Diff of the two buildlogs: -- --- b1/build.log 2021-08-19 07:03:24.393840723 +0000 +++ b2/build.log 2021-08-19 07:25:45.611409260 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 21 01:25:19 -12 2022 -I: pbuilder-time-stamp: 1663766719 +I: Current time: Thu Aug 19 21:03:34 +14 2021 +I: pbuilder-time-stamp: 1629356614 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./python-deeptools_3.5.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.AtfCGht0/trustedkeys.kbx': General error -gpgv: Signature made Thu Sep 17 01:51:50 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.qS5DK3zn/trustedkeys.kbx': General error +gpgv: Signature made Fri Sep 18 03:51:50 2020 +14 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key @@ -31,137 +31,171 @@ dpkg-source: info: applying python2to3_for_executables.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/16118/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/26577/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/26577/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/26577/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=7' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='d5f8fc35368743ae99d94f5542e542ce' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='16118' - PS1='# ' - PS2='> ' + INVOCATION_ID=17dfbf4f1336423faab2054cb3c010ab + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=26577 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mfDYooteW8/pbuilderrc_lG3k --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mfDYooteW8/b1 --logfile b1/build.log python-deeptools_3.5.0-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mfDYooteW8/pbuilderrc_g621 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mfDYooteW8/b2 --logfile b2/build.log python-deeptools_3.5.0-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 5.10.0-8-amd64 #1 SMP Debian 5.10.46-4 (2021-08-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-686-pae #1 SMP Debian 5.10.46-4 (2021-08-03) i686 GNU/Linux I: ls -l /bin - total 5776 - -rwxr-xr-x 1 root root 1367848 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat - -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown - -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp - -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash - -rwxr-xr-x 1 root root 124904 Sep 22 2020 date - -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd - -rwxr-xr-x 1 root root 100752 Sep 22 2020 df - -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir - -rwxr-xr-x 1 root root 83644 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 34664 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 71928 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln - -rwxr-xr-x 1 root root 55572 Feb 7 2020 login - -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls - -rwxr-xr-x 1 root root 153124 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 58920 Jul 28 2021 more - -rwsr-xr-x 1 root root 50720 Jul 28 2021 mount - -rwxr-xr-x 1 root root 13856 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm - -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 17 03:48 sh -> dash - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty - -rwsr-xr-x 1 root root 79396 Jul 28 2021 su - -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch - -rwxr-xr-x 1 root root 34664 Sep 22 2020 true - -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Jul 28 2021 umount - -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 63024 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/16118/tmp/hooks/D02_print_environment finished + total 5812 + -rwxr-xr-x 1 root root 1367848 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat + -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown + -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp + -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash + -rwxr-xr-x 1 root root 124904 Sep 23 2020 date + -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd + -rwxr-xr-x 1 root root 100752 Sep 23 2020 df + -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir + -rwxr-xr-x 1 root root 83644 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 34664 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 71928 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln + -rwxr-xr-x 1 root root 55572 Feb 8 2020 login + -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls + -rwxr-xr-x 1 root root 153124 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 58920 Jul 29 09:09 more + -rwsr-xr-x 1 root root 50720 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 13856 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm + -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 19 21:14 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 16 23:27 sh.distrib -> dash + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty + -rwsr-xr-x 1 root root 79396 Jul 29 09:09 su + -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch + -rwxr-xr-x 1 root root 34664 Sep 23 2020 true + -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 63024 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/26577/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -365,7 +399,7 @@ Get: 140 http://deb.debian.org/debian bullseye/main i386 python3-pybigwig i386 0.3.17-1+b4 [38.2 kB] Get: 141 http://deb.debian.org/debian bullseye/main i386 python3-pysam i386 0.15.4+ds-3+b2 [1571 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 python3-scipy i386 1.6.0-2 [11.9 MB] -Fetched 73.3 MB in 3s (23.2 MB/s) +Fetched 73.3 MB in 1min 6s (1106 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) @@ -976,7 +1010,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/python-deeptools-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-deeptools_3.5.0-1_source.changes +hostname: Name or service not known +I: Running cd /build/python-deeptools-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-deeptools_3.5.0-1_source.changes dpkg-buildpackage: info: source package python-deeptools dpkg-buildpackage: info: source version 3.5.0-1 dpkg-buildpackage: info: source distribution unstable @@ -1030,60 +1065,60 @@ running build_py creating /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/heatmapper_utilities.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotEnrichment.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/heatmapper.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/multiBigwigSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/estimateReadFiltering.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/writeBedGraph.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/getRatio.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/writeBedGraph_bam_and_bw.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/SES_scaleFactor.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/deepBlue.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/bamPEFragmentSize.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/getScorePerBigWigBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/getFragmentAndReadSize.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotHeatmap.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotEnrichment.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/getScaleFactor.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/sumCoveragePerBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/cm.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/correlation.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/computeMatrix.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/estimateReadFiltering.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/multiBigwigSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/writeBedGraph.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/correctGCBias.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/heatmapper.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/correlation_heatmap.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/misc.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/bigwigCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/_version.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/computeMatrixOperations.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotPCA.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/bigwigCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotProfile.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/bamCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/mapReduce.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/multiBamSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/bamHandler.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/computeMatrix.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/computeMatrixOperations.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/getScorePerBigWigBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/alignmentSieve.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/countReadsPerBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/parserCommon.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/bamCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/computeGCBias.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/bamPEFragmentSize.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/__init__.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/SES_scaleFactor.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/countReadsPerBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/correctGCBias.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/correlation_heatmap.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/deepBlue.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/misc.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/utilities.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/getRatio.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/getFragmentAndReadSize.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotProfile.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/deeptools_list_tools.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/parserCommon.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/plotFingerprint.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/plotCorrelation.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/deeptools_list_tools.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/bamHandler.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/multiBamSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/sumCoveragePerBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/correlation.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/plotPCA.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools +copying deeptools/computeGCBias.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools copying deeptools/bamCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools -copying deeptools/plotHeatmap.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools creating /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/testskip_heatmapper_images.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_plotCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test copying deeptools/test/test_countReadsPerBin.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test copying deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_writeBedGraph.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_readFiltering.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_plotCoverage.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_computeMatrixOperations.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_tools.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/test_multiBamSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/testskip_heatmapper_images.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test -copying deeptools/test/__init__.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test copying deeptools/test/test_heatmapper.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test copying deeptools/test/test_bamCoverage_and_bamCompare.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_computeMatrixOperations.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/__init__.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_multiBamSummary.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_readFiltering.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_tools.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test +copying deeptools/test/test_writeBedGraph.py -> /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test running egg_info creating deepTools.egg-info writing deepTools.egg-info/PKG-INFO @@ -2264,132 +2299,132 @@ deeptools.test.test_plotCoverage.test_plotCoverage_default ... ok Minimal testing ... ok --minMappingQuality 10 --samFlagExclude 512 --ignoreDuplicates -bl ... ok -Test alignmentSieve with the --BED option ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_dwulud0r.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mjfezb5j.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_l6i8ns7a.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pa1a7kn5.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_sd4dpk2s.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_nexlkvq8.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ja6oy3qe.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_gbcwh5h6.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4d5ava5z.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1lm6ki05.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bo8lk7d7.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_htyrx6h8.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5eg7uwz5.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8gd_3d1u.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_x01a1y31.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ltv7al2r.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_tyx0im3f.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_j3un81w6.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_lgq76mos.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_48ptq24g.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xgz5o9ti.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_oim6apt_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vuq6uz2v.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_6xck2xo3.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_f_k7rd0j.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_upd2hj33.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qohn9fad.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_12jd0f7r.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hn8fs048.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_g6yulj2d.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_gfzsgs3_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_lhukrofg.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mf3_128i.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_l7bpe0jo.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ms7arq8n.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fd3us6it.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cu4_czs1.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_dorj576m.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_0y921inm.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qdufphkr.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_svw591p1.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rt0wq73s.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rxvrgvz8.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bbe0bzki.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pe71vyzm.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pgfq00oy.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mrp_0uqd.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_sqeczjry.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ks08xfe0.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_3br63g4i.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xvzc2rp3.bam' +Test alignmentSieve with the --BED option ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_v4q_40a7.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_taji5ytk.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ufhu0ak7.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_n5s67gp4.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_n7kd9sl2.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jlv8khgj.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_i5u9bv5z.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_gf8i_ng6.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__hg85eoa.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_s8ceumhr.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_n7j62irv.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_f6gr1za2.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hjvnnz8t.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_07cfe_2q.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9k6hhujw.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bnynbb30.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1iq2fgux.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_wcgttz6l.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7gnrcul3.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qyvtzmfg.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_v8vlggw0.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_gjao1nj0.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jc4kgzn_.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_30xv8_u5.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_6rcho81n.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_syte1v21.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4mm_ixwv.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1fa191tg.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_txljsqgr.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cf1o0u32.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ssaeqtq8.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_0g8belel.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cyo9taiw.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_aqutu7n1.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_anfdtzux.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_sii4zwvm.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cuz7d3e4.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__kcwsjjc.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9bq3e086.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5n7w491_.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hmyb0q49.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_k1yv66id.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hhm7k2jy.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mza403kh.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_dui2cy99.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_a2gasoi9.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_r6c7txe7.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4fqw_m33.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7gup_fln.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_p6rnszwp.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ms80ipj0.bam' ok Test filtering a BAM file by MAPQ, flag, and blacklist ... SKIP: Skip this test (see )https://github.com/deeptools/deepTools/issues/903 -Test alignmentSieve --BED --shift ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mkbdt0ya.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_o0wxytth.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_eegp9rxy.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mmqr63_d.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_25wejqkj.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fhbkmlze.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_121i6__h.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_3dttl0ar.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_k_440ygq.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_m35lqam8.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_asuy_qlv.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_y26xbwml.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ner0xrz_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4ef3f6p4.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_3yyki08v.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_6kngyo__.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2jftdo5x.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_tu62ojqt.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_x8mavgts.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_tf8ssqfh.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_y8facpyv.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_wab914l_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__z4kzbdo.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_p5ms7f9w.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8hedejx7.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7p8p6z97.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7twf2q33.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_i75mzsj0.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_76m5t3bz.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_zgqq2vjc.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_r5qn2khz.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bhu2bt9v.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qnfi72qo.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7712gyqk.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rutr_g9n.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_v1jc3_vx.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ywq2jw1s.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_y6zk3epc.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pmxljg6i.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7n53xda0.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_azuvr7d5.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_0l13vybq.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__bsf6qr_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vz2d9q3a.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1tweyupd.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bion4yii.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__6jee7r1.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_arx0gzou.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1j_8j14b.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_k5olluso.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7mqlnj5v.bam' +Test alignmentSieve --BED --shift ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4beg0raf.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_18gi_mrf.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__2snva5q.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_v1whjlyh.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_m_woo32h.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_3xli5gmu.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_j4m2q0y9.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jcfpjvsx.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qp5jequx.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ed3jkm00.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_tnn1vvmr.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_z2j90gj5.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_nag8i959.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ykqspehu.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_05ho5f3s.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_yp_mnnmr.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ygse387z.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_m_xwj3pw.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_oqbjp6ho.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rq8kc90u.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_j8l6djg2.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rkqndzkz.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_b0vhaggc.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xaayjr3h.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5rkz7dfh.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_osv6cr9f.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_th3cbs0x.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_nk0305zf.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_w270zir3.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_d2einmlw.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cxm7uhr8.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_i8dimmj8.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_56fn1gov.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_uuc89tc9.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1vcowaso.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fpc81y6c.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_j00bkbf0.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_w8_ueusq.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_p3gp69ax.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rjx_civ_.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_a63xs4t6.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_irf7sl8v.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__3m_5zkd.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vdcqn2ls.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_igxzp2fz.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qwz9dlwc.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_c_840_jg.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ry0_6s0l.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_q8lyt3h7.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_nyr15484.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ib0ieqn5.bam' ok -Checks everything that is in /bin/ ... plotEnrichment 3.5.0 -deeptools 3.5.0 -plotPCA 3.5.0 +Checks everything that is in /bin/ ... estimateScaleFactor 3.5.0 +bamCompare 3.5.0 alignmentSieve 3.5.0 -plotCoverage 3.5.0 bigwigCompare 3.5.0 -estimateScaleFactor 3.5.0 -plotHeatmap 3.5.0 -plotFingerprint 3.5.0 computeMatrixOperations 3.5.0 -computeGCBias 3.5.0 -plotCorrelation 3.5.0 -bamCompare 3.5.0 -computeMatrix 3.5.0 -estimateReadFiltering 3.5.0 +plotEnrichment 3.5.0 multiBamSummary 3.5.0 -plotProfile 3.5.0 -correctGCBias 3.5.0 +plotCoverage 3.5.0 +computeMatrix 3.5.0 bamCoverage 3.5.0 +deeptools 3.5.0 bamPEFragmentSize 3.5.0 +plotPCA 3.5.0 multiBigwigSummary 3.5.0 +plotProfile 3.5.0 +correctGCBias 3.5.0 +plotFingerprint 3.5.0 +plotHeatmap 3.5.0 +estimateReadFiltering 3.5.0 +plotCorrelation 3.5.0 +computeGCBias 3.5.0 ok The bamFile1 contains a read at position 10 ... ok test_writeBedGraph_worker (deeptools.test.test_writeBedGraph.TestWriteBedGraph) ... ok @@ -2417,13 +2452,13 @@ deeptools.test.testskip_heatmapper_images.test_plotProfiler_multibigwig_pergroup ... ok ---------------------------------------------------------------------- -Ran 108 tests in 10.663s +Ran 108 tests in 23.596s OK (SKIP=1) -MainProcess, processing 3 (22919.7 per sec) reads @ 3R:0-200 -MainProcess countReadsInRegions_worker: processing 4 (13486.5 per sec) @ 3R:0-200 -MainProcess, processing 3 (18342.4 per sec) reads @ 3R:0-200 -MainProcess countReadsInRegions_worker: processing 4 (11924.1 per sec) @ 3R:0-200 +MainProcess, processing 3 (12570.3 per sec) reads @ 3R:0-200 +MainProcess countReadsInRegions_worker: processing 4 (9325.9 per sec) @ 3R:0-200 +MainProcess, processing 3 (9568.8 per sec) reads @ 3R:0-200 +MainProcess countReadsInRegions_worker: processing 4 (7345.5 per sec) @ 3R:0-200 Due to filtering, 50.0% of the aforementioned alignments will be used 1.0 Due to filtering, 50.0% of the aforementioned alignments will be used 1.0 There are 193 alignments, of which 7 are completely within a blacklist region. @@ -2444,27 +2479,27 @@ sample mean std min 25% 50% 75% max test1.cram 4.90 5.63 0 0.0 3.0 8.0 25 test2.cram 6.56 6.63 0 0.0 5.0 11.0 25 -plotEnrichment -deeptools -plotPCA +estimateScaleFactor +bamCompare alignmentSieve -plotCoverage bigwigCompare -estimateScaleFactor -plotHeatmap -plotFingerprint computeMatrixOperations -computeGCBias -plotCorrelation -bamCompare -computeMatrix -estimateReadFiltering +plotEnrichment multiBamSummary -plotProfile -correctGCBias +plotCoverage +computeMatrix bamCoverage +deeptools bamPEFragmentSize +plotPCA multiBigwigSummary +plotProfile +correctGCBias +plotFingerprint +plotHeatmap +estimateReadFiltering +plotCorrelation +computeGCBias make[1]: Leaving directory '/build/python-deeptools-3.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -2497,161 +2532,161 @@ creating /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages creating /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/heatmapper_utilities.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotEnrichment.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/writeBedGraph_bam_and_bw.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/SES_scaleFactor.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotCoverage.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/deepBlue.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamPEFragmentSize.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getScorePerBigWigBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getScaleFactor.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/sumCoveragePerBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/cm.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correlation.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeMatrix.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/estimateReadFiltering.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/heatmapper.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/multiBigwigSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/estimateReadFiltering.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/writeBedGraph.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correctGCBias.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/heatmapper.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correlation_heatmap.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/misc.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bigwigCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/_version.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeMatrixOperations.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotPCA.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/mapReduce.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/multiBamSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getRatio.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/writeBedGraph_bam_and_bw.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getFragmentAndReadSize.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotHeatmap.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotEnrichment.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools creating /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/testskip_heatmapper_images.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_plotCoverage.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_countReadsPerBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_writeBedGraph.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_readFiltering.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_plotCoverage.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_computeMatrixOperations.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_tools.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_multiBamSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/testskip_heatmapper_images.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/__init__.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_heatmapper.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_bamCoverage_and_bamCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamHandler.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/alignmentSieve.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/countReadsPerBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/parserCommon.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_computeMatrixOperations.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/__init__.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_multiBamSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_readFiltering.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_tools.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/test/test_writeBedGraph.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getScaleFactor.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/cm.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/_version.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bigwigCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotProfile.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamCoverage.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeGCBias.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/mapReduce.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotCoverage.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeMatrix.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeMatrixOperations.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getScorePerBigWigBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/alignmentSieve.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamPEFragmentSize.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/__init__.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/SES_scaleFactor.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/countReadsPerBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correctGCBias.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correlation_heatmap.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/deepBlue.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/misc.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/utilities.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getRatio.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/getFragmentAndReadSize.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotProfile.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/deeptools_list_tools.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/parserCommon.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotFingerprint.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotCorrelation.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/deeptools_list_tools.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamHandler.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/multiBamSummary.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/sumCoveragePerBin.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/correlation.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotPCA.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools +copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/computeGCBias.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/bamCompare.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools -copying /build/python-deeptools-3.5.0/.pybuild/cpython3_3.9_deeptools/build/deeptools/plotHeatmap.py -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/heatmapper_utilities.py to heatmapper_utilities.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotEnrichment.py to plotEnrichment.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/writeBedGraph_bam_and_bw.py to writeBedGraph_bam_and_bw.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/SES_scaleFactor.py to SES_scaleFactor.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotCoverage.py to plotCoverage.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/deepBlue.py to deepBlue.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamPEFragmentSize.py to bamPEFragmentSize.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getScorePerBigWigBin.py to getScorePerBigWigBin.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getScaleFactor.py to getScaleFactor.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/sumCoveragePerBin.py to sumCoveragePerBin.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/cm.py to cm.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correlation.py to correlation.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeMatrix.py to computeMatrix.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/estimateReadFiltering.py to estimateReadFiltering.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/heatmapper.py to heatmapper.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/multiBigwigSummary.py to multiBigwigSummary.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/estimateReadFiltering.py to estimateReadFiltering.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/writeBedGraph.py to writeBedGraph.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correctGCBias.py to correctGCBias.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/heatmapper.py to heatmapper.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correlation_heatmap.py to correlation_heatmap.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/misc.py to misc.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bigwigCompare.py to bigwigCompare.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/_version.py to _version.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeMatrixOperations.py to computeMatrixOperations.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotPCA.py to plotPCA.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/mapReduce.py to mapReduce.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/multiBamSummary.py to multiBamSummary.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getRatio.py to getRatio.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/writeBedGraph_bam_and_bw.py to writeBedGraph_bam_and_bw.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getFragmentAndReadSize.py to getFragmentAndReadSize.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotHeatmap.py to plotHeatmap.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotEnrichment.py to plotEnrichment.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/testskip_heatmapper_images.py to testskip_heatmapper_images.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_plotCoverage.py to test_plotCoverage.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_countReadsPerBin.py to test_countReadsPerBin.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py to test_bigwigCompare_and_multiBigwigSummary.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_writeBedGraph.py to test_writeBedGraph.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_readFiltering.py to test_readFiltering.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_plotCoverage.py to test_plotCoverage.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_computeMatrixOperations.py to test_computeMatrixOperations.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_tools.py to test_tools.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_multiBamSummary.py to test_multiBamSummary.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/testskip_heatmapper_images.py to testskip_heatmapper_images.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_heatmapper.py to test_heatmapper.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_bamCoverage_and_bamCompare.py to test_bamCoverage_and_bamCompare.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamHandler.py to bamHandler.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/alignmentSieve.py to alignmentSieve.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/countReadsPerBin.py to countReadsPerBin.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/parserCommon.py to parserCommon.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_computeMatrixOperations.py to test_computeMatrixOperations.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_multiBamSummary.py to test_multiBamSummary.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_readFiltering.py to test_readFiltering.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_tools.py to test_tools.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/test/test_writeBedGraph.py to test_writeBedGraph.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getScaleFactor.py to getScaleFactor.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/cm.py to cm.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/_version.py to _version.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bigwigCompare.py to bigwigCompare.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotProfile.py to plotProfile.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamCoverage.py to bamCoverage.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeGCBias.py to computeGCBias.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/mapReduce.py to mapReduce.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotCoverage.py to plotCoverage.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeMatrix.py to computeMatrix.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeMatrixOperations.py to computeMatrixOperations.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getScorePerBigWigBin.py to getScorePerBigWigBin.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/alignmentSieve.py to alignmentSieve.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamPEFragmentSize.py to bamPEFragmentSize.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/SES_scaleFactor.py to SES_scaleFactor.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/countReadsPerBin.py to countReadsPerBin.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correctGCBias.py to correctGCBias.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correlation_heatmap.py to correlation_heatmap.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/deepBlue.py to deepBlue.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/misc.py to misc.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/utilities.py to utilities.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getRatio.py to getRatio.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/getFragmentAndReadSize.py to getFragmentAndReadSize.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotProfile.py to plotProfile.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/deeptools_list_tools.py to deeptools_list_tools.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/parserCommon.py to parserCommon.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotFingerprint.py to plotFingerprint.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotCorrelation.py to plotCorrelation.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/deeptools_list_tools.py to deeptools_list_tools.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamHandler.py to bamHandler.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/multiBamSummary.py to multiBamSummary.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/sumCoveragePerBin.py to sumCoveragePerBin.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/correlation.py to correlation.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotPCA.py to plotPCA.cpython-39.pyc +byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/computeGCBias.py to computeGCBias.cpython-39.pyc byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/bamCompare.py to bamCompare.cpython-39.pyc -byte-compiling /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deeptools/plotHeatmap.py to plotHeatmap.cpython-39.pyc running install_egg_info Copying deepTools.egg-info to /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/lib/python3.9/dist-packages/deepTools-3.5.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotEnrichment -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/deeptools -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotPCA -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/estimateScaleFactor -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/bamCompare -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/alignmentSieve -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotCoverage -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/bigwigCompare -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/estimateScaleFactor -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotHeatmap -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotFingerprint -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/computeMatrixOperations -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/computeGCBias -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotCorrelation -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/bamCompare -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/computeMatrix -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/estimateReadFiltering -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/plotEnrichment -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/multiBamSummary -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/plotProfile -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -copying build/scripts-3.9/correctGCBias -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/plotCoverage -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/computeMatrix -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/bamCoverage -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/deeptools -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/bamPEFragmentSize -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/plotPCA -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin copying build/scripts-3.9/multiBigwigSummary -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotEnrichment to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/deeptools to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotPCA to 755 +copying build/scripts-3.9/plotProfile -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/correctGCBias -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/plotFingerprint -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/plotHeatmap -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/estimateReadFiltering -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/plotCorrelation -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +copying build/scripts-3.9/computeGCBias -> /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/estimateScaleFactor to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bamCompare to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/alignmentSieve to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotCoverage to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bigwigCompare to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/estimateScaleFactor to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotHeatmap to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotFingerprint to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeMatrixOperations to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeGCBias to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotCorrelation to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bamCompare to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeMatrix to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/estimateReadFiltering to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotEnrichment to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/multiBamSummary to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotProfile to 755 -changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/correctGCBias to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotCoverage to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeMatrix to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bamCoverage to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/deeptools to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/bamPEFragmentSize to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotPCA to 755 changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/multiBigwigSummary to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotProfile to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/correctGCBias to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotFingerprint to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotHeatmap to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/estimateReadFiltering to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/plotCorrelation to 755 +changing mode of /build/python-deeptools-3.5.0/debian/python3-deeptools/usr/bin/computeGCBias to 755 dh_installdocs -O--buildsystem=pybuild install -d debian/python3-deeptools/usr/share/doc/python3-deeptools install -d debian/.debhelper/generated/python3-deeptools @@ -2680,7 +2715,7 @@ D: dh_python3 pydist:142: trying to find dependency for pyBigWig>=0.2.1 (python=None) D: dh_python3 pydist:142: trying to find dependency for pysam>=0.14.0 (python=None) D: dh_python3 pydist:142: trying to find dependency for scipy>=0.17.0 (python=None) -D: dh_python3 depends:275: D={'python3-pybigwig', 'python3:any', 'python3-numpy', 'python3-py2bit', 'python3-matplotlib (>=2.1.2)', 'python3-numpydoc', 'python3-scipy (>=0.17.0)', 'python3-deeptoolsintervals', 'python3-plotly (>=2.0.0)', 'python3-pysam (>=0.14.0)'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:275: D={'python3-pysam (>=0.14.0)', 'python3-numpy', 'python3-numpydoc', 'python3-py2bit', 'python3-scipy (>=0.17.0)', 'python3-plotly (>=2.0.0)', 'python3-matplotlib (>=2.1.2)', 'python3:any', 'python3-pybigwig', 'python3-deeptoolsintervals'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -2725,12 +2760,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/26577/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/26577/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/16118 and its subdirectories -I: Current time: Wed Sep 21 01:26:23 -12 2022 -I: pbuilder-time-stamp: 1663766783 +I: removing directory /srv/workspace/pbuilder/26577 and its subdirectories +I: Current time: Thu Aug 19 21:25:45 +14 2021 +I: pbuilder-time-stamp: 1629357945