I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 28 12:10:59 +14 2023 I: pbuilder-time-stamp: 1682633459 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libpwizlite_3.0.4-1.dsc] I: copying [./libpwizlite_3.0.4.orig.tar.gz] I: copying [./libpwizlite_3.0.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Mar 16 04:18:45 2022 +14 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libpwizlite_3.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting libpwizlite in libpwizlite-3.0.4 dpkg-source: info: unpacking libpwizlite_3.0.4.orig.tar.gz dpkg-source: info: unpacking libpwizlite_3.0.4-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28603/tmp/hooks/D01_modify_environment starting debug: Running on ionos12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 28 12:11 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/28603/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/28603/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=8a4d3485e9a24f39af9ac7802875cf0a LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=28603 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Xs2FcEjv/pbuilderrc_ICAf --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Xs2FcEjv/b2 --logfile b2/build.log --extrapackages usrmerge libpwizlite_3.0.4-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 24 11:24 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp -rwxr-xr-x 1 root root 136916 Jan 6 03:20 dash -rwxr-xr-x 1 root root 137160 Sep 21 2022 date -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd -rwxr-xr-x 1 root root 108940 Sep 21 2022 df -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir -rwxr-xr-x 1 root root 87760 Mar 24 00:20 dmesg lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep -rwxr-xr-x 1 root root 34664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 24 00:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 22:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 25 04:43 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 20 03:33 hostname -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln -rwxr-xr-x 1 root root 55600 Mar 24 01:43 login -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls -rwxr-xr-x 1 root root 214568 Mar 24 00:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 24 00:20 more -rwsr-xr-x 1 root root 58912 Mar 24 00:20 mount -rwxr-xr-x 1 root root 13856 Mar 24 00:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 3 06:31 run-parts -rwxr-xr-x 1 root root 133224 Jan 6 09:55 sed lrwxrwxrwx 1 root root 9 Apr 28 12:11 sh -> /bin/bash -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty -rwsr-xr-x 1 root root 83492 Mar 24 00:20 su -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync -rwxr-xr-x 1 root root 598456 Apr 7 04:25 tar -rwxr-xr-x 1 root root 13860 Nov 3 06:31 tempfile -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch -rwxr-xr-x 1 root root 34664 Sep 21 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 22:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 24 00:20 umount -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 24 00:20 wdctl lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/28603/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.12), dh-exec (>= 0.3), dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.12); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on dh-exec (>= 0.3); however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python3{a} python3-docutils{a} python3-minimal{a} python3-roman{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx psmisc publicsuffix python3-pil python3-pygments wget 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 66.2 MB of archives. After unpacking 382 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 sgml-base all 1.31 [15.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libarchive13 i386 3.6.2-1 [385 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-9 [420 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 librhash0 i386 1.4.3-3 [149 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 cmake-data all 3.25.1-1 [2026 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 cmake i386 3.25.1-1 [9767 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 52 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 54 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 dh-exec i386 0.27 [28.2 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 xml-core all 0.18+nmu1 [23.8 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 docutils-common all 0.19+dfsg-6 [127 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libboost-atomic1.74.0 i386 1.74.0+ds1-20 [220 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libboost-atomic1.74-dev i386 1.74.0+ds1-20 [221 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libboost-chrono1.74.0 i386 1.74.0+ds1-20 [229 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libboost-chrono1.74-dev i386 1.74.0+ds1-20 [237 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libboost-chrono-dev i386 1.74.0.3 [4956 B] Get: 70 http://deb.debian.org/debian bookworm/main i386 libboost-date-time1.74.0 i386 1.74.0+ds1-20 [217 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libboost-serialization1.74.0 i386 1.74.0+ds1-20 [325 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libboost-serialization1.74-dev i386 1.74.0+ds1-20 [368 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libboost-date-time1.74-dev i386 1.74.0+ds1-20 [226 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 75 http://deb.debian.org/debian bookworm/main i386 libboost-filesystem1.74.0 i386 1.74.0+ds1-20 [264 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libboost-system1.74.0 i386 1.74.0+ds1-20 [218 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libboost-system1.74-dev i386 1.74.0+ds1-20 [219 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libboost-filesystem1.74-dev i386 1.74.0+ds1-20 [286 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libboost-filesystem-dev i386 1.74.0.3 [4368 B] Get: 80 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74.0 i386 1.74.0+ds1-20 [509 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libboost-regex1.74-dev i386 1.74.0+ds1-20 [585 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libboost-iostreams1.74-dev i386 1.74.0+ds1-20 [250 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B] Get: 85 http://deb.debian.org/debian bookworm/main i386 libboost-thread1.74.0 i386 1.74.0+ds1-20 [259 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libboost-thread1.74-dev i386 1.74.0+ds1-20 [270 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 libboost-thread-dev i386 1.74.0.3 [4356 B] Get: 88 http://deb.debian.org/debian bookworm/main i386 python3-roman all 3.3-3 [9880 B] Get: 89 http://deb.debian.org/debian bookworm/main i386 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Fetched 66.2 MB in 1s (50.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20354 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... 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Preparing to unpack .../71-libboost-regex1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-regex1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-iostreams1.74-dev:i386. Preparing to unpack .../72-libboost-iostreams1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-iostreams1.74-dev:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-iostreams-dev:i386. Preparing to unpack .../73-libboost-iostreams-dev_1.74.0.3_i386.deb ... Unpacking libboost-iostreams-dev:i386 (1.74.0.3) ... Selecting previously unselected package libboost-thread1.74.0:i386. Preparing to unpack .../74-libboost-thread1.74.0_1.74.0+ds1-20_i386.deb ... Unpacking libboost-thread1.74.0:i386 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-thread1.74-dev:i386. Preparing to unpack .../75-libboost-thread1.74-dev_1.74.0+ds1-20_i386.deb ... Unpacking libboost-thread1.74-dev:i386 (1.74.0+ds1-20) ... 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Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/28603/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/28603/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/libpwizlite-3.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpwizlite_3.0.4-1_source.changes dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --build-system=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libpwizlite-3.0.4' rm -f debian/libpwizlite.3 rm -rf debian/includes dh_clean make[1]: Leaving directory '/build/libpwizlite-3.0.4' dh_autoreconf_clean -O--build-system=cmake dh_clean -O--build-system=cmake debian/rules build dh build --build-system=cmake dh_update_autotools_config -O--build-system=cmake dh_autoreconf -O--build-system=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libpwizlite-3.0.4' dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/usr" \ -DCMAKE_BUILD_TYPE=release cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release .. -- The CXX compiler identification is GNU 12.2.0 -- The C compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- CMAKE_LIBRARY_ARCHITECTURE: i386-linux-gnu -- Set CMAKE_INSTALL_PREFIX to /usr -- Install directory prefix: /usr -- CMAKE_INSTALL_FULL_LIBDIR: /usr/lib/i386-linux-gnu -- CMAKE_INSTALL_FULL_INCLUDEDIR: /usr/include Configuring build for project pwizlite -- Set CMAKE_CXX_STANDARD to 17 (required) -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- CMAKE_SOURCE_DIR: /build/libpwizlite-3.0.4 UNIX non APPLE environment Please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug ../development -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.13") -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: iostreams thread filesystem chrono -- Starting configuration of pwizlite -- The build toolchain is: Linux  -- CMAKE_CURRENT_BINARY_DIR: /build/libpwizlite-3.0.4/obj-i686-linux-gnu -- CMAKE_BUILD_TYPE: release. -- Adding subdirectory src for PROJECT: pwizlite -- Setting -Wall. -- Boost_LIBRARIES found 1_74 -- Boost_INCLUDES: /usr/include -- Boost_LIB_DIRS: /usr/lib/i386-linux-gnu -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/libpwizlite-3.0.4/obj-i686-linux-gnu rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 sh debian/make-included-headers-hierarchy.sh baseName: enum.hpp dirName: boost 'boost/enum.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum.hpp' baseName: windows.hpp dirName: boost/nowide 'boost/nowide/windows.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/windows.hpp' baseName: fstream.hpp dirName: boost/nowide 'boost/nowide/fstream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/fstream.hpp' baseName: iostream.hpp dirName: boost/nowide 'boost/nowide/iostream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/iostream.hpp' baseName: args.hpp dirName: boost/nowide 'boost/nowide/args.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: cstdio.hpp dirName: boost/nowide 'boost/nowide/cstdio.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/cstdio.hpp' baseName: stackstring.hpp dirName: boost/nowide 'boost/nowide/stackstring.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/stackstring.hpp' baseName: convert.hpp dirName: boost/nowide 'boost/nowide/convert.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/convert.hpp' baseName: cenv.hpp dirName: boost/nowide 'boost/nowide/cenv.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/cenv.hpp' baseName: filebuf.hpp dirName: boost/nowide 'boost/nowide/filebuf.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/filebuf.hpp' baseName: config.hpp dirName: boost/nowide 'boost/nowide/config.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/config.hpp' baseName: system.hpp dirName: boost/nowide 'boost/nowide/system.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/system.hpp' baseName: cstdlib.hpp dirName: boost/nowide 'boost/nowide/cstdlib.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' baseName: base.hpp dirName: boost/enum 'boost/enum/base.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum/base.hpp' baseName: bitfield.hpp dirName: boost/enum 'boost/enum/bitfield.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum/bitfield.hpp' baseName: macros.hpp dirName: boost/enum 'boost/enum/macros.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum/macros.hpp' baseName: iterator.hpp dirName: boost/enum 'boost/enum/iterator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/enum/iterator.hpp' baseName: foreach_field.hpp dirName: boost 'boost/foreach_field.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/foreach_field.hpp' baseName: arbitrary_positional_facade.hpp dirName: boost/iostreams 'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' baseName: base64.hpp dirName: boost/iostreams/filter 'boost/iostreams/filter/base64.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' baseName: singleton.hpp dirName: boost/utility 'boost/utility/singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/singleton.hpp' baseName: mutexed_singleton.hpp dirName: boost/utility 'boost/utility/mutexed_singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' baseName: restricted.hpp dirName: boost/utility/detail 'boost/utility/detail/restricted.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: member_dereference.hpp dirName: boost/utility/detail 'boost/utility/detail/member_dereference.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' baseName: thread_specific_singleton.hpp dirName: boost/utility 'boost/utility/thread_specific_singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' baseName: SpectrumList_Demux.hpp dirName: pwiz/analysis/spectrum_processing 'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' baseName: DemuxDataProcessingStrings.hpp dirName: pwiz/analysis/demux 'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' baseName: MinimumPepXML.hpp dirName: pwiz/data/misc 'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' baseName: PeakData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/PeakData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' baseName: FrequencyDataTestData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' baseName: CalibrationParameters.hpp dirName: pwiz/data/misc 'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' baseName: SampleDatum.hpp dirName: pwiz/data/misc 'pwiz/data/misc/SampleDatum.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' baseName: FrequencyData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' baseName: Index.hpp dirName: pwiz/data/common 'pwiz/data/common/Index.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/Index.hpp' baseName: MemoryIndex.hpp dirName: pwiz/data/common 'pwiz/data/common/MemoryIndex.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' baseName: diff_std.hpp dirName: pwiz/data/common 'pwiz/data/common/diff_std.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' baseName: CVTranslator.hpp dirName: pwiz/data/common 'pwiz/data/common/CVTranslator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' baseName: cv.hpp dirName: pwiz/data/common 'pwiz/data/common/cv.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/cv.hpp' baseName: obo.hpp dirName: pwiz/data/common 'pwiz/data/common/obo.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/obo.hpp' baseName: BinaryIndexStream.hpp dirName: pwiz/data/common 'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' baseName: ParamTypes.hpp dirName: pwiz/data/common 'pwiz/data/common/ParamTypes.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' baseName: Unimod.hpp dirName: pwiz/data/common 'pwiz/data/common/Unimod.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' baseName: SpectrumList_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' baseName: MemoryMRUCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' baseName: RAMPAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' baseName: SpectrumList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' baseName: Serializer_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' baseName: TextWriter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/TextWriter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' baseName: examples.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/examples.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' baseName: MSDataMerger.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' baseName: References.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/References.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' baseName: Index_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Index_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' baseName: DefaultReaderList.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' baseName: Serializer_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' baseName: SpectrumList_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' baseName: Version.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Version.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' baseName: MSData.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' baseName: IO.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/IO.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' baseName: ChromatogramList_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' baseName: Reader.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Reader.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' baseName: SpectrumIterator.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' baseName: LegacyAdapter.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' baseName: SpectrumListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' baseName: MSNumpress.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSNumpress.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' baseName: ChromatogramList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' baseName: Diff.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Diff.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' baseName: MSDataFile.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataFile.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' baseName: SpectrumListCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' baseName: Version.hpp dirName: pwiz 'pwiz/Version.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/Version.hpp' baseName: Std.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Std.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: Exception.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Exception.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' baseName: unit.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/unit.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' baseName: IntegerSet.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IntegerSet.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' baseName: shared_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/shared_map.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' baseName: BinaryData.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/BinaryData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' baseName: Once.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Once.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' baseName: Base64.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Base64.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' baseName: COMInitializer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/COMInitializer.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' baseName: almost_equal.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/almost_equal.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' baseName: DateTime.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/DateTime.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' baseName: optimized_lexical_cast.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' baseName: Stream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Stream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' baseName: mru_list.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/mru_list.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' baseName: MSIHandler.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/MSIHandler.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' baseName: IterationListener.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/IterationListener.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' baseName: Environment.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Environment.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' baseName: Export.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Export.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' baseName: VendorReaderTestHarness.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' baseName: endian.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/endian.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: String.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/String.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' baseName: virtual_map.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/virtual_map.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' baseName: TabReader.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/TabReader.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' baseName: Container.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Container.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' baseName: automation_vector.h dirName: pwiz/utility/misc 'pwiz/utility/misc/automation_vector.h' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' baseName: Singleton.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Singleton.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' baseName: Timer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Timer.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' baseName: Image.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Image.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' baseName: SHA1.h dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1.h' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' baseName: Filesystem.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Filesystem.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' baseName: random_access_compressed_ifstream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' baseName: Parabola.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Parabola.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' baseName: Types.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Types.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: Stats.hpp dirName: pwiz/utility/math 'pwiz/utility/math/Stats.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' baseName: round.hpp dirName: pwiz/utility/math 'pwiz/utility/math/round.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/round.hpp' baseName: MatrixInverse.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatrixInverse.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' baseName: qr.hpp dirName: pwiz/utility/math 'pwiz/utility/math/qr.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' baseName: HouseholderQR.hpp dirName: pwiz/utility/math 'pwiz/utility/math/HouseholderQR.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' baseName: LinearLeastSquares.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' baseName: LinearSolver.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearSolver.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' baseName: OrderedPair.hpp dirName: pwiz/utility/math 'pwiz/utility/math/OrderedPair.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' baseName: MatchedFilter.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatchedFilter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' baseName: erf.hpp dirName: pwiz/utility/math 'pwiz/utility/math/erf.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' baseName: XMLWriter.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' baseName: SAXParser.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' baseName: MZTolerance.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' baseName: IsotopeTable.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' baseName: Chemistry.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' baseName: IsotopeEnvelopeEstimator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' baseName: IsotopeCalculator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' baseName: ChemistryData.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' baseName: MzMobilityWindow.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' baseName: Ion.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Ion.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' baseName: copyif.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/base.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' baseName: constants.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' baseName: scale.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' baseName: interpolation.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' baseName: diff.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' baseName: interpolate.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' baseName: breakspec.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' baseName: bin1d.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' baseName: determinebinwidth.hpp dirName: pwiz/utility/findmf/base/resample/utilities 'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' baseName: masscomparefunctors.hpp dirName: pwiz/utility/findmf/base/resample 'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' baseName: filter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' baseName: preparedata.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' baseName: gauss.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' baseName: gaussfilter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/libpwizlite-3.0.4/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' make[1]: Leaving directory '/build/libpwizlite-3.0.4' dh_auto_build -O--build-system=cmake cd obj-i686-linux-gnu && make -j7 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/libpwizlite-3.0.4/obj-i686-linux-gnu' /usr/bin/cmake -S/build/libpwizlite-3.0.4 -B/build/libpwizlite-3.0.4/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libpwizlite-3.0.4/obj-i686-linux-gnu/CMakeFiles /build/libpwizlite-3.0.4/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/libpwizlite-3.0.4/obj-i686-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/depend make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/depend make[3]: Entering directory '/build/libpwizlite-3.0.4/obj-i686-linux-gnu' cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.4 /build/libpwizlite-3.0.4/src /build/libpwizlite-3.0.4/obj-i686-linux-gnu /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/libpwizlite-3.0.4/obj-i686-linux-gnu' cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.4 /build/libpwizlite-3.0.4/src /build/libpwizlite-3.0.4/obj-i686-linux-gnu /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/libpwizlite-3.0.4/obj-i686-linux-gnu' make[3]: Leaving directory '/build/libpwizlite-3.0.4/obj-i686-linux-gnu' make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build make[3]: Entering directory '/build/libpwizlite-3.0.4/obj-i686-linux-gnu' make[3]: Entering directory '/build/libpwizlite-3.0.4/obj-i686-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o [ 2%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/XMLWriter.cpp cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/XMLWriter.cpp [ 3%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o [ 5%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o [ 6%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp [ 7%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp [ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:24: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long long int; const_reference = const long long int&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long long int; reference = long long int&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long long int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long long int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long long int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp [ 11%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Base64.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:24: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = double; reference = double&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = float; const_reference = const float&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = float; reference = float&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = long long int; const_reference = const long long int&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 256 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(size_type) [with T = long long int; reference = long long int&; size_type = unsigned int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] 263 | if (index < 0 || index >= size()) | ~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long long int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 57 | Impl(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long long int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] 71 | Impl& operator=(void* cliNumericArray) | ~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long long int]': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 285 | begin_ = iterator(binaryData, true); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] 286 | end_ = iterator(binaryData, false); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 287 | cbegin_ = const_iterator(binaryData, true); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] 288 | cend_ = const_iterator(binaryData, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp [ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp [ 15%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Base64.cpp [ 16%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp [ 17%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here 501 | bool inCDATA; | ^~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds] 543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) | ^~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here 501 | bool inCDATA; | ^~~~~~~ [ 18%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:256:71: warning: unused parameter 'filepath' [-Wunused-parameter] 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:256:86: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:719:52: warning: unused parameter 'path' [-Wunused-parameter] 719 | PWIZ_API_DECL void check_path_length(const string& path) | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1.cpp [ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1Calculator.cpp [ 22%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp [ 23%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp [ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:256:71: warning: unused parameter 'filepath' [-Wunused-parameter] 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:256:86: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 256 | PWIZ_API_DECL void force_close_handles_to_filepath(const std::string& filepath, bool closeMemoryMappedSections) noexcept(true) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Filesystem.cpp:719:52: warning: unused parameter 'path' [-Wunused-parameter] 719 | PWIZ_API_DECL void check_path_length(const string& path) | ~~~~~~~~~~~~~~^~~~ [ 26%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp [ 27%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1.cpp [ 28%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ In file included from /usr/include/c++/12/iostream:39, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/include/c++/12/ostream:202:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 202 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/include/c++/12/ostream:202:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] 202 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here 346 | long long extrapol; | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/SHA1Calculator.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/utility/misc/String.cpp /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] 524 | bool useWorkerThreads) const | ~~~~~^~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp [ 35%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp [ 36%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ In file included from /usr/include/c++/12/iostream:39, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:27: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:404:26: /usr/include/c++/12/ostream:202:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 202 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits]', inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:403:33: /usr/include/c++/12/ostream:202:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized] 202 | { return _M_insert(__n); } | ~~~~~~~~~^~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here 346 | long long extrapol; | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp [ 38%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp [ 40%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:27, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] 81 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter 'position' [-Wunused-parameter] 132 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter 'position' [-Wunused-parameter] 191 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter 'position' [-Wunused-parameter] 263 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter 'attributes' [-Wunused-parameter] 500 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter 'position' [-Wunused-parameter] 501 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter 'attributes' [-Wunused-parameter] 693 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter 'position' [-Wunused-parameter] 694 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter 'position' [-Wunused-parameter] 966 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter 'position' [-Wunused-parameter] 1079 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1355 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter 'position' [-Wunused-parameter] 1356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) | ^~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1660:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1660 | bool zlib = false; // Handle numpress+zlib | ^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2169:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2169 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2438:47: warning: unused parameter 'position' [-Wunused-parameter] 2438 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2539:47: warning: unused parameter 'position' [-Wunused-parameter] 2539 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2869:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2869 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2787:47: warning: unused parameter 'position' [-Wunused-parameter] 2787 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:26, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MGF.hpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] 524 | bool useWorkerThreads) const | ~~~~~^~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Version.cpp [ 43%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.hpp:33, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp:35: /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] 81 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter 'position' [-Wunused-parameter] 132 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter 'position' [-Wunused-parameter] 191 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter 'position' [-Wunused-parameter] 263 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter 'attributes' [-Wunused-parameter] 500 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter 'position' [-Wunused-parameter] 501 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter 'attributes' [-Wunused-parameter] 693 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter 'position' [-Wunused-parameter] 694 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter 'position' [-Wunused-parameter] 966 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter 'position' [-Wunused-parameter] 1079 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter 'attributes' [-Wunused-parameter] 1355 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter 'position' [-Wunused-parameter] 1356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) | ^~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:1660:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1660 | bool zlib = false; // Handle numpress+zlib | ^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2169:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2169 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2438:47: warning: unused parameter 'position' [-Wunused-parameter] 2438 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2539:47: warning: unused parameter 'position' [-Wunused-parameter] 2539 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2869:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2869 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.cpp:2787:47: warning: unused parameter 'position' [-Wunused-parameter] 2787 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp [ 56%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.hpp:33, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:30: /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Version.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1112:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1112 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1160:56: warning: unused parameter 'msg' [-Wunused-parameter] 1160 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const | ~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1204:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1204 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1271:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1271 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here 131 | size_t byteCount; | ^~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:578:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 578 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:583:9: note: here 583 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1115:1: warning: control reaches end of non-void function [-Wreturn-type] 1115 | } | ^ [ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:30: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/memory:63, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSDataFile.cpp:35: /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp:76:119: warning: unused parameter 'config' [-Wunused-parameter] 76 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp [ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:205:51: warning: unused parameter 'attributes' [-Wunused-parameter] 205 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:206:47: warning: unused parameter 'position' [-Wunused-parameter] 206 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp [ 67%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp [ 68%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:82:51: warning: unused parameter 'attributes' [-Wunused-parameter] 82 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:83:47: warning: unused parameter 'position' [-Wunused-parameter] 83 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:91:45: warning: unused parameter 'position' [-Wunused-parameter] 91 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:116:47: warning: unused parameter 'position' [-Wunused-parameter] 116 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:161:45: warning: unused parameter 'position' [-Wunused-parameter] 161 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/stdexcept:39, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Exception.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ | ^ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter] 128 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter] 212 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter] 239 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter] 282 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter] 302 | virtual Status endElement(const std::string& name, stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter] 701 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter] 702 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter] 710 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter] 736 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter] 754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter] 778 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter] 779 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter] 796 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter] 797 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter] 885 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here 131 | size_t byteCount; | ^~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp [ 72%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp [ 73%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp [ 75%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.hpp:30, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1112:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 1112 | if ((result >= 0 && result < size()) || s == 0) | ~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1160:56: warning: unused parameter 'msg' [-Wunused-parameter] 1160 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const | ~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1204:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1204 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1271:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1271 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:30: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/stdexcept:39, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Exception.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:122:68: warning: unused parameter 'filename' [-Wunused-parameter] 122 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:129:57: warning: unused parameter 'head' [-Wunused-parameter] 129 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:132:52: warning: unused parameter 'config' [-Wunused-parameter] 132 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:197:69: warning: unused parameter 'filename' [-Wunused-parameter] 197 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:212:58: warning: unused parameter 'head' [-Wunused-parameter] 212 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:215:53: warning: unused parameter 'config' [-Wunused-parameter] 215 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:263:86: warning: unused parameter 'head' [-Wunused-parameter] 263 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:269:51: warning: unused parameter 'head' [-Wunused-parameter] 269 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:272:51: warning: unused parameter 'config' [-Wunused-parameter] 272 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:292:51: warning: unused parameter 'config' [-Wunused-parameter] 292 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:303:86: warning: unused parameter 'head' [-Wunused-parameter] 303 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:313:51: warning: unused parameter 'head' [-Wunused-parameter] 313 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:316:51: warning: unused parameter 'config' [-Wunused-parameter] 316 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:349:51: warning: unused parameter 'config' [-Wunused-parameter] 349 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:360:63: warning: unused parameter 'filename' [-Wunused-parameter] 360 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:376:52: warning: unused parameter 'head' [-Wunused-parameter] 376 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:379:52: warning: unused parameter 'config' [-Wunused-parameter] 379 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:406:52: warning: unused parameter 'config' [-Wunused-parameter] 406 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:425:62: warning: unused parameter 'filename' [-Wunused-parameter] 425 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:458:51: warning: unused parameter 'filename' [-Wunused-parameter] 458 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:459:51: warning: unused parameter 'head' [-Wunused-parameter] 459 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:460:45: warning: unused parameter 'result' [-Wunused-parameter] 460 | MSData& result, | ~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:461:41: warning: unused parameter 'runIndex' [-Wunused-parameter] 461 | int runIndex, | ~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'config' [-Wunused-parameter] 462 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:484:51: warning: unused parameter 'config' [-Wunused-parameter] 484 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:578:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 578 | if (id.find("controllerType=0 controllerNumber=1") != 0) | ^~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:583:9: note: here 583 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.cpp:1115:1: warning: control reaches end of non-void function [-Wreturn-type] 1115 | } | ^ In file included from /usr/include/c++/12/vector:64, from /usr/include/c++/12/functional:62, from /usr/include/boost/numeric/conversion/converter_policies.hpp:19, from /usr/include/boost/numeric/conversion/converter.hpp:14, from /usr/include/boost/numeric/conversion/cast.hpp:33, from /usr/include/boost/lexical_cast/detail/converter_numeric.hpp:36, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:43, from /usr/include/boost/lexical_cast.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Environment.hpp:24, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:29: In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = pwiz::msdata::SpectrumWorkerThreads::Impl::Task; _Alloc = std::allocator]', inlined from 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:251:43: /usr/include/c++/12/bits/stl_vector.h:1124:41: warning: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 1124 | return *(this->_M_impl._M_start + __n); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In static member function 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:240:41: note: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' was declared here 240 | boost::optional lruToReset; | ^~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ [ 77%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 421 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:976:47: warning: unused parameter 'position' [-Wunused-parameter] 976 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1105:47: warning: unused parameter 'position' [-Wunused-parameter] 1105 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1186:45: warning: unused parameter 'position' [-Wunused-parameter] 1186 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1234:47: warning: unused parameter 'position' [-Wunused-parameter] 1234 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1302:47: warning: unused parameter 'position' [-Wunused-parameter] 1302 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:30: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/memory:63, from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.cpp:76:119: warning: unused parameter 'config' [-Wunused-parameter] 76 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ [ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp [ 81%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp [ 83%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:25067: /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] 102 | for (int o=0;o struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp [ 86%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.hpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:205:51: warning: unused parameter 'attributes' [-Wunused-parameter] 205 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzML.cpp:206:47: warning: unused parameter 'position' [-Wunused-parameter] 206 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:24: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] 40 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] 88 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] 124 | const BaseDiffConfig& config) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:82:51: warning: unused parameter 'attributes' [-Wunused-parameter] 82 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:83:47: warning: unused parameter 'position' [-Wunused-parameter] 83 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:91:45: warning: unused parameter 'position' [-Wunused-parameter] 91 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:116:47: warning: unused parameter 'position' [-Wunused-parameter] 116 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:161:45: warning: unused parameter 'position' [-Wunused-parameter] 161 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp [ 90%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp [ 91%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/stdexcept:39, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Exception.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 92%] Linking CXX shared library libpwizlite.so cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.4 "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.74.0 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.74.0 /usr/lib/i386-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libboost_atomic.so.1.74.0 In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/References.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.4 libpwizlite.so.3 libpwizlite.so make[3]: Leaving directory '/build/libpwizlite-3.0.4/obj-i686-linux-gnu' [ 93%] Built target pwizlite-shared [ 95%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/ParamTypes.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:29: /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/libpwizlite-3.0.4/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Reader.hpp:30: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp: At global scope: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/stdexcept:39, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Exception.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:28, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 54 | class PWIZ_API_DECL const_iterator : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:29: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 88 | class PWIZ_API_DECL iterator : public std::iterator | ^~~~~~~~ /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:122:68: warning: unused parameter 'filename' [-Wunused-parameter] 122 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:129:57: warning: unused parameter 'head' [-Wunused-parameter] 129 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:132:52: warning: unused parameter 'config' [-Wunused-parameter] 132 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ [ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:197:69: warning: unused parameter 'filename' [-Wunused-parameter] 197 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:212:58: warning: unused parameter 'head' [-Wunused-parameter] 212 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:215:53: warning: unused parameter 'config' [-Wunused-parameter] 215 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:263:86: warning: unused parameter 'head' [-Wunused-parameter] 263 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:269:51: warning: unused parameter 'head' [-Wunused-parameter] 269 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:272:51: warning: unused parameter 'config' [-Wunused-parameter] 272 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:292:51: warning: unused parameter 'config' [-Wunused-parameter] 292 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:303:86: warning: unused parameter 'head' [-Wunused-parameter] 303 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:313:51: warning: unused parameter 'head' [-Wunused-parameter] 313 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:316:51: warning: unused parameter 'config' [-Wunused-parameter] 316 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:349:51: warning: unused parameter 'config' [-Wunused-parameter] 349 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:360:63: warning: unused parameter 'filename' [-Wunused-parameter] 360 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:376:52: warning: unused parameter 'head' [-Wunused-parameter] 376 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:379:52: warning: unused parameter 'config' [-Wunused-parameter] 379 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:406:52: warning: unused parameter 'config' [-Wunused-parameter] 406 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:425:62: warning: unused parameter 'filename' [-Wunused-parameter] 425 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:458:51: warning: unused parameter 'filename' [-Wunused-parameter] 458 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:459:51: warning: unused parameter 'head' [-Wunused-parameter] 459 | const string& head, | ~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:460:45: warning: unused parameter 'result' [-Wunused-parameter] 460 | MSData& result, | ~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:461:41: warning: unused parameter 'runIndex' [-Wunused-parameter] 461 | int runIndex, | ~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'config' [-Wunused-parameter] 462 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/DefaultReaderList.cpp:484:51: warning: unused parameter 'config' [-Wunused-parameter] 484 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/libpwizlite-3.0.4/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp In file included from /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] 587 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] 589 | virtual Status startElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/libpwizlite-3.0.4/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 421 | const SpectrumListPtr spectrumListPtr, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:976:47: warning: unused parameter 'position' [-Wunused-parameter] 976 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1105:47: warning: unused parameter 'position' [-Wunused-parameter] 1105 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1186:45: warning: unused parameter 'position' [-Wunused-parameter] 1186 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1234:47: warning: unused parameter 'position' [-Wunused-parameter] 1234 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/Serializer_mzXML.cpp:1302:47: warning: unused parameter 'position' [-Wunused-parameter] 1302 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ [ 98%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o cd /build/libpwizlite-3.0.4/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.4/obj-i686-linux-gnu/src -I/build/libpwizlite-3.0.4/src -I/build/libpwizlite-3.0.4/src/boost -g -O2 -ffile-prefix-map=/build/libpwizlite-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.4/src/pwiz/data/common/diff_std.cpp In file included from /usr/include/c++/12/vector:64, from /usr/include/c++/12/functional:62, from /usr/include/boost/numeric/conversion/converter_policies.hpp:19, from /usr/include/boost/numeric/conversion/converter.hpp:14, from /usr/include/boost/numeric/conversion/cast.hpp:33, from /usr/include/boost/lexical_cast/detail/converter_numeric.hpp:36, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:43, from /usr/include/boost/lexical_cast.hpp:32, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Environment.hpp:24, from /build/libpwizlite-3.0.4/src/pwiz/utility/misc/Std.hpp:29: In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = pwiz::msdata::SpectrumWorkerThreads::Impl::Task; _Alloc = std::allocator]', inlined from 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)' at /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:251:43: /usr/include/c++/12/bits/stl_vector.h:1124:41: warning: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 1124 | return *(this->_M_impl._M_start + __n); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In static member function 'static void pwiz::msdata::SpectrumWorkerThreads::Impl::work(pwiz::msdata::SpectrumWorkerThreads::Impl*, TaskWorker*)': /build/libpwizlite-3.0.4/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:240:41: note: 'lruToReset.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' was declared here 240 | boost::optional lruToReset; | ^~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~~ /build/libpwizlite-3.0.4/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) | ~~~~~^~~~ In file included from /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.cpp:25067: /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': /build/libpwizlite-3.0.4/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] 102 | for (int o=0;o