I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 28 09:46:31 +14 2021 I: pbuilder-time-stamp: 1640634391 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.BXD4gX0n/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 13 05:42:28 2021 +14 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.0~git20210119.80e82ac dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2357468/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2357468/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2357468/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=40626861efec412f88cc50c5660f576e LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2357468 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.N4D5i606rk/pbuilderrc_Yt3s --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.N4D5i606rk/b2 --logfile b2/build.log fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Dec 28 09:46 sh -> bash lrwxrwxrwx 1 root root 4 Dec 21 23:25 sh.distrib -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/2357468/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-dev, libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~), mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libbasix-dev{a} libbasix0{a} libblas-dev{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libcamd2{a} libcbor0{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcurl4{a} libcxsparse3{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real2019.2{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphblas3{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1{a} libhdf5-openmpi-cpp-103-1{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102{a} libhdf5-openmpi-hl-100{a} libhdf5-openmpi-hl-cpp-100{a} libhdf5-openmpi-hl-fortran-100{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjsoncpp24{a} libklu1{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmetis5{a} libmongoose2{a} libmpdec3{a} libmumps-5.3{a} libmumps-dev{a} libmumps-headers-dev{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real3.14{a} libpetsc-real3.14-dev{a} libpetsc3.14-dev-common{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libprocps8{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-6.1{a} libptscotch-dev{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librbio2{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.1{a} libscotch-6.1{a} libscotch-dev{a} libsigsegv2{a} libslepc-real3.14{a} libslepc-real3.14-dev{a} libsliplu1{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist6{a} libsuperlu5{a} libsz2{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack5{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-ffcx{a} python3-fiat{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-sympy{a} python3-ufl{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common ksh libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgl1-mesa-dev libglib2.0-data libgpm2 libldap-common libmail-sendmail-perl libpetsc3.14-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-pil shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 251 newly installed, 0 to remove and 0 not upgraded. Need to get 164 MB of archives. After unpacking 922 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libfido2-1 amd64 1.6.0-2 [53.3 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 openssh-client amd64 1:8.4p1-5 [929 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libgfortran-10-dev amd64 10.2.1-6 [769 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 gfortran-10 amd64 10.2.1-6 [9447 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 gfortran amd64 4:10.2.1-1 [1428 B] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libibverbs1 amd64 33.2-1 [59.4 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 33.2-1 [253 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 icu-devtools amd64 67.1-7 [201 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get: 80 http://deb.debian.org/debian bullseye/main amd64 libaec-dev amd64 1.0.4-1 [18.7 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libsuitesparseconfig5 amd64 1:5.8.1+dfsg-2 [23.0 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libamd2 amd64 1:5.8.1+dfsg-2 [35.5 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libarpack2 amd64 3.8.0-1 [103 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libblas-dev amd64 3.9.0-3 [161 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 liblapack-dev amd64 3.9.0-3 [4247 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 libarpack2-dev amd64 3.8.0-1 [117 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 libbasix0 amd64 0.0.1~git20210122.4f10ef2-2 [198 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 libeigen3-dev all 3.3.9-2 [858 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 libbasix-dev amd64 0.0.1~git20210122.4f10ef2-2 [4220 B] Get: 94 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 libboost-atomic1.74.0 amd64 1.74.0-9 [244 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 libboost-atomic1.74-dev amd64 1.74.0-9 [245 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono1.74.0 amd64 1.74.0-9 [252 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono1.74-dev amd64 1.74.0-9 [260 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono-dev amd64 1.74.0.3 [4960 B] Get: 100 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74.0 amd64 1.74.0-9 [241 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74.0 amd64 1.74.0-9 [340 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74-dev amd64 1.74.0-9 [383 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74-dev amd64 1.74.0-9 [250 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 105 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-9 [283 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74.0 amd64 1.74.0-9 [241 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74-dev amd64 1.74.0-9 [243 kB] Get: 108 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-9 [304 kB] Get: 109 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get: 110 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74.0 amd64 1.74.0-9 [516 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 libicu-dev amd64 67.1-7 [9597 kB] Get: 112 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74-dev amd64 1.74.0-9 [588 kB] Get: 113 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams1.74-dev amd64 1.74.0-9 [273 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams-dev amd64 1.74.0.3 [4316 B] Get: 115 http://deb.debian.org/debian bullseye/main amd64 libboost-math1.74.0 amd64 1.74.0-9 [521 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 libboost-math1.74-dev amd64 1.74.0-9 [599 kB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 libboost-math-dev amd64 1.74.0.3 [4532 B] Get: 118 http://deb.debian.org/debian bullseye/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get: 119 http://deb.debian.org/debian bullseye/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get: 120 http://deb.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get: 123 http://deb.debian.org/debian bullseye/main amd64 librdmacm1 amd64 33.2-1 [68.9 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 130 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1 [311 kB] Get: 131 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1 [772 kB] Get: 132 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get: 133 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 460.91.03-1 [26.9 kB] Get: 134 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get: 135 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] Get: 136 http://deb.debian.org/debian bullseye/main amd64 libpmix2 amd64 4.0.0-4.1 [552 kB] Get: 137 http://deb.debian.org/debian bullseye/main amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [649 kB] Get: 138 http://deb.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.1.0-10 [2370 kB] Get: 139 http://deb.debian.org/debian bullseye/main amd64 libboost-mpi1.74.0 amd64 1.74.0-9 [281 kB] Get: 140 http://deb.debian.org/debian bullseye/main amd64 openmpi-common all 4.1.0-10 [179 kB] Get: 141 http://deb.debian.org/debian bullseye/main amd64 libnl-3-dev amd64 3.4.0-1+b1 [102 kB] Get: 142 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-dev amd64 3.4.0-1+b1 [176 kB] Get: 143 http://deb.debian.org/debian bullseye/main amd64 libibverbs-dev amd64 33.2-1 [487 kB] Get: 144 http://deb.debian.org/debian bullseye/main amd64 libnuma-dev amd64 2.0.12-1+b1 [39.3 kB] Get: 145 http://deb.debian.org/debian bullseye/main amd64 libltdl7 amd64 2.4.6-15 [391 kB] Get: 146 http://deb.debian.org/debian bullseye/main amd64 libltdl-dev amd64 2.4.6-15 [162 kB] Get: 147 http://deb.debian.org/debian bullseye/main amd64 libhwloc-dev amd64 2.4.1+dfsg-1 [231 kB] Get: 148 http://deb.debian.org/debian bullseye/main amd64 libevent-2.1-7 amd64 2.1.12-stable-1 [188 kB] Get: 149 http://deb.debian.org/debian bullseye/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-1 [110 kB] Get: 150 http://deb.debian.org/debian bullseye/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-1 [64.1 kB] Get: 151 http://deb.debian.org/debian bullseye/main amd64 libevent-dev amd64 2.1.12-stable-1 [311 kB] Get: 152 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 153 http://deb.debian.org/debian bullseye/main amd64 libpmix-dev amd64 4.0.0-4.1 [655 kB] Get: 154 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 155 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u1 [232 kB] Get: 156 http://deb.debian.org/debian bullseye/main amd64 openmpi-bin amd64 4.1.0-10 [238 kB] Get: 157 http://deb.debian.org/debian bullseye/main amd64 libopenmpi-dev amd64 4.1.0-10 [1192 kB] Get: 158 http://deb.debian.org/debian bullseye/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get: 159 http://deb.debian.org/debian bullseye/main amd64 libboost-mpi1.74-dev amd64 1.74.0-9 [303 kB] Get: 160 http://deb.debian.org/debian bullseye/main amd64 libboost-mpi-dev amd64 1.74.0.3 [4420 B] Get: 161 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get: 162 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74-dev amd64 1.74.0-9 [386 kB] Get: 163 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get: 164 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization-dev amd64 1.74.0.3 [4560 B] Get: 165 http://deb.debian.org/debian bullseye/main amd64 libboost-thread1.74.0 amd64 1.74.0-9 [279 kB] Get: 166 http://deb.debian.org/debian bullseye/main amd64 libboost-thread1.74-dev amd64 1.74.0-9 [290 kB] Get: 167 http://deb.debian.org/debian bullseye/main amd64 libboost-thread-dev amd64 1.74.0.3 [4356 B] Get: 168 http://deb.debian.org/debian bullseye/main amd64 libboost-timer1.74.0 amd64 1.74.0-9 [250 kB] Get: 169 http://deb.debian.org/debian bullseye/main amd64 libboost-timer1.74-dev amd64 1.74.0-9 [254 kB] Get: 170 http://deb.debian.org/debian bullseye/main amd64 libboost-timer-dev amd64 1.74.0.3 [4456 B] Get: 171 http://deb.debian.org/debian bullseye/main amd64 libbtf1 amd64 1:5.8.1+dfsg-2 [24.8 kB] Get: 172 http://deb.debian.org/debian bullseye/main amd64 libcamd2 amd64 1:5.8.1+dfsg-2 [36.9 kB] Get: 173 http://deb.debian.org/debian bullseye/main amd64 libccolamd2 amd64 1:5.8.1+dfsg-2 [38.8 kB] Get: 174 http://deb.debian.org/debian bullseye/main amd64 libcolamd2 amd64 1:5.8.1+dfsg-2 [32.1 kB] Get: 175 http://deb.debian.org/debian bullseye/main amd64 libmetis5 amd64 5.1.0.dfsg-7 [171 kB] Get: 176 http://deb.debian.org/debian bullseye/main amd64 libcholmod3 amd64 1:5.8.1+dfsg-2 [339 kB] Get: 177 http://deb.debian.org/debian bullseye/main amd64 libcombblas1.16.0 amd64 1.6.2-6 [283 kB] Get: 178 http://deb.debian.org/debian bullseye/main amd64 libcxsparse3 amd64 1:5.8.1+dfsg-2 [80.0 kB] Get: 179 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-103-1 amd64 1.10.6+repack-4+deb11u1 [1236 kB] Get: 180 http://deb.debian.org/debian bullseye/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get: 181 http://deb.debian.org/debian bullseye/main amd64 libfftw3-long3 amd64 3.3.8-2 [319 kB] Get: 182 http://deb.debian.org/debian bullseye/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get: 183 http://deb.debian.org/debian bullseye/main amd64 libfftw3-mpi3 amd64 3.3.8-2 [66.4 kB] Get: 184 http://deb.debian.org/debian bullseye/main amd64 libsuperlu-dist6 amd64 6.2.0+dfsg1-3 [417 kB] Get: 185 http://deb.debian.org/debian bullseye/main amd64 libhypre amd64 2.18.2-1 [1415 kB] Get: 186 http://deb.debian.org/debian bullseye/main amd64 libklu1 amd64 1:5.8.1+dfsg-2 [86.3 kB] Get: 187 http://deb.debian.org/debian bullseye/main amd64 mpi-default-bin amd64 1.13 [4672 B] Get: 188 http://deb.debian.org/debian bullseye/main amd64 libscalapack-openmpi2.1 amd64 2.1.0-4 [1539 kB] Get: 189 http://deb.debian.org/debian bullseye/main amd64 libmumps-5.3 amd64 5.3.5-2 [1611 kB] Get: 190 http://deb.debian.org/debian bullseye/main amd64 libptscotch-6.1 amd64 6.1.0-2 [611 kB] Get: 191 http://deb.debian.org/debian bullseye/main amd64 libsuperlu5 amd64 5.2.2+dfsg1-2 [163 kB] Get: 192 http://deb.debian.org/debian bullseye/main amd64 libumfpack5 amd64 1:5.8.1+dfsg-2 [246 kB] Get: 193 http://deb.debian.org/debian bullseye/main amd64 libpetsc-real3.14 amd64 3.14.5+dfsg1-4 [5683 kB] Get: 194 http://deb.debian.org/debian bullseye/main amd64 libparpack2 amd64 3.8.0-1 [99.9 kB] Get: 195 http://deb.debian.org/debian bullseye/main amd64 libslepc-real3.14 amd64 3.14.2+dfsg1-1 [1034 kB] Get: 196 http://deb.debian.org/debian bullseye/main amd64 libdolfinx-real2019.2 amd64 2019.2.0~git20210130.c14cb0a-5 [647 kB] Get: 197 http://deb.debian.org/debian bullseye/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 198 http://deb.debian.org/debian bullseye/main amd64 libpetsc3.14-dev-common all 3.14.5+dfsg1-4 [206 kB] Get: 199 http://deb.debian.org/debian bullseye/main amd64 libgraphblas3 amd64 1:5.8.1+dfsg-2 [4638 kB] Get: 200 http://deb.debian.org/debian bullseye/main amd64 libldl2 amd64 1:5.8.1+dfsg-2 [24.4 kB] Get: 201 http://deb.debian.org/debian bullseye/main amd64 libmongoose2 amd64 1:5.8.1+dfsg-2 [46.9 kB] Get: 202 http://deb.debian.org/debian bullseye/main amd64 librbio2 amd64 1:5.8.1+dfsg-2 [39.9 kB] Get: 203 http://deb.debian.org/debian bullseye/main amd64 libspqr2 amd64 1:5.8.1+dfsg-2 [81.6 kB] Get: 204 http://deb.debian.org/debian bullseye/main amd64 libsliplu1 amd64 1:5.8.1+dfsg-2 [49.6 kB] Get: 205 http://deb.debian.org/debian bullseye/main amd64 libsuitesparse-dev amd64 1:5.8.1+dfsg-2 [5115 kB] Get: 206 http://deb.debian.org/debian bullseye/main amd64 libsuperlu-dev amd64 5.2.2+dfsg1-2 [21.4 kB] Get: 207 http://deb.debian.org/debian bullseye/main amd64 libhypre-dev amd64 2.18.2-1 [154 kB] Get: 208 http://deb.debian.org/debian bullseye/main amd64 libscotch-6.1 amd64 6.1.0-2 [373 kB] Get: 209 http://deb.debian.org/debian bullseye/main amd64 libscotch-dev amd64 6.1.0-2 [1383 kB] Get: 210 http://deb.debian.org/debian bullseye/main amd64 libptscotch-dev amd64 6.1.0-2 [1234 kB] Get: 211 http://deb.debian.org/debian bullseye/main amd64 libscalapack-openmpi-dev amd64 2.1.0-4 [13.7 kB] Get: 212 http://deb.debian.org/debian bullseye/main amd64 libscalapack-mpi-dev amd64 2.1.0-4 [9732 B] Get: 213 http://deb.debian.org/debian bullseye/main amd64 libmumps-headers-dev all 5.3.5-2 [34.1 kB] Get: 214 http://deb.debian.org/debian bullseye/main amd64 libmumps-dev amd64 5.3.5-2 [1477 kB] Get: 215 http://deb.debian.org/debian bullseye/main amd64 libfftw3-quad3 amd64 3.3.8-2 [558 kB] Get: 216 http://deb.debian.org/debian bullseye/main amd64 libfftw3-bin amd64 3.3.8-2 [50.7 kB] Get: 217 http://deb.debian.org/debian bullseye/main amd64 libfftw3-dev amd64 3.3.8-2 [2106 kB] Get: 218 http://deb.debian.org/debian bullseye/main amd64 libfftw3-mpi-dev amd64 3.3.8-2 [66.6 kB] Get: 219 http://deb.debian.org/debian bullseye/main amd64 libssl-dev amd64 1.1.1k-1+deb11u1 [1810 kB] Get: 220 http://deb.debian.org/debian bullseye/main amd64 opencl-c-headers all 3.0~2020.12.18-1 [41.8 kB] Get: 221 http://deb.debian.org/debian bullseye/main amd64 opencl-clhpp-headers all 3.0~2.0.13-1 [41.5 kB] Get: 222 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-opencl-dev amd64 2.2.14-2 [11.3 kB] Get: 223 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-fortran-102 amd64 1.10.6+repack-4+deb11u1 [105 kB] Get: 224 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.7 kB] Get: 225 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-hl-fortran-100 amd64 1.10.6+repack-4+deb11u1 [56.8 kB] Get: 226 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-cpp-103-1 amd64 1.10.6+repack-4+deb11u1 [142 kB] Get: 227 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-hl-cpp-100 amd64 1.10.6+repack-4+deb11u1 [37.8 kB] Get: 228 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 229 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB] Get: 230 http://deb.debian.org/debian bullseye/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Get: 231 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-dev amd64 1.10.6+repack-4+deb11u1 [2498 kB] Get: 232 http://deb.debian.org/debian bullseye/main amd64 libhdf5-mpi-dev amd64 1.10.6+repack-4+deb11u1 [32.5 kB] Get: 233 http://deb.debian.org/debian bullseye/main amd64 libsuperlu-dist-dev amd64 6.2.0+dfsg1-3 [251 kB] Get: 234 http://deb.debian.org/debian bullseye/main amd64 libpetsc-real3.14-dev amd64 3.14.5+dfsg1-4 [6316 kB] Get: 235 http://deb.debian.org/debian bullseye/main amd64 libparpack2-dev amd64 3.8.0-1 [109 kB] Get: 236 http://deb.debian.org/debian bullseye/main amd64 libslepc-real3.14-dev amd64 3.14.2+dfsg1-1 [4442 kB] Get: 237 http://deb.debian.org/debian bullseye/main amd64 libdolfinx-real-dev amd64 2019.2.0~git20210130.c14cb0a-5 [49.5 kB] Get: 238 http://deb.debian.org/debian bullseye/main amd64 libxml2-dev amd64 2.9.10+dfsg-6.7 [791 kB] Get: 239 http://deb.debian.org/debian bullseye/main amd64 python3-cffi-backend amd64 1.14.5-1 [85.8 kB] Get: 240 http://deb.debian.org/debian bullseye/main amd64 python3-ply all 3.11-4 [65.5 kB] Get: 241 http://deb.debian.org/debian bullseye/main amd64 python3-pycparser all 2.20-3 [74.5 kB] Get: 242 http://deb.debian.org/debian bullseye/main amd64 python3-cffi all 1.14.5-1 [87.9 kB] Get: 243 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 244 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 245 http://deb.debian.org/debian bullseye/main amd64 python3-mpmath all 1.2.1-1 [418 kB] Get: 246 http://deb.debian.org/debian bullseye/main amd64 python3-sympy all 1.7.1-3 [4031 kB] Get: 247 http://deb.debian.org/debian bullseye/main amd64 python3-fiat all 2019.2.0~git20210116.0439689-2 [70.6 kB] Get: 248 http://deb.debian.org/debian bullseye/main amd64 python3-ufl all 2019.2.0~git20210211.d60cd09-1 [156 kB] Get: 249 http://deb.debian.org/debian bullseye/main amd64 python3-basix amd64 0.0.1~git20210122.4f10ef2-2 [89.0 kB] Get: 250 http://deb.debian.org/debian bullseye/main amd64 python3-ffcx all 2019.2.0~git20210122.22ca4c0-2 [106 kB] Get: 251 http://deb.debian.org/debian bullseye/main amd64 libdolfinx-dev all 2019.2.0~git20210130.c14cb0a-5 [149 kB] Fetched 164 MB in 5s (35.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20522 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. 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Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20943 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../002-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../006-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../009-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../010-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../011-libedit2_3.1-20191231-2+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-2+b1) ... Selecting previously unselected package libcbor0:amd64. Preparing to unpack .../012-libcbor0_0.5.0+dfsg-2_amd64.deb ... Unpacking libcbor0:amd64 (0.5.0+dfsg-2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../013-libfido2-1_1.6.0-2_amd64.deb ... Unpacking libfido2-1:amd64 (1.6.0-2) ... Selecting previously unselected package openssh-client. Preparing to unpack .../014-openssh-client_1%3a8.4p1-5_amd64.deb ... Unpacking openssh-client (1:8.4p1-5) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../015-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../021-cmake-data_3.18.4-2+deb11u1_all.deb ... Unpacking cmake-data (3.18.4-2+deb11u1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../022-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../023-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../024-libarchive13_3.4.3-2+b1_amd64.deb ... Unpacking libarchive13:amd64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../025-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../026-libsasl2-modules-db_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../027-libsasl2-2_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../028-libldap-2.4-2_2.4.57+dfsg-3_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../029-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../030-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../031-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../032-libssh2-1_1.9.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../033-libcurl4_7.74.0-1.3+deb11u1_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Selecting previously unselected package libjsoncpp24:amd64. Preparing to unpack .../034-libjsoncpp24_1.9.4-4_amd64.deb ... Unpacking libjsoncpp24:amd64 (1.9.4-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../035-librhash0_1.4.1-2_amd64.deb ... Unpacking librhash0:amd64 (1.4.1-2) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../036-libuv1_1.40.0-2_amd64.deb ... Unpacking libuv1:amd64 (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../037-cmake_3.18.4-2+deb11u1_amd64.deb ... Unpacking cmake (3.18.4-2+deb11u1) ... Selecting previously unselected package libdebhelper-perl. 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Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libfftw3-single3:amd64 (3.3.8-2) ... Setting up libboost-atomic1.74.0:amd64 (1.74.0-9) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libboost-program-options1.74.0:amd64 (1.74.0-9) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libboost-chrono1.74-dev:amd64 (1.74.0-9) ... Setting up libcbor0:amd64 (0.5.0+dfsg-2) ... Setting up libldl2:amd64 (1:5.8.1+dfsg-2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libfftw3-long3:amd64 (3.3.8-2) ... Setting up gettext-base (0.21-4) ... Setting up libboost-filesystem1.74.0:amd64 (1.74.0-9) ... Setting up libmetis5:amd64 (5.1.0.dfsg-7) ... Setting up file (1:5.39-3) ... Setting up libbtf1:amd64 (1:5.8.1+dfsg-2) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libboost-program-options1.74-dev:amd64 (1.74.0-9) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.40.0-2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libboost-program-options-dev:amd64 (1.74.0.3) ... Setting up libx11-data (2:1.7.2-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.0.6-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libboost-system1.74-dev:amd64 (1.74.0-9) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libfftw3-quad3:amd64 (3.3.8-2) ... Setting up libboost-regex1.74.0:amd64 (1.74.0-9) ... Setting up opencl-clhpp-headers (3.0~2.0.13-1) ... Setting up libssl-dev:amd64 (1.1.1k-1+deb11u1) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libevent-2.1-7:amd64 (2.1.12-stable-1) ... Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-7) ... Setting up pkg-config (0.29.2-1) ... Setting up libltdl7:amd64 (2.4.6-15) ... Setting up opencl-c-headers (3.0~2020.12.18-1) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up libboost-atomic1.74-dev:amd64 (1.74.0-9) ... Setting up libmumps-headers-dev (5.3.5-2) ... Setting up libboost-math1.74.0:amd64 (1.74.0-9) ... Setting up libboost-serialization1.74.0:amd64 (1.74.0-9) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up openmpi-common (4.1.0-10) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:amd64 (10.2.1-6) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libcxsparse3:amd64 (1:5.8.1+dfsg-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libboost-math1.74-dev:amd64 (1.74.0-9) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libboost-filesystem1.74-dev:amd64 (1.74.0-9) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libboost-date-time1.74.0:amd64 (1.74.0-9) ... Setting up libscotch-6.1:amd64 (6.1.0-2) ... Setting up libfido2-1:amd64 (1.6.0-2) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libboost-timer1.74.0:amd64 (1.74.0-9) ... Setting up libicu-dev:amd64 (67.1-7) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libsuitesparseconfig5:amd64 (1:5.8.1+dfsg-2) ... Setting up libboost-filesystem-dev:amd64 (1.74.0.3) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libblas-dev:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.0.4-1) ... Setting up librbio2:amd64 (1:5.8.1+dfsg-2) ... Setting up libboost-thread1.74.0:amd64 (1.74.0-9) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-1) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libcolamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libboost-chrono-dev:amd64 (1.74.0.3) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libboost-math-dev:amd64 (1.74.0.3) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libaec-dev:amd64 (1.0.4-1) ... Setting up libarpack2:amd64 (3.8.0-1) ... Setting up libjpeg-dev:amd64 (1:2.0.6-4) ... Setting up libsuperlu5:amd64 (5.2.2+dfsg1-2) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnuma-dev:amd64 (2.0.12-1+b1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libsliplu1:amd64 (1:5.8.1+dfsg-2) ... Setting up libcamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libmongoose2:amd64 (1:5.8.1+dfsg-2) ... Setting up libxml2-dev:amd64 (2.9.10+dfsg-6.7) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up liblapack-dev:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.3.9-2) ... Setting up gfortran-10 (10.2.1-6) ... Setting up libboost-timer1.74-dev:amd64 (1.74.0-9) ... Setting up ocl-icd-opencl-dev:amd64 (2.2.14-2) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:amd64 (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:amd64 (1.74.0-9) ... Setting up libnl-3-dev:amd64 (3.4.0-1+b1) ... Setting up groff-base (1.22.4-6) ... Setting up libklu1:amd64 (1:5.8.1+dfsg-2) ... Setting up libccolamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up libx11-6:amd64 (2:1.7.2-1) ... Setting up libsuperlu-dev:amd64 (5.2.2+dfsg1-2) ... Setting up libbasix-dev:amd64 (0.0.1~git20210122.4f10ef2-2) ... Setting up libfftw3-dev:amd64 (3.3.8-2) ... Setting up libcholmod3:amd64 (1:5.8.1+dfsg-2) ... Setting up libboost-timer-dev:amd64 (1.74.0.3) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspqr2:amd64 (1:5.8.1+dfsg-2) ... Setting up libibverbs1:amd64 (33.2-1) ... Setting up libarpack2-dev:amd64 (3.8.0-1) ... Setting up ibverbs-providers:amd64 (33.2-1) ... Setting up openssh-client (1:8.4p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:amd64 (460.91.03-1) ... Setting up libboost-iostreams1.74-dev:amd64 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Setting up libboost-date-time1.74-dev:amd64 (1.74.0-9) ... Setting up libltdl-dev:amd64 (2.4.6-15) ... Setting up libumfpack5:amd64 (1:5.8.1+dfsg-2) ... Setting up libboost-serialization-dev:amd64 (1.74.0.3) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up libboost-thread1.74-dev:amd64 (1.74.0-9) ... Setting up libhwloc-dev:amd64 (2.4.1+dfsg-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libboost-thread-dev:amd64 (1.74.0.3) ... Setting up librdmacm1:amd64 (33.2-1) ... Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Setting up libsuitesparse-dev:amd64 (1:5.8.1+dfsg-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3) ... Setting up libibverbs-dev:amd64 (33.2-1) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up libpetsc3.14-dev-common (3.14.5+dfsg1-4) ... Setting up python3-mpmath (1.2.1-1) ... Setting up python3-cffi-backend:amd64 (1.14.5-1) ... Setting up python3-basix (0.0.1~git20210122.4f10ef2-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up libfabric1 (1.11.0-2) ... Setting up python3-sympy (1.7.1-3) ... Setting up libpmix2:amd64 (4.0.0-4.1) ... Setting up libopenmpi3:amd64 (4.1.0-10) ... Setting up python3-ply (3.11-4) ... Setting up libboost-mpi1.74.0 (1.74.0-9) ... Setting up libptscotch-6.1:amd64 (6.1.0-2) ... Setting up libfftw3-mpi3:amd64 (3.3.8-2) ... Setting up python3-pycparser (2.20-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up libpmix-dev:amd64 (4.0.0-4.1) ... Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up python3-fiat (2019.2.0~git20210116.0439689-2) ... Setting up libparpack2:amd64 (3.8.0-1) ... Setting up libcombblas1.16.0:amd64 (1.6.2-6) ... Setting up python3-ufl (2019.2.0~git20210211.d60cd09-1) ... Setting up python3-cffi (1.14.5-1) ... Setting up libfftw3-mpi-dev:amd64 (3.3.8-2) ... Setting up mpi-default-bin (1.13) ... Setting up python3-ffcx (2019.2.0~git20210122.22ca4c0-2) ... Setting up libhdf5-openmpi-fortran-102:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libhdf5-openmpi-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libsuperlu-dist6:amd64 (6.2.0+dfsg1-3) ... Setting up libopenmpi-dev:amd64 (4.1.0-10) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-cpp-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libhdf5-openmpi-hl-cpp-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libhdf5-openmpi-hl-fortran-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libscalapack-openmpi2.1:amd64 (2.1.0-4) ... Setting up libhypre:amd64 (2.18.2-1) ... Setting up libsuperlu-dist-dev:amd64 (6.2.0+dfsg1-3) ... Setting up libscalapack-openmpi-dev:amd64 (2.1.0-4) ... Setting up libmumps-5.3:amd64 (5.3.5-2) ... Setting up mpi-default-dev (1.13) ... Setting up libscalapack-mpi-dev:amd64 (2.1.0-4) ... Setting up libhdf5-openmpi-dev (1.10.6+repack-4+deb11u1) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libmumps-dev:amd64 (5.3.5-2) ... Setting up libscotch-dev (6.1.0-2) ... Setting up libboost-mpi1.74-dev (1.74.0-9) ... Setting up libparpack2-dev:amd64 (3.8.0-1) ... Setting up libpetsc-real3.14:amd64 (3.14.5+dfsg1-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.14.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.14 (libpetsc.so.3.14) in auto mode Setting up libhypre-dev:amd64 (2.18.2-1) ... Setting up libptscotch-dev (6.1.0-2) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libhdf5-mpi-dev (1.10.6+repack-4+deb11u1) ... Setting up libslepc-real3.14 (3.14.2+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.14.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.14 (libslepc.so.3.14) in auto mode Setting up libdolfinx-real2019.2:amd64 (2019.2.0~git20210130.c14cb0a-5) ... Setting up libpetsc-real3.14-dev:amd64 (3.14.5+dfsg1-4) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.14.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.14 (petsc3.14) in auto mode Setting up libslepc-real3.14-dev (3.14.2+dfsg1-1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.14.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.14 (slepc3.14) in auto mode Setting up libdolfinx-real-dev:amd64 (2019.2.0~git20210130.c14cb0a-5) ... Setting up libdolfinx-dev (2019.2.0~git20210130.c14cb0a-5) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Name or service not known I: Running cd /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.0~git20210119.80e82ac-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_configure -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ../src -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /usr/share/dolfinx/cmake/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /usr/share/dolfinx/cmake/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:13 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_program_options-1.74.0 -- [x] libboost_program_options.so.1.74.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: program_options -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' [ 11%] Generating Poisson.c ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Poisson.ufl [ 22%] Generating Elasticity.c ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Elasticity.ufl cd "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= Dependee "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" is newer than depender "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/depend.internal". 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Scanning dependencies of target dolfinx-scaling-test make[3]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' [ 33%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem 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-I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -std=c++17 -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/elasticity_problem.cpp" [ 66%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK 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-c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/Elasticity.c" [ 88%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat 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-Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib: /usr/lib/x86_64-linux-gnu/libdolfinx_real.so.2019.2.9.99 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles" 0 make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu ==== elasticity weak scaling (8 processes with ndofs=10000) ==== UnitCube (29x26x32) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: weak Num processes: 8 Num cells 144768 Total degrees of freedom: 80190 Average degrees of freedom per process: 10023 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.39301 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 8 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 8 MPI processes type: bjacobi number of blocks = 8 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.51357 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=504, cols=504, bs=6 package used to perform factorization: petsc total: nonzeros=212832, allocated nonzeros=212832 using I-node routines: found 145 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=504, cols=504, bs=6 total: nonzeros=140616, allocated nonzeros=140616 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 168 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=504, cols=504, bs=6 total: nonzeros=140616, allocated nonzeros=140616 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 168 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.170516, max = 1.87568 eigenvalues estimate via cg min 0.026137, max 1.70516 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=6408, cols=6408, bs=6 total: nonzeros=1202688, allocated nonzeros=1202688 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 212 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.260809, max = 2.86889 eigenvalues estimate via cg min 0.0488371, max 2.60809 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3397 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3397 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 6.521423 6.521423 Build dofmap data | 2 0.239421 0.478842 Build sparsity | 1 0.022280 0.022280 Compute SCOTCH graph re-ordering | 2 0.002119 0.004239 Compute dof reordering map | 2 0.015346 0.030692 Compute entities of dim = 1 | 1 0.616229 0.616229 Compute entities of dim = 2 | 1 0.465982 0.465982 Compute graph partition (SCOTCH) | 1 5.248529 5.248529 Compute local part of mesh dual graph | 1 0.048584 0.048584 Compute local-to-local map | 1 0.000641 0.000641 Compute non-local part of mesh dual graph | 1 0.077477 0.077477 Compute-local-to-global links for global/local adjacency list | 1 0.000464 0.000464 Distribute in graph creation AdjacencyList | 1 0.029177 0.029177 Extract partition boundaries from SCOTCH graph | 1 0.000800 0.000800 Fetch float data from remote processes | 1 0.043512 0.043512 Get SCOTCH graph data | 1 0.000011 0.000011 Init dofmap from element dofmap | 2 0.006818 0.013635 PETSc Krylov solver | 1 11.627501 11.627501 SCOTCH: call SCOTCH_dgraphBuild | 1 0.019991 0.019991 SCOTCH: call SCOTCH_dgraphHalo | 1 0.021913 0.021913 SCOTCH: call SCOTCH_dgraphPart | 1 5.204147 5.204147 SCOTCH: call SCOTCH_graphBuild | 2 0.000007 0.000015 SCOTCH: call SCOTCH_graphOrder | 2 0.001968 0.003936 SparsityPattern::assemble | 1 0.204184 0.204184 TOPOLOGY: Create sets | 1 0.072471 0.072471 ZZZ Assemble matrix | 1 0.525637 0.525637 ZZZ Assemble vector | 1 0.028859 0.028859 ZZZ Create Mesh | 1 6.522029 6.522029 ZZZ Create RHS function | 1 0.113675 0.113675 ZZZ Create boundary conditions | 1 0.070414 0.070414 ZZZ Create forms | 1 0.000095 0.000095 ZZZ Create mesh entity permutations | 1 1.109259 1.109259 ZZZ Create near-nullspace | 1 0.611219 0.611219 ZZZ FunctionSpace | 1 0.177944 0.177944 ZZZ Solve | 1 11.745984 11.745984 *** Number of Krylov iterations: 16 *** Solution norm: 6.02584e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 8 processors, by pbuilder2 Tue Dec 28 09:51:37 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 2.150e+01 1.001 2.149e+01 Objects: 3.780e+02 1.005 3.762e+02 Flop: 2.632e+08 1.265 2.223e+08 1.778e+09 Flop/sec: 1.224e+07 1.266 1.034e+07 8.275e+07 MPI Messages: 2.588e+03 1.726 1.964e+03 1.571e+04 MPI Message Lengths: 1.349e+07 1.718 5.074e+03 7.973e+07 MPI Reductions: 6.490e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.1490e+01 100.0% 1.7782e+09 100.0% 1.571e+04 100.0% 5.074e+03 100.0% 6.420e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 1.2577e+00 1.3 0.00e+00 0.0 8.7e+02 4.0e+00 9.5e+01 5 0 6 0 15 5 0 6 0 15 0 BuildTwoSidedF 76 1.0 9.5951e-01 1.6 0.00e+00 0.0 4.3e+02 5.4e+04 7.6e+01 3 0 3 29 12 3 0 3 29 12 0 MatMult 192 1.0 2.4229e+00 1.1 1.22e+08 1.1 8.0e+03 3.5e+03 0.0e+00 11 51 51 35 0 11 51 51 35 0 377 MatMultAdd 34 1.0 4.6313e-01 1.2 8.70e+06 1.1 8.0e+02 1.1e+03 0.0e+00 2 4 5 1 0 2 4 5 1 0 144 MatMultTranspose 34 1.0 3.8731e-01 1.5 8.72e+06 1.1 8.0e+02 1.1e+03 0.0e+00 1 4 5 1 0 1 4 5 1 0 172 MatSolve 17 0.0 1.3446e-02 0.0 7.23e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 538 MatLUFactorSym 1 1.0 2.4619e-021314.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 9.8987e-0242759.1 5.61e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 567 MatScale 6 1.0 1.6918e-02 1.9 6.18e+05 1.1 8.4e+01 9.7e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 281 MatResidual 34 1.0 4.5105e-01 1.2 2.11e+07 1.1 1.4e+03 3.3e+03 0.0e+00 2 9 9 6 0 2 9 9 6 0 348 MatAssemblyBegin 41 1.0 6.1420e-01 1.8 0.00e+00 0.0 4.3e+02 5.4e+04 1.6e+01 2 0 3 29 2 2 0 3 29 2 0 MatAssemblyEnd 41 1.0 1.1981e+00 1.1 1.61e+05 2.2 9.9e+02 3.4e+02 7.0e+01 5 0 6 0 11 5 0 6 0 11 1 MatGetRowIJ 1 0.0 1.5971e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 4.8803e-01 1.0 0.00e+00 0.0 4.9e+01 3.2e+04 3.0e+01 2 0 0 2 5 2 0 0 2 5 0 MatGetOrdering 1 0.0 3.9551e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.3570e-01 1.2 0.00e+00 0.0 6.5e+02 6.4e+02 9.0e+00 1 0 4 1 1 1 0 4 1 1 0 MatZeroEntries 2 1.0 5.7425e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 6.3867e-02 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 4.0840e-02 1.6 6.68e+04 1.1 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 12 MatTranspose 4 1.0 1.8024e-02 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 5.6228e-01 1.1 0.00e+00 0.0 4.3e+02 6.1e+03 2.0e+01 3 0 3 3 3 3 0 3 3 3 0 MatMatMultNum 2 1.0 8.2010e-02 1.6 7.43e+06 1.2 8.4e+01 1.9e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 662 MatPtAPSymbolic 2 1.0 8.4293e-01 1.1 0.00e+00 0.0 5.1e+02 3.0e+04 1.4e+01 4 0 3 19 2 4 0 3 19 2 0 MatPtAPNumeric 2 1.0 9.8243e-01 1.0 6.75e+07 1.2 3.8e+02 3.6e+04 1.2e+01 5 28 2 17 2 5 28 2 17 2 503 MatTrnMatMultSym 1 1.0 3.5150e-01 1.0 0.00e+00 0.0 2.7e+02 1.9e+04 1.3e+01 2 0 2 7 2 2 0 2 7 2 0 MatGetLocalMat 7 1.0 1.4109e-02 3.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 1.9128e-01 1.3 0.00e+00 0.0 5.9e+02 2.7e+04 0.0e+00 1 0 4 20 0 1 0 4 20 0 0 VecDot 36 1.0 4.2306e-01 1.1 7.43e+05 1.1 0.0e+00 0.0e+00 3.6e+01 2 0 0 0 6 2 0 0 0 6 14 VecMDot 20 1.0 3.1281e-01 1.6 1.23e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 30 VecTDot 74 1.0 9.9312e-01 1.1 1.13e+06 1.1 0.0e+00 0.0e+00 7.4e+01 4 0 0 0 11 4 0 0 0 12 9 VecNorm 68 1.0 9.3310e-01 1.4 9.88e+05 1.1 0.0e+00 0.0e+00 6.8e+01 4 0 0 0 10 4 0 0 0 11 8 VecScale 28 1.0 6.7748e-04 1.6 1.85e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2116 VecCopy 116 1.0 1.6951e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 179 1.0 7.8217e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 83 1.0 4.4951e-03 1.2 1.32e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2272 VecAYPX 237 1.0 1.4952e-02 2.6 2.03e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1053 VecAXPBYCZ 68 1.0 1.0520e-02 4.4 1.90e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1399 VecMAXPY 22 1.0 2.3316e-03 1.5 1.46e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4828 VecAssemblyBegin 61 1.0 4.1362e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 2 0 0 0 9 2 0 0 0 9 0 VecAssemblyEnd 61 1.0 2.9204e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 180 1.0 7.4000e-03 1.6 1.01e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1053 VecScatterBegin 327 1.0 2.2296e-02 1.8 0.00e+00 0.0 1.2e+04 2.7e+03 0.0e+00 0 0 79 42 0 0 0 79 42 0 0 VecScatterEnd 327 1.0 3.2715e+00 1.1 3.24e+04 3.7 0.0e+00 0.0e+00 0.0e+00 15 0 0 0 0 15 0 0 0 0 0 VecSetRandom 2 1.0 7.2576e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 3.6761e-01 1.5 5.55e+05 1.1 0.0e+00 0.0e+00 2.8e+01 1 0 0 0 4 1 0 0 0 4 12 SFSetGraph 19 1.0 6.8168e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 4.8813e-01 1.3 0.00e+00 0.0 1.3e+03 3.4e+02 1.9e+01 2 0 8 1 3 2 0 8 1 3 0 SFBcastOpBegin 303 1.0 2.0471e-02 1.9 0.00e+00 0.0 1.2e+04 2.7e+03 0.0e+00 0 0 77 41 0 0 0 77 41 0 0 SFBcastOpEnd 303 1.0 3.0673e+00 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 14 0 0 0 0 14 0 0 0 0 0 SFReduceBegin 35 1.0 9.1916e-04 1.5 0.00e+00 0.0 8.4e+02 1.1e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 35 1.0 3.7561e-01 1.5 3.24e+04 3.7 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 SFPack 338 1.0 4.0904e-03 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 338 1.0 6.2569e-04 1.2 3.24e+04 3.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 190 KSPSetUp 7 1.0 1.2203e+00 1.0 1.38e+07 1.1 8.4e+02 3.3e+03 7.2e+01 6 6 5 3 11 6 6 5 3 11 84 KSPSolve 1 1.0 1.1512e+01 1.0 2.60e+08 1.3 1.5e+04 4.8e+03 5.5e+02 54 99 97 93 85 54 99 97 93 86 152 KSPGMRESOrthog 20 1.0 3.1514e-01 1.6 2.46e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 60 PCGAMGGraph_AGG 2 1.0 6.4207e-01 1.0 6.72e+05 1.1 4.2e+02 3.9e+02 3.8e+01 3 0 3 0 6 3 0 3 0 6 8 PCGAMGCoarse_AGG 2 1.0 6.4808e-01 1.0 0.00e+00 0.0 1.1e+03 5.6e+03 3.0e+01 3 0 7 8 5 3 0 7 8 5 0 PCGAMGProl_AGG 2 1.0 1.6743e+00 1.0 0.00e+00 0.0 2.7e+03 1.4e+03 1.9e+02 8 0 17 5 29 8 0 17 5 29 0 PCGAMGPOpt_AGG 2 1.0 1.4495e+00 1.0 2.35e+07 1.1 1.4e+03 5.2e+03 8.2e+01 7 10 9 9 13 7 10 9 9 13 121 GAMG: createProl 2 1.0 4.3937e+00 1.0 2.41e+07 1.1 5.6e+03 3.1e+03 3.4e+02 20 10 35 21 52 20 10 35 21 53 41 Graph 4 1.0 6.4189e-01 1.0 6.72e+05 1.1 4.2e+02 3.9e+02 3.8e+01 3 0 3 0 6 3 0 3 0 6 8 MIS/Agg 2 1.0 1.3576e-01 1.2 0.00e+00 0.0 6.5e+02 6.4e+02 9.0e+00 1 0 4 1 1 1 0 4 1 1 0 SA: col data 2 1.0 1.4058e+00 1.0 0.00e+00 0.0 2.5e+03 1.1e+03 1.7e+02 6 0 16 4 26 6 0 16 4 26 0 SA: frmProl0 2 1.0 2.4024e-01 1.1 0.00e+00 0.0 2.1e+02 4.2e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 SA: smooth 2 1.0 6.1120e-01 1.0 8.01e+06 1.2 5.1e+02 8.3e+03 2.8e+01 3 3 3 5 4 3 3 3 5 4 96 GAMG: partLevel 2 1.0 2.6659e+00 1.0 6.75e+07 1.2 9.8e+02 3.1e+04 8.1e+01 12 28 6 38 12 12 28 6 38 13 186 repartition 1 1.0 8.7145e-01 1.0 0.00e+00 0.0 9.4e+01 1.7e+04 5.5e+01 4 0 1 2 8 4 0 1 2 9 0 Invert-Sort 1 1.0 1.0787e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 2.9213e-01 1.1 0.00e+00 0.0 3.5e+01 4.4e+04 1.6e+01 1 0 0 2 2 1 0 0 2 2 0 Move P 1 1.0 2.5988e-01 1.0 0.00e+00 0.0 1.4e+01 4.2e+02 1.7e+01 1 0 0 0 3 1 0 0 0 3 0 PCSetUp 2 1.0 8.4720e+00 1.0 1.44e+08 1.5 7.4e+03 6.8e+03 5.0e+02 39 47 47 63 77 39 47 47 63 78 98 PCSetUpOnBlocks 17 1.0 1.2419e-01627.1 5.61e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 452 PCApply 39 1.0 2.5033e+00 1.1 1.57e+08 1.7 7.3e+03 2.8e+03 4.0e+00 11 48 47 26 1 11 48 47 26 1 341 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 24553732 0. Matrix Coarsen 2 2 1264 0. Matrix Null Space 1 1 704 0. Index Set 55 55 114052 0. IS L to G Mapping 6 6 88656 0. Vec Scatter 17 17 13872 0. Vector 185 185 4474496 0. Star Forest Graph 19 19 21888 0. Krylov Solver 9 9 72064 0. Preconditioner 9 9 9148 0. Viewer 3 2 1696 0. PetscRandom 4 4 2616 0. ======================================================================================================================== Average time to get PetscTime(): 9.18e-08 Average time for MPI_Barrier(): 6.072e-06 Average time for zero size MPI_Send(): 3.36575e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-x86_64-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak ==== elasticity strong scaling (8 processes with ndofs=80000) ==== UnitCube (29x26x32) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: strong Num processes: 8 Num cells 144768 Total degrees of freedom: 80190 Average degrees of freedom per process: 10023 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.39797 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 8 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 8 MPI processes type: bjacobi number of blocks = 8 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.29255 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=510, cols=510, bs=6 package used to perform factorization: petsc total: nonzeros=190548, allocated nonzeros=190548 using I-node routines: found 160 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=510, cols=510, bs=6 total: nonzeros=147420, allocated nonzeros=147420 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 170 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=510, cols=510, bs=6 total: nonzeros=147420, allocated nonzeros=147420 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 170 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.174955, max = 1.92451 eigenvalues estimate via cg min 0.0231004, max 1.74955 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=6408, cols=6408, bs=6 total: nonzeros=1212840, allocated nonzeros=1212840 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 220 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.261304, max = 2.87434 eigenvalues estimate via cg min 0.0493094, max 2.61304 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3365 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3365 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 6.276030 6.276030 Build dofmap data | 2 0.125517 0.251034 Build sparsity | 1 0.102410 0.102410 Compute SCOTCH graph re-ordering | 2 0.001636 0.003272 Compute dof reordering map | 2 0.014008 0.028015 Compute entities of dim = 1 | 1 0.547069 0.547069 Compute entities of dim = 2 | 1 0.451313 0.451313 Compute graph partition (SCOTCH) | 1 5.687564 5.687564 Compute local part of mesh dual graph | 1 0.067720 0.067720 Compute local-to-local map | 1 0.000624 0.000624 Compute non-local part of mesh dual graph | 1 0.134807 0.134807 Compute-local-to-global links for global/local adjacency list | 1 0.000354 0.000354 Distribute in graph creation AdjacencyList | 1 0.054055 0.054055 Extract partition boundaries from SCOTCH graph | 1 0.000821 0.000821 Fetch float data from remote processes | 1 0.046212 0.046212 Get SCOTCH graph data | 1 0.000012 0.000012 Init dofmap from element dofmap | 2 0.005236 0.010473 PETSc Krylov solver | 1 12.005509 12.005509 SCOTCH: call SCOTCH_dgraphBuild | 1 0.030587 0.030587 SCOTCH: call SCOTCH_dgraphHalo | 1 0.016357 0.016357 SCOTCH: call SCOTCH_dgraphPart | 1 5.638177 5.638177 SCOTCH: call SCOTCH_graphBuild | 2 0.000007 0.000015 SCOTCH: call SCOTCH_graphOrder | 2 0.001499 0.002998 SparsityPattern::assemble | 1 0.205737 0.205737 TOPOLOGY: Create sets | 1 0.052451 0.052451 ZZZ Assemble matrix | 1 0.552898 0.552898 ZZZ Assemble vector | 1 0.025938 0.025938 ZZZ Create Mesh | 1 6.276635 6.276635 ZZZ Create RHS function | 1 0.091064 0.091064 ZZZ Create boundary conditions | 1 0.057514 0.057514 ZZZ Create forms | 1 0.000092 0.000092 ZZZ Create mesh entity permutations | 1 1.019839 1.019839 ZZZ Create near-nullspace | 1 0.618157 0.618157 ZZZ FunctionSpace | 1 0.221715 0.221715 ZZZ Solve | 1 12.124633 12.124633 *** Number of Krylov iterations: 17 *** Solution norm: 6.02584e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 8 processors, by pbuilder2 Tue Dec 28 09:52:11 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 2.173e+01 1.001 2.172e+01 Objects: 3.780e+02 1.005 3.762e+02 Flop: 2.522e+08 1.175 2.291e+08 1.833e+09 Flop/sec: 1.162e+07 1.176 1.055e+07 8.440e+07 MPI Messages: 2.305e+03 1.516 1.842e+03 1.473e+04 MPI Message Lengths: 1.479e+07 1.788 5.589e+03 8.234e+07 MPI Reductions: 6.520e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.1718e+01 100.0% 1.8329e+09 100.0% 1.473e+04 100.0% 5.589e+03 100.0% 6.450e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 1.5070e+00 1.5 0.00e+00 0.0 8.1e+02 4.0e+00 9.5e+01 6 0 6 0 15 6 0 6 0 15 0 BuildTwoSidedF 76 1.0 1.1287e+00 1.9 0.00e+00 0.0 4.0e+02 5.9e+04 7.6e+01 4 0 3 29 12 4 0 3 29 12 0 MatMult 201 1.0 2.4391e+00 1.1 1.28e+08 1.1 7.6e+03 3.8e+03 0.0e+00 11 52 52 35 0 11 52 52 35 0 393 MatMultAdd 36 1.0 4.3743e-01 1.3 9.25e+06 1.1 7.7e+02 1.2e+03 0.0e+00 2 4 5 1 0 2 4 5 1 0 163 MatMultTranspose 36 1.0 4.0484e-01 1.4 9.26e+06 1.1 7.7e+02 1.2e+03 0.0e+00 1 4 5 1 0 1 4 5 1 0 176 MatSolve 18 0.0 1.2605e-02 0.0 6.85e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 543 MatLUFactorSym 1 1.0 1.3611e-02906.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 4.0637e-0217024.2 4.38e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 1077 MatScale 6 1.0 4.0884e-02 2.4 6.21e+05 1.1 7.6e+01 1.1e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 117 MatResidual 36 1.0 4.8859e-01 1.2 2.24e+07 1.2 1.4e+03 3.6e+03 0.0e+00 2 9 9 6 0 2 9 9 6 0 341 MatAssemblyBegin 41 1.0 8.0337e-01 2.5 0.00e+00 0.0 4.0e+02 5.9e+04 1.6e+01 2 0 3 29 2 2 0 3 29 2 0 MatAssemblyEnd 41 1.0 1.1821e+00 1.1 2.10e+05 3.4 9.2e+02 3.7e+02 7.0e+01 5 0 6 0 11 5 0 6 0 11 1 MatGetRowIJ 1 0.0 2.0209e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 5.1200e-01 1.1 0.00e+00 0.0 4.9e+01 3.3e+04 3.0e+01 2 0 0 2 5 2 0 0 2 5 0 MatGetOrdering 1 0.0 4.4735e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 3.3083e-01 1.1 0.00e+00 0.0 5.8e+02 8.1e+02 9.0e+00 1 0 4 1 1 1 0 4 1 1 0 MatZeroEntries 2 1.0 8.4092e-0333.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.0793e-01 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 4.0788e-02 1.5 6.85e+04 1.2 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 12 MatTranspose 4 1.0 1.7799e-02 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 5.1372e-01 1.1 0.00e+00 0.0 3.9e+02 6.7e+03 2.0e+01 2 0 3 3 3 2 0 3 3 3 0 MatMatMultNum 2 1.0 8.7574e-02 1.8 7.46e+06 1.3 7.6e+01 2.1e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 622 MatPtAPSymbolic 2 1.0 9.0225e-01 1.0 0.00e+00 0.0 4.6e+02 3.4e+04 1.4e+01 4 0 3 19 2 4 0 3 19 2 0 MatPtAPNumeric 2 1.0 1.0593e+00 1.0 7.18e+07 1.4 3.5e+02 4.0e+04 1.2e+01 5 28 2 17 2 5 28 2 17 2 477 MatTrnMatMultSym 1 1.0 3.1554e-01 1.1 0.00e+00 0.0 2.6e+02 2.0e+04 1.3e+01 1 0 2 6 2 1 0 2 6 2 0 MatGetLocalMat 7 1.0 1.4186e-02 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 1.8102e-01 1.2 0.00e+00 0.0 5.3e+02 3.1e+04 0.0e+00 1 0 4 20 0 1 0 4 20 0 0 VecDot 36 1.0 4.2751e-01 1.1 7.49e+05 1.1 0.0e+00 0.0e+00 3.6e+01 2 0 0 0 6 2 0 0 0 6 14 VecMDot 20 1.0 3.1102e-01 1.6 1.26e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 31 VecTDot 76 1.0 9.9534e-01 1.2 1.19e+06 1.1 0.0e+00 0.0e+00 7.6e+01 4 0 0 0 12 4 0 0 0 12 9 VecNorm 69 1.0 9.3285e-01 1.4 1.02e+06 1.1 0.0e+00 0.0e+00 6.9e+01 4 0 0 0 11 4 0 0 0 11 8 VecScale 28 1.0 7.7597e-04 1.6 1.88e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1848 VecCopy 122 1.0 1.7337e-03 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 188 1.0 8.5292e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 85 1.0 4.6150e-03 1.4 1.37e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2282 VecAYPX 250 1.0 7.3182e-03 1.4 2.18e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2268 VecAXPBYCZ 72 1.0 2.6451e-03 1.4 2.05e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5893 VecMAXPY 22 1.0 2.7052e-03 1.7 1.48e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4161 VecAssemblyBegin 61 1.0 4.3532e-01 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 2 0 0 0 9 2 0 0 0 9 0 VecAssemblyEnd 61 1.0 3.2061e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 188 1.0 6.8063e-03 1.6 1.07e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1196 VecScatterBegin 340 1.0 1.9561e-02 1.5 0.00e+00 0.0 1.2e+04 2.9e+03 0.0e+00 0 0 80 42 0 0 0 80 42 0 0 VecScatterEnd 340 1.0 3.3309e+00 1.1 3.40e+04 3.6 0.0e+00 0.0e+00 0.0e+00 15 0 0 0 0 15 0 0 0 0 0 VecSetRandom 2 1.0 7.4745e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 3.9524e-01 1.4 5.64e+05 1.1 0.0e+00 0.0e+00 2.8e+01 2 0 0 0 4 2 0 0 0 4 11 SFSetGraph 19 1.0 6.5781e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 5.8103e-01 1.2 0.00e+00 0.0 1.2e+03 3.6e+02 1.9e+01 2 0 8 1 3 2 0 8 1 3 0 SFBcastOpBegin 314 1.0 1.7925e-02 1.7 0.00e+00 0.0 1.1e+04 3.0e+03 0.0e+00 0 0 77 41 0 0 0 77 41 0 0 SFBcastOpEnd 314 1.0 3.1947e+00 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 14 0 0 0 0 14 0 0 0 0 0 SFReduceBegin 37 1.0 9.7633e-04 1.3 0.00e+00 0.0 8.1e+02 1.3e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 37 1.0 3.7758e-01 1.4 3.40e+04 3.6 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 SFPack 351 1.0 4.8360e-03 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 351 1.0 6.7975e-04 1.5 3.40e+04 3.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 188 KSPSetUp 7 1.0 9.3227e-01 1.0 1.38e+07 1.2 7.6e+02 3.6e+03 7.2e+01 4 6 5 3 11 4 6 5 3 11 111 KSPSolve 1 1.0 1.1860e+01 1.0 2.49e+08 1.2 1.4e+04 5.4e+03 5.5e+02 55 99 97 93 85 55 99 97 93 86 152 KSPGMRESOrthog 20 1.0 3.1307e-01 1.6 2.51e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 61 PCGAMGGraph_AGG 2 1.0 8.0830e-01 1.0 6.75e+05 1.2 3.8e+02 4.2e+02 3.8e+01 4 0 3 0 6 4 0 3 0 6 6 PCGAMGCoarse_AGG 2 1.0 7.8355e-01 1.0 0.00e+00 0.0 1.0e+03 6.1e+03 3.0e+01 4 0 7 8 5 4 0 7 8 5 0 PCGAMGProl_AGG 2 1.0 1.7868e+00 1.0 0.00e+00 0.0 2.4e+03 1.5e+03 1.9e+02 8 0 16 4 29 8 0 16 4 29 0 PCGAMGPOpt_AGG 2 1.0 1.4002e+00 1.0 2.36e+07 1.2 1.2e+03 5.7e+03 8.2e+01 6 10 8 8 13 6 10 8 8 13 125 GAMG: createProl 2 1.0 4.7403e+00 1.0 2.43e+07 1.2 5.0e+03 3.4e+03 3.4e+02 22 10 34 21 52 22 10 34 21 52 38 Graph 4 1.0 8.0805e-01 1.0 6.75e+05 1.2 3.8e+02 4.2e+02 3.8e+01 4 0 3 0 6 4 0 3 0 6 6 MIS/Agg 2 1.0 3.3091e-01 1.1 0.00e+00 0.0 5.8e+02 8.1e+02 9.0e+00 1 0 4 1 1 1 0 4 1 1 0 SA: col data 2 1.0 1.5529e+00 1.0 0.00e+00 0.0 2.2e+03 1.3e+03 1.7e+02 7 0 15 3 26 7 0 15 3 26 0 SA: frmProl0 2 1.0 1.2932e-01 1.3 0.00e+00 0.0 2.1e+02 4.3e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 SA: smooth 2 1.0 5.7865e-01 1.0 8.04e+06 1.2 4.6e+02 9.2e+03 2.8e+01 3 3 3 5 4 3 3 3 5 4 102 GAMG: partLevel 2 1.0 2.7985e+00 1.0 7.18e+07 1.4 9.1e+02 3.5e+04 8.1e+01 13 28 6 38 12 13 28 6 38 13 180 repartition 1 1.0 8.5853e-01 1.0 0.00e+00 0.0 9.4e+01 1.8e+04 5.5e+01 4 0 1 2 8 4 0 1 2 9 0 Invert-Sort 1 1.0 9.7112e-02 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 2.7228e-01 1.0 0.00e+00 0.0 3.5e+01 4.6e+04 1.6e+01 1 0 0 2 2 1 0 0 2 2 0 Move P 1 1.0 2.7190e-01 1.0 0.00e+00 0.0 1.4e+01 4.4e+02 1.7e+01 1 0 0 0 3 1 0 0 0 3 0 PCSetUp 2 1.0 8.5825e+00 1.0 1.29e+08 1.4 6.7e+03 7.7e+03 5.0e+02 39 45 46 62 77 39 45 46 62 78 97 PCSetUpOnBlocks 18 1.0 5.4876e-02294.1 4.38e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 797 PCApply 40 1.0 2.5316e+00 1.0 1.48e+08 1.5 7.0e+03 3.1e+03 4.0e+00 11 48 48 26 1 11 48 48 26 1 351 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 24003724 0. Matrix Coarsen 2 2 1264 0. Matrix Null Space 1 1 704 0. Index Set 55 55 107708 0. IS L to G Mapping 6 6 85180 0. Vec Scatter 17 17 13872 0. Vector 185 185 4421592 0. Star Forest Graph 19 19 21888 0. Krylov Solver 9 9 72064 0. Preconditioner 9 9 9148 0. Viewer 3 2 1696 0. PetscRandom 4 4 2616 0. ======================================================================================================================== Average time to get PetscTime(): 6.87e-08 Average time for MPI_Barrier(): 0.0304091 Average time for zero size MPI_Send(): 0.00855049 #PETSc Option Table entries: --ndofs 80000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-x86_64-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 80000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 80000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong ==== poisson weak scaling (8 processes with ndofs=10000) ==== UnitCube (42x42x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: weak Num processes: 8 Num cells 444528 Total degrees of freedom: 79507 Average degrees of freedom per process: 9938 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=79507, cols=79507 total: nonzeros=1148743, allocated nonzeros=1148743 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 21.744323 21.744323 Build dofmap data | 2 0.334071 0.668142 Build sparsity | 1 0.198930 0.198930 Compute SCOTCH graph re-ordering | 2 0.006426 0.012852 Compute connectivity 2-3 | 1 0.003328 0.003328 Compute dof reordering map | 2 0.048155 0.096309 Compute entities of dim = 1 | 1 1.101087 1.101087 Compute entities of dim = 2 | 1 0.954143 0.954143 Compute graph partition (SCOTCH) | 1 19.818296 19.818296 Compute local part of mesh dual graph | 1 0.273153 0.273153 Compute local-to-local map | 1 0.001997 0.001997 Compute non-local part of mesh dual graph | 1 0.261180 0.261180 Compute-local-to-global links for global/local adjacency list | 1 0.001055 0.001055 Distribute in graph creation AdjacencyList | 1 0.072808 0.072808 Extract partition boundaries from SCOTCH graph | 1 0.002241 0.002241 Fetch float data from remote processes | 1 0.051660 0.051660 Get SCOTCH graph data | 1 0.000014 0.000014 Init dofmap from element dofmap | 2 0.024847 0.049695 PETSc Krylov solver | 1 16.640760 16.640760 SCOTCH: call SCOTCH_dgraphBuild | 1 0.050262 0.050262 SCOTCH: call SCOTCH_dgraphHalo | 1 0.027663 0.027663 SCOTCH: call SCOTCH_dgraphPart | 1 19.727503 19.727503 SCOTCH: call SCOTCH_graphBuild | 2 0.000016 0.000033 SCOTCH: call SCOTCH_graphOrder | 2 0.006090 0.012179 SparsityPattern::assemble | 1 0.295496 0.295496 TOPOLOGY: Create sets | 1 0.100768 0.100768 ZZZ Assemble | 1 1.756605 1.756605 ZZZ Assemble matrix | 1 0.302572 0.302572 ZZZ Assemble vector | 1 0.041326 0.041326 ZZZ Create Mesh | 1 21.744940 21.744940 ZZZ Create mesh entity permutations | 1 2.110316 2.110316 ZZZ FunctionSpace | 1 0.309499 0.309499 ZZZ Solve | 1 16.706219 16.706219 *** Number of Krylov iterations: 7 *** Solution norm: 48440.5 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 8 processors, by pbuilder2 Tue Dec 28 09:53:15 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 4.278e+01 1.001 4.277e+01 Objects: 3.800e+01 1.000 3.800e+01 Flop: 3.599e+06 1.039 3.515e+06 2.812e+07 Flop/sec: 8.415e+04 1.040 8.217e+04 6.574e+05 MPI Messages: 1.260e+02 2.333 8.550e+01 6.840e+02 MPI Message Lengths: 5.811e+05 1.463 5.448e+03 3.727e+06 MPI Reductions: 6.600e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 4.2770e+01 100.0% 2.8116e+07 100.0% 6.840e+02 100.0% 5.448e+03 100.0% 5.900e+01 89.4% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 1.2290e-01 2.5 0.00e+00 0.0 1.5e+02 4.0e+00 4.0e+00 0 0 22 0 6 0 0 22 0 7 0 BuildTwoSidedF 1 1.0 7.8188e-0227.6 0.00e+00 0.0 7.6e+01 1.4e+04 1.0e+00 0 0 11 29 2 0 0 11 29 2 0 MatMult 7 1.0 1.0046e-01 1.5 1.99e+06 1.0 2.7e+02 3.7e+03 0.0e+00 0 55 39 26 0 0 55 39 26 0 155 MatConvert 1 1.0 1.3803e-01 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 6 0 0 0 0 7 0 MatAssemblyBegin 2 1.0 8.2573e-0212.1 0.00e+00 0.0 7.6e+01 1.4e+04 1.0e+00 0 0 11 29 2 0 0 11 29 2 0 MatAssemblyEnd 2 1.0 2.1982e-01 1.2 7.64e+03 1.8 7.6e+01 9.2e+02 9.0e+00 0 0 11 2 14 0 0 11 2 15 0 MatGetRowIJ 2 1.0 6.3580e-06 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 6.2750e-04 2.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 1.9103e-0284.7 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 2 0 0 0 0 2 0 VecTDot 14 1.0 2.1919e-01 1.5 2.85e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 24 10 VecNorm 9 1.0 1.3489e-01 1.8 1.83e+05 1.0 0.0e+00 0.0e+00 9.0e+00 0 5 0 0 14 0 5 0 0 15 11 VecCopy 2 1.0 1.3263e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 11 1.0 1.5470e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 9.2006e-04 1.4 2.85e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2420 VecAYPX 6 1.0 4.2568e-04 1.5 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 2241 VecScatterBegin 10 1.0 8.5853e-04 1.6 0.00e+00 0.0 3.8e+02 3.0e+03 0.0e+00 0 0 56 31 0 0 0 56 31 0 0 VecScatterEnd 10 1.0 1.5382e-01 1.5 1.13e+03 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 1.5407e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.1430e-01 1.9 0.00e+00 0.0 2.3e+02 5.4e+02 3.0e+00 0 0 33 3 5 0 0 33 3 5 0 SFBcastOpBegin 9 1.0 7.5892e-04 1.7 0.00e+00 0.0 3.4e+02 3.2e+03 0.0e+00 0 0 50 29 0 0 0 50 29 0 0 SFBcastOpEnd 9 1.0 1.2769e-01 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 3.4055e-05 1.5 0.00e+00 0.0 3.8e+01 1.4e+03 0.0e+00 0 0 6 1 0 0 0 6 1 0 0 SFReduceEnd 1 1.0 3.1845e-02 3.6 1.13e+03 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 10 1.0 1.7861e-04 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 10 1.0 5.0821e-05 1.6 1.13e+03 1.8 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 127 KSPSetUp 1 1.0 1.2417e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.6632e+01 1.0 2.84e+06 1.0 2.7e+02 3.7e+03 2.6e+01 39 79 39 26 39 39 79 39 26 44 1 PCSetUp 1 1.0 9.4877e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 22 0 0 0 6 22 0 0 0 7 0 PCApply 8 1.0 6.8084e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 16 0 0 0 0 16 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2108372 0. Index Set 6 6 17652 0. IS L to G Mapping 4 4 174896 0. Vec Scatter 3 3 2448 0. Vector 14 14 372632 0. Star Forest Graph 3 3 3456 0. Krylov Solver 1 1 1488 0. Preconditioner 1 1 1456 0. Viewer 2 1 848 0. ======================================================================================================================== Average time to get PetscTime(): 6.78e-08 Average time for MPI_Barrier(): 0.0135426 Average time for zero size MPI_Send(): 0.00333071 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-x86_64-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak ==== poisson strong scaling (8 processes with ndofs=80000) ==== UnitCube (42x42x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: strong Num processes: 8 Num cells 444528 Total degrees of freedom: 79507 Average degrees of freedom per process: 9938 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=79507, cols=79507 total: nonzeros=1148743, allocated nonzeros=1148743 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 11.375543 11.375543 Build dofmap data | 2 0.316881 0.633762 Build sparsity | 1 0.103855 0.103855 Compute SCOTCH graph re-ordering | 2 0.006035 0.012070 Compute connectivity 2-3 | 1 0.004500 0.004500 Compute dof reordering map | 2 0.045137 0.090275 Compute entities of dim = 1 | 1 1.100413 1.100413 Compute entities of dim = 2 | 1 1.082604 1.082604 Compute graph partition (SCOTCH) | 1 9.924012 9.924012 Compute local part of mesh dual graph | 1 0.204704 0.204704 Compute local-to-local map | 1 0.001964 0.001964 Compute non-local part of mesh dual graph | 1 0.143372 0.143372 Compute-local-to-global links for global/local adjacency list | 1 0.000964 0.000964 Distribute in graph creation AdjacencyList | 1 0.065036 0.065036 Extract partition boundaries from SCOTCH graph | 1 0.002191 0.002191 Fetch float data from remote processes | 1 0.062567 0.062567 Get SCOTCH graph data | 1 0.000015 0.000015 Init dofmap from element dofmap | 2 0.022436 0.044873 PETSc Krylov solver | 1 16.454893 16.454893 SCOTCH: call SCOTCH_dgraphBuild | 1 0.030053 0.030053 SCOTCH: call SCOTCH_dgraphHalo | 1 0.014772 0.014772 SCOTCH: call SCOTCH_dgraphPart | 1 9.868864 9.868864 SCOTCH: call SCOTCH_graphBuild | 2 0.000017 0.000033 SCOTCH: call SCOTCH_graphOrder | 2 0.005167 0.010335 SparsityPattern::assemble | 1 0.316853 0.316853 TOPOLOGY: Create sets | 1 0.077470 0.077470 ZZZ Assemble | 1 1.783470 1.783470 ZZZ Assemble matrix | 1 0.291032 0.291032 ZZZ Assemble vector | 1 0.060195 0.060195 ZZZ Create Mesh | 1 11.376182 11.376182 ZZZ Create mesh entity permutations | 1 2.249605 2.249605 ZZZ FunctionSpace | 1 0.323105 0.323105 ZZZ Solve | 1 16.543719 16.543719 *** Number of Krylov iterations: 8 *** Solution norm: 46843.7 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 8 processors, by pbuilder2 Tue Dec 28 09:54:03 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 3.247e+01 1.001 3.244e+01 Objects: 3.800e+01 1.000 3.800e+01 Flop: 3.992e+06 1.056 3.911e+06 3.129e+07 Flop/sec: 1.230e+05 1.055 1.206e+05 9.645e+05 MPI Messages: 1.140e+02 2.000 8.550e+01 6.840e+02 MPI Message Lengths: 6.188e+05 1.513 5.629e+03 3.850e+06 MPI Reductions: 6.900e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 3.2442e+01 100.0% 3.1290e+07 100.0% 6.840e+02 100.0% 5.629e+03 100.0% 6.200e+01 89.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 1.4900e-01 1.8 0.00e+00 0.0 1.4e+02 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 6 0 BuildTwoSidedF 1 1.0 9.0233e-02 4.5 0.00e+00 0.0 7.2e+01 1.5e+04 1.0e+00 0 0 11 28 1 0 0 11 28 2 0 MatMult 8 1.0 1.1987e-01 1.7 2.26e+06 1.1 2.9e+02 3.9e+03 0.0e+00 0 57 42 29 0 0 57 42 29 0 148 MatConvert 1 1.0 1.8386e-01 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 1 0 0 0 6 1 0 0 0 6 0 MatAssemblyBegin 2 1.0 9.3995e-02 3.2 0.00e+00 0.0 7.2e+01 1.5e+04 1.0e+00 0 0 11 28 1 0 0 11 28 2 0 MatAssemblyEnd 2 1.0 2.0200e-01 1.2 7.81e+03 2.0 7.2e+01 9.7e+02 9.0e+00 1 0 11 2 13 1 0 11 2 15 0 MatGetRowIJ 2 1.0 3.5150e-06 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 5.5123e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 1.6454e-02509.4 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 16 1.0 2.1845e-01 1.3 3.25e+05 1.1 0.0e+00 0.0e+00 1.6e+01 1 8 0 0 23 1 8 0 0 26 12 VecNorm 10 1.0 1.5475e-01 2.4 2.03e+05 1.1 0.0e+00 0.0e+00 1.0e+01 0 5 0 0 14 0 5 0 0 16 10 VecCopy 2 1.0 1.8882e-04 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 12 1.0 2.5288e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 16 1.0 1.1466e-03 1.5 3.25e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 2219 VecAYPX 7 1.0 5.0653e-04 1.6 1.42e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 2198 VecScatterBegin 11 1.0 8.2324e-04 1.4 0.00e+00 0.0 4.0e+02 3.2e+03 0.0e+00 0 0 58 33 0 0 0 58 33 0 0 VecScatterEnd 11 1.0 1.7770e-01 2.3 1.16e+03 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 1.6102e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.2353e-01 1.6 0.00e+00 0.0 2.2e+02 5.6e+02 3.0e+00 0 0 32 3 4 0 0 32 3 5 0 SFBcastOpBegin 10 1.0 7.2950e-04 1.5 0.00e+00 0.0 3.6e+02 3.4e+03 0.0e+00 0 0 53 32 0 0 0 53 32 0 0 SFBcastOpEnd 10 1.0 1.3981e-01 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 5.1993e-05 2.5 0.00e+00 0.0 3.6e+01 1.4e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 1 1.0 4.1864e-02 3.9 1.16e+03 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 11 1.0 1.4948e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 11 1.0 3.8159e-05 1.3 1.16e+03 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 168 KSPSetUp 1 1.0 1.5180e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.6444e+01 1.0 3.24e+06 1.1 2.9e+02 3.9e+03 2.9e+01 51 81 42 29 42 51 81 42 29 47 2 PCSetUp 1 1.0 9.0605e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 28 0 0 0 6 28 0 0 0 6 0 PCApply 9 1.0 7.0372e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 22 0 0 0 0 22 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2148684 0. Index Set 6 6 17704 0. IS L to G Mapping 4 4 178704 0. Vec Scatter 3 3 2448 0. Vector 14 14 380240 0. Star Forest Graph 3 3 3456 0. Krylov Solver 1 1 1488 0. Preconditioner 1 1 1456 0. Viewer 2 1 848 0. ======================================================================================================================== Average time to get PetscTime(): 7.84e-08 Average time for MPI_Barrier(): 4.3928e-06 Average time for zero size MPI_Send(): 8.21738e-06 #PETSc Option Table entries: --ndofs 80000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-x86_64-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 80000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 80000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/fenicsx-performance-tests-0.0\~git20210119.80e82ac/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test -- Set runtime path of "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test" to "" make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.0~git20210119.80e82ac-1_all.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.0~git20210119.80e82ac-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2357468/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2357468/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2357468 and its subdirectories I: Current time: Tue Dec 28 09:54:46 +14 2021 I: pbuilder-time-stamp: 1640634886