1969,21 @@ Start 4: minccalc-test Start 5: mincresample-test Start 6: mincreshape-test -1/6 Test #5: mincresample-test ................ Passed 0.05 sec -2/6 Test #3: mincaverage-test ................. Passed 0.06 sec -3/6 Test #2: mincstats-test ................... Passed 0.09 sec -4/6 Test #1: mincinfo-test .................... Passed 0.12 sec -5/6 Test #6: mincreshape-test ................. Passed 0.17 sec -6/6 Test #4: minccalc-test .................... Passed 0.23 sec +1/6 Test #3: mincaverage-test ................. Passed 0.22 sec +2/6 Test #2: mincstats-test ................... Passed 0.24 sec +3/6 Test #5: mincresample-test ................ Passed 0.26 sec +4/6 Test #1: mincinfo-test .................... Passed 0.34 sec +5/6 Test #6: mincreshape-test ................. Passed 0.46 sec +6/6 Test #4: minccalc-test .................... Passed 0.64 sec 100% tests passed, 0 tests failed out of 6 -Total Test time (real) = 0.23 sec +Total Test time (real) = 0.68 sec make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2038,20 +2108,22 @@ dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-6_i386.deb'. dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-6_i386.deb'. +dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-6_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../minc-tools_2.3.00+dfsg-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/10294/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10294/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/52775 and its subdirectories -I: Current time: Tue Aug 16 05:10:32 -12 2022 -I: pbuilder-time-stamp: 1660669832 +I: removing directory /srv/workspace/pbuilder/10294 and its subdirectories +I: Current time: Thu Jul 15 00:54:33 +14 2021 +I: pbuilder-time-stamp: 1626260073