I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 25 00:04:56 +14 2021 I: pbuilder-time-stamp: 1627121096 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [isospec_2.1.3-1.dsc] I: copying [./isospec_2.1.3.orig.tar.gz] I: copying [./isospec_2.1.3-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig._815fQ0v/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 7 06:59:41 2021 +14 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./isospec_2.1.3-1.dsc dpkg-source: info: extracting isospec in isospec-2.1.3 dpkg-source: info: unpacking isospec_2.1.3.orig.tar.gz dpkg-source: info: unpacking isospec_2.1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Ensure-the-header-files-are-found-in-the-system.patch dpkg-source: info: applying 0002-Remove-the-mtune-native-march-native.patch dpkg-source: info: applying 0003-cmake-directive-avoid-rpath.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18589/tmp/hooks/D01_modify_environment starting debug: Running on ionos12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/18589/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/18589/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=7' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=b920b961233241aaa25a840a857cd2f8 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=18589 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.jSlkBVuCL6/pbuilderrc_yWbE --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.jSlkBVuCL6/b2 --logfile b2/build.log --extrapackages usrmerge isospec_2.1.3-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-17-686-pae #1 SMP Debian 4.19.194-3 (2021-07-18) i686 GNU/Linux I: ls -l /bin total 5792 -rwxr-xr-x 1 root root 1367848 Jun 22 16:25 bash -rwxr-xr-x 3 root root 38280 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 23 2020 cat -rwxr-xr-x 1 root root 71624 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 23 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 23 2020 chown -rwxr-xr-x 1 root root 157960 Sep 23 2020 cp -rwxr-xr-x 1 root root 128724 Dec 11 2020 dash -rwxr-xr-x 1 root root 124904 Sep 23 2020 date -rwxr-xr-x 1 root root 92172 Sep 23 2020 dd -rwxr-xr-x 1 root root 100752 Sep 23 2020 df -rwxr-xr-x 1 root root 153964 Sep 23 2020 dir -rwxr-xr-x 1 root root 83644 Feb 8 04:38 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 8 04:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 21916 Nov 8 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 23 2020 ln -rwxr-xr-x 1 root root 55572 Feb 8 2020 login -rwxr-xr-x 1 root root 153964 Sep 23 2020 ls -rwxr-xr-x 1 root root 153124 Feb 8 04:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 23 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 8 04:38 more -rwsr-xr-x 1 root root 50720 Feb 8 04:38 mount -rwxr-xr-x 1 root root 13856 Feb 8 04:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Jun 22 16:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 23 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 23 2020 rm -rwxr-xr-x 1 root root 46984 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 25 00:09 sh -> bash lrwxrwxrwx 1 root root 4 Jul 24 23:25 sh.distrib -> dash -rwxr-xr-x 1 root root 34696 Sep 23 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 23 2020 stty -rwsr-xr-x 1 root root 79396 Feb 8 04:38 su -rwxr-xr-x 1 root root 34696 Sep 23 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 23:55 tar -rwxr-xr-x 1 root root 13860 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 23 2020 touch -rwxr-xr-x 1 root root 34664 Sep 23 2020 true -rwxr-xr-x 1 root root 17768 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 8 04:38 umount -rwxr-xr-x 1 root root 34664 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 8 04:38 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/18589/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec (>= 0.3), dpkg-dev (>= 1.18.25), graphicsmagick-imagemagick-compat, cmake (>= 3.12), d-shlibs (>= 0.48~), dh-python, python3-dev, python3-setuptools, python3-cffi, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec (>= 0.3); however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on graphicsmagick-imagemagick-compat; however: Package graphicsmagick-imagemagick-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.12); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.48~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-cffi; however: Package python3-cffi is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} fonts-mathjax{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} graphicsmagick{a} graphicsmagick-imagemagick-compat{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libclang-cpp11{a} libclang1-11{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl4{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libglib2.0-0{a} libgraphicsmagick-q16-3{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libharfbuzz0b{a} libice6{a} libicu67{a} libidn11{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp24{a} libkpathsea6{a} liblcms2-2{a} libldap-2.4-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libprocps8{a} libpsl5{a} libptexenc1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libtiff5{a} libtool{a} libuchardet0{a} libuv1{a} libwebp6{a} libwebpmux3{a} libwmf0.2-7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus dvisvgm fonts-droid-fallback gsfonts javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lmodern lynx ps2eps psmisc publicsuffix ruby shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 173 newly installed, 0 to remove and 0 not upgraded. Need to get 238 MB of archives. After unpacking 834 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 poppler-data all 0.4.10-1 [1602 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 tex-common all 6.16 [53.7 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.3+b1 [372 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-2 [139 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 d-shlibs all 0.98 [17.9 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 dh-exec i386 0.23.2 [27.0 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libz3-4 i386 4.8.10-1 [7737 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libllvm11 i386 1:11.0.1-2 [17.7 MB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libclang-cpp11 i386 1:11.0.1-2 [9562 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libclang1-11 i386 1:11.0.1-2 [5429 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 doxygen i386 1.9.1-1 [4426 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 fonts-urw-base35 all 20200910-1 [6367 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 fonts-lmodern all 2.004.5-6.1 [4540 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libgs9-common all 9.53.3~dfsg-7 [734 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libavahi-common-data i386 0.8-5 [123 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libavahi-common3 i386 0.8-5 [60.1 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libdbus-1-3 i386 1.12.20-2 [232 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libavahi-client3 i386 0.8-5 [64.3 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libcups2 i386 2.3.3op2-3+deb11u1 [366 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libidn11 i386 1.33-3 [117 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libijs-0.35 i386 0.35-15 [16.9 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libjbig2dec0 i386 0.19-2 [69.9 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 liblcms2-2 i386 2.12~rc1-2 [161 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libopenjp2-7 i386 2.4.0-3 [179 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libpaper1 i386 1.1.28+b1 [21.7 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1 [269 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libtiff5 i386 4.2.0-1 [305 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libgs9 i386 9.53.3~dfsg-7 [2363 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 ghostscript i386 9.53.3~dfsg-7 [97.9 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libwebpmux3 i386 0.6.1-2.1 [99.0 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.1-1 [310 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.1-1 [796 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libwmf0.2-7 i386 0.2.8.4-17 [174 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libgraphicsmagick-q16-3 i386 1.4+really1.3.36+hg16481-1 [1227 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 graphicsmagick i386 1.4+really1.3.36+hg16481-1 [1010 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 graphicsmagick-imagemagick-compat all 1.4+really1.3.36+hg16481-1 [32.7 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libapache-pom-java all 18-1 [4676 B] Get: 117 http://deb.debian.org/debian bullseye/main i386 libpixman-1-0 i386 0.40.0-1 [545 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 libxcb-render0 i386 1.14-3 [112 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libxcb-shm0 i386 1.14-3 [102 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 libcairo2 i386 1.16.0-5 [746 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 libcommons-parent-java all 43-1 [10.8 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 libcommons-logging-java all 1.2-2 [62.2 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2 [147 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 126 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 x11-common all 1:7.7+22 [252 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 135 http://deb.debian.org/debian bullseye/main i386 libkpathsea6 i386 2020.20200327.54578-7 [176 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 libpaper-utils i386 1.1.28+b1 [18.6 kB] Get: 137 http://deb.debian.org/debian bullseye/main i386 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 libptexenc1 i386 2020.20200327.54578-7 [65.1 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 141 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 143 http://deb.debian.org/debian bullseye/main i386 libsynctex2 i386 2020.20200327.54578-7 [85.9 kB] Get: 144 http://deb.debian.org/debian bullseye/main i386 libteckit0 i386 2.5.10+ds1-3 [277 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 libtexlua53 i386 2020.20200327.54578-7 [146 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 libtexluajit2 i386 2020.20200327.54578-7 [284 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 libxt6 i386 1:1.2.0-1 [195 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB] Get: 149 http://deb.debian.org/debian bullseye/main i386 libxpm4 i386 1:3.5.12-1 [50.9 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 libxaw7 i386 2:1.0.13-1.1 [210 kB] Get: 151 http://deb.debian.org/debian bullseye/main i386 libxi6 i386 2:1.7.10-1 [85.1 kB] Get: 152 http://deb.debian.org/debian bullseye/main i386 libzzip-0-13 i386 0.13.62-3.3 [57.6 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 preview-latex-style all 12.2-1 [201 kB] Get: 154 http://deb.debian.org/debian bullseye/main i386 python3-cffi-backend i386 1.14.5-1 [89.1 kB] Get: 155 http://deb.debian.org/debian bullseye/main i386 python3-ply all 3.11-4 [65.5 kB] Get: 156 http://deb.debian.org/debian bullseye/main i386 python3-pycparser all 2.20-3 [74.5 kB] Get: 157 http://deb.debian.org/debian bullseye/main i386 python3-cffi all 1.14.5-1 [87.9 kB] Get: 158 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 159 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 162 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-4 [366 kB] Get: 163 http://deb.debian.org/debian bullseye/main i386 t1utils i386 1.41-4 [62.3 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 texlive-binaries i386 2020.20200327.54578-7 [10.2 MB] Get: 165 http://deb.debian.org/debian bullseye/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 166 http://deb.debian.org/debian bullseye/main i386 texlive-base all 2020.20210202-3 [20.8 MB] Get: 167 http://deb.debian.org/debian bullseye/main i386 texlive-font-utils all 2020.20210202-3 [4672 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 texlive-fonts-recommended all 2020.20210202-3 [5002 kB] Get: 169 http://deb.debian.org/debian bullseye/main i386 texlive-latex-base all 2020.20210202-3 [1120 kB] Get: 170 http://deb.debian.org/debian bullseye/main i386 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 171 http://deb.debian.org/debian bullseye/main i386 texlive-pictures all 2020.20210202-3 [6743 kB] Get: 172 http://deb.debian.org/debian bullseye/main i386 texlive-latex-extra all 2020.20210202-3 [13.7 MB] Get: 173 http://deb.debian.org/debian bullseye/main i386 texlive-plain-generic all 2020.20210202-3 [27.0 MB] Fetched 238 MB in 55s (4289 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../3-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../5-poppler-data_0.4.10-1_all.deb ... Unpacking poppler-data (0.4.10-1) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../6-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../7-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../8-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21076 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:i386. Preparing to unpack .../2-libmpdec3_2.5.1-1_i386.deb ... Unpacking libmpdec3:i386 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../4-libreadline8_8.1-1_i386.deb ... Unpacking libreadline8:i386 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:i386. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_i386.deb ... Unpacking libpython3.9-stdlib:i386 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_i386.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_i386.deb ... Unpacking libpython3-stdlib:i386 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21497 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. 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Preparing to unpack .../155-texlive-plain-generic_2020.20210202-3_all.deb ... Unpacking texlive-plain-generic (2020.20210202-3) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up libgraphite2-3:i386 (1.3.14-1) ... Setting up liblcms2-2:i386 (2.12~rc1-2) ... Setting up libpixman-1-0:i386 (0.40.0-1) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libpsl5:i386 (0.21.0-1.2) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libicu67:i386 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libtexlua53:i386 (2020.20200327.54578-7) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.66.8-1) ... No schema files found: doing nothing. Setting up libijs-0.35:i386 (0.35-15) ... Setting up libtexluajit2:i386 (2020.20200327.54578-7) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:i386 (1.43.0-1) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up libdeflate0:i386 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up libzzip-0-13:i386 (0.13.62-3.3) ... Setting up file (1:5.39-3) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up poppler-data (0.4.10-1) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:i386 (4.8.10-1) ... Setting up libuv1:i386 (1.40.0-2) ... Setting up libexpat1-dev:i386 (2.2.10-2) ... Setting up libjpeg62-turbo:i386 (1:2.0.6-4) ... 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Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up fonts-lmodern (2.004.5-6.1) ... Setting up libopenjp2-7:i386 (2.4.0-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:i386 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libtiff5:i386 (4.2.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libwebpmux3:i386 (0.6.1-2.1) ... Setting up libbsd0:i386 (0.11.3-1) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libprocps8:i386 (2:3.3.17-5) ... Setting up libsynctex2:i386 (2020.20200327.54578-7) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libgs9-common (9.53.3~dfsg-7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libice6:i386 (2:1.0.10-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:i386 (3.4.3-2+b1) ... Setting up libxcb-render0:i386 (1.14-3) ... Setting up libedit2:i386 (3.1-20191231-2+b1) ... Setting up libreadline8:i386 (8.1-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:i386 (0.8-5) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libxcb-shm0:i386 (1.14-3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libllvm11:i386 (1:11.0.1-2) ... Setting up libptexenc1:i386 (2020.20200327.54578-7) ... Setting up libfreetype6:i386 (2.10.4+dfsg-1) ... Setting up libclang1-11 (1:11.0.1-2) ... Setting up ucf (3.0043) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:i386 (7.74.0-1.3+b1) ... Setting up libx11-6:i386 (2:1.7.1-1) ... Setting up libharfbuzz0b:i386 (2.7.4-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libavahi-client3:i386 (0.8-5) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:i386 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxpm4:i386 (1:3.5.12-1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libwmf0.2-7:i386 (0.2.8.4-17) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp11 (1:11.0.1-2) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up doxygen (1.9.1-1) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up libgraphicsmagick-q16-3 (1.4+really1.3.36+hg16481-1) ... Setting up libxt6:i386 (1:1.2.0-1) ... Setting up libcups2:i386 (2.3.3op2-3+deb11u1) ... Setting up cmake (3.18.4-2) ... Setting up libfontconfig1:i386 (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up libxmu6:i386 (2:1.1.2-2+b3) ... Setting up libgs9:i386 (9.53.3~dfsg-7) ... Setting up libxi6:i386 (2:1.7.10-1) ... Setting up graphicsmagick (1.4+really1.3.36+hg16481-1) ... Setting up graphicsmagick-imagemagick-compat (1.4+really1.3.36+hg16481-1) ... Setting up preview-latex-style (12.2-1) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up dh-exec (0.23.2) ... Setting up libxaw7:i386 (2:1.0.13-1.1) ... Setting up ghostscript (9.53.3~dfsg-7) ... Setting up libcairo2:i386 (1.16.0-5) ... Setting up python3.9-dev (3.9.2-1) ... Setting up texlive-binaries (2020.20200327.54578-7) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up python3-lib2to3 (3.9.2-1) ... Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-cffi-backend:i386 (1.14.5-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-ply (3.11-4) ... Setting up texlive-plain-generic (2020.20210202-3) ... Setting up texlive-font-utils (2020.20210202-3) ... Setting up python3-pycparser (2.20-3) ... Setting up texlive-latex-base (2020.20210202-3) ... Setting up python3-dev (3.9.2-3) ... Setting up texlive-latex-recommended (2020.20210202-3) ... Setting up texlive-pictures (2020.20210202-3) ... Setting up texlive-fonts-recommended (2020.20210202-3) ... Setting up python3-cffi (1.14.5-1) ... Setting up texlive-latex-extra (2020.20210202-3) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main i386 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main i386 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main i386 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (1418 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61206 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package I: Running cd /build/isospec-2.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package isospec dpkg-buildpackage: info: source version 2.1.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh clean --with python3 debian/rules override_dh_clean make[1]: Verzeichnis „/build/isospec-2.1.3“ wird betreten dpkg-query: Kein Paket gefunden, das auf r-base-dev passt dpkg-query: Kein Paket gefunden, das auf r-base-core passt rm -rf obj-x86_64-linux-gnu # The setup.py script immediately creates that link which # makes the package building to stop because it finds that # the source tree has changed. So, first remove that link, # that we'll recreate when we need it later, in the # override_dh_auto_build target. rm -rf IsoSpecPy/IsoSpec++ rm -rf .pybuild/ rm -rf tmp-install/ rm -rf IsoSpec++/IsoSpec++ rm -rf IsoSpecPy/build/ rm -rf man/html/ rm -rf man/latex/ rm -rf man/man/ # Now the default target dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars debian/files rm -fr -- debian/libisospec\+\+-dev/ debian/tmp/ debian/libisospec\+\+2/ debian/python3-isospec/ debian/libisospec\+\+-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Verzeichnis „/build/isospec-2.1.3“ wird verlassen debian/rules build dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh build --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Verzeichnis „/build/isospec-2.1.3“ wird betreten dpkg-query: Kein Paket gefunden, das auf r-base-dev passt dpkg-query: Kein Paket gefunden, das auf r-base-core passt dh_auto_configure -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy install -d /build/isospec-2.1.3/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p 3.9 --dir IsoSpecPy I: pybuild base:232: python3.9 setup.py config running config dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 install -d obj-i686-linux-gnu cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-2.1.3/obj-i686-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/isospec-2.1.3/obj-i686-linux-gnu dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-2.1.3/obj-i686-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-2.1.3/obj-i686-linux-gnu dh override_dh_auto_configure --with python3 make[1]: Verzeichnis „/build/isospec-2.1.3“ wird verlassen rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_build make[1]: Verzeichnis „/build/isospec-2.1.3“ wird betreten dpkg-query: Kein Paket gefunden, das auf r-base-dev passt dpkg-query: Kein Paket gefunden, das auf r-base-core passt dh_auto_configure -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy pybuild --configure -i python{version} -p 3.9 --dir IsoSpecPy I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy pybuild --build -i python{version} -p 3.9 --dir IsoSpecPy I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/confs_passthrough.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/Advanced.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/IsoSpecPyOld.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/Distributions.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/__init__.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/approximations.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/PeriodicTbl.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/isoFFI.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/Formulas.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy copying IsoSpecPy/IsoSpecPy.py -> /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy running build_ext building 'IsoSpecCppPy' extension creating build creating build/temp.linux-i386-3.9 creating build/temp.linux-i386-3.9/IsoSpec++ i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c IsoSpec++/unity-build.cpp -o build/temp.linux-i386-3.9/IsoSpec++/unity-build.o -O3 -std=c++17 i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/IsoSpec++/unity-build.o -o /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecCppPy.cpython-39-i386-linux-gnu.so dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-2.1.3/obj-i686-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-2.1.3/obj-i686-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j7 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles /build/isospec-2.1.3/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten cd /build/isospec-2.1.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-2.1.3 /build/isospec-2.1.3/IsoSpec++ /build/isospec-2.1.3/obj-i686-linux-gnu /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten cd /build/isospec-2.1.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-2.1.3 /build/isospec-2.1.3/IsoSpec++ /build/isospec-2.1.3/obj-i686-linux-gnu /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake --color= Dependee "/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake" is newer than depender "/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend.internal". Dependee "/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend.internal". Dependee "/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake" is newer than depender "/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend.internal". Dependee "/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend.internal". Scanning dependencies of target IsoSpec++-shared Scanning dependencies of target IsoSpec++-static make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten [ 25%] Building CXX object IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o cd /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ && /usr/bin/c++ -DIsoSpec___shared_EXPORTS -I/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ -I/build/isospec-2.1.3/IsoSpec++ -g -O2 -fdebug-prefix-map=/build/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-unknown-pragmas -Wall -Wextra -pedantic -std=gnu++17 -o CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -c /build/isospec-2.1.3/IsoSpec++/unity-build.cpp [ 50%] Building CXX object IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o cd /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ && /usr/bin/c++ -I/build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ -I/build/isospec-2.1.3/IsoSpec++ -g -O2 -fdebug-prefix-map=/build/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unknown-pragmas -Wall -Wextra -pedantic -std=gnu++17 -o CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -c /build/isospec-2.1.3/IsoSpec++/unity-build.cpp [ 75%] Linking CXX shared library libIsoSpec++.so cd /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/isospec-2.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libIsoSpec++.so.2 -o libIsoSpec++.so.2.1.3 CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o cd /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_symlink_library libIsoSpec++.so.2.1.3 libIsoSpec++.so.2 libIsoSpec++.so make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen [ 75%] Built target IsoSpec++-shared [100%] Linking CXX static library libIsoSpec++.a cd /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ && /usr/bin/cmake -P CMakeFiles/IsoSpec++-static.dir/cmake_clean_target.cmake cd /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-static.dir/link.txt --verbose=1 /usr/bin/ar qc libIsoSpec++.a CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o /usr/bin/ranlib libIsoSpec++.a make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen [100%] Built target IsoSpec++-static make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-2.1.3/obj-i686-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-2.1.3/obj-i686-linux-gnu # Generate the dev-doc in the man/hml and man/latex directories #doxygen man/doxyfile dh_auto_build -O--buildsyste=cmake -- html_doc cd obj-i686-linux-gnu && make -j7 "INSTALL=install --strip-program=true" html_doc VERBOSE=1 make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten cd /build/isospec-2.1.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-2.1.3 /build/isospec-2.1.3/man /build/isospec-2.1.3/obj-i686-linux-gnu /build/isospec-2.1.3/obj-i686-linux-gnu/man /build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake --color= Dependee "/build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake" is newer than depender "/build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/html_doc.dir/depend.internal". Dependee "/build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/html_doc.dir/depend.internal". Scanning dependencies of target html_doc make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten [100%] Doxygen-based developer html documentation generation cd /build/isospec-2.1.3/man && doxygen doxyfile warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/isospec-2.1.3/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /build/isospec-2.1.3/IsoSpec++/allocator.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/allocator.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/allocator.h... Parsing file /build/isospec-2.1.3/IsoSpec++/allocator.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/btrd.h... Parsing file /build/isospec-2.1.3/IsoSpec++/btrd.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/conf.h... Parsing file /build/isospec-2.1.3/IsoSpec++/conf.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/cwrapper.h... Parsing file /build/isospec-2.1.3/IsoSpec++/cwrapper.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Parsing file /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/element_tables.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/element_tables.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/element_tables.h... Parsing file /build/isospec-2.1.3/IsoSpec++/element_tables.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/fasta.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/fasta.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/fasta.h... Parsing file /build/isospec-2.1.3/IsoSpec++/fasta.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Parsing file /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/isoMath.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/isoMath.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/isoMath.h... Parsing file /build/isospec-2.1.3/IsoSpec++/isoMath.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/isoSpec++.h... Parsing file /build/isospec-2.1.3/IsoSpec++/isoSpec++.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Parsing file /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/misc.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/misc.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/misc.h... Parsing file /build/isospec-2.1.3/IsoSpec++/misc.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/mman.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/mman.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/mman.h... Parsing file /build/isospec-2.1.3/IsoSpec++/mman.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/operators.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/operators.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/operators.h... Parsing file /build/isospec-2.1.3/IsoSpec++/operators.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/platform.h... Parsing file /build/isospec-2.1.3/IsoSpec++/platform.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/platform_incl.h... Parsing file /build/isospec-2.1.3/IsoSpec++/platform_incl.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/pod_vector.h... Parsing file /build/isospec-2.1.3/IsoSpec++/pod_vector.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/summator.h... Parsing file /build/isospec-2.1.3/IsoSpec++/summator.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/unity-build.cpp... Parsing file /build/isospec-2.1.3/IsoSpec+/build/isospec-2.1.3/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:35: warning: Compound IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:439: warning: Compound IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:542: warning: Compound IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:30: warning: Compound pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:379: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command +/unity-build.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/isospec-2.1.3/IsoSpec++/allocator.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/allocator.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/btrd.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/conf.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/cwrapper.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/element_tables.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/element_tables.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/fasta.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/fasta.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/isoMath.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/isoMath.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/isoSpec++.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/misc.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/misc.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/mman.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/mman.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/operators.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/operators.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/platform.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/platform_incl.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/pod_vector.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/summator.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/unity-build.cpp... Generating file documentati/build/isospec-2.1.3/IsoSpec++/pod_vector.h:159: warning: Member iterator (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:160: warning: Member const_iterator (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:161: warning: Member value_type (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:162: warning: Member size_type (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:163: warning: Member reference (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:164: warning: Member const_reference (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:41: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:53: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:63: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:70: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:81: warning: Member reserve(size_t n) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:87: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:94: warning: Member push_back(const T &val) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:102: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:108: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:114: warning: Member size() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:119: warning: Member capacity() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:124: warning: Member data() noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:129: warning: Member data() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:134: warning: Member empty() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:139: warning: Member back() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:145: warning: Member pop_back() noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:152: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:166: warning: Member begin() noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:167: warning: Member begin() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:168: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:169: warning: Member end() noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:170: warning: Member end() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:171: warning: Member cend() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:173: warning: Member front() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:179: warning: Member clear() (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:337: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:338: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:339: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:340: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:341: warning: Member reference (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:342: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:203: warning: Member init() (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:205: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:217: warning: Member unsafe_pod_vector(unsafe_pod_vector< T > &&other) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:224: warning: Member free() (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:226: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:237: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:243: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:257: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:265: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:272: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:280: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:286: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:292: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:297: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:302: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:307: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:312: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:317: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:323: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:330: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:344: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:345: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:346: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:347: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:348: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:349: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:351: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:357: warning: Member clear() (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.h:33: warning: Member parse_fasta(const char *fasta, int atomCounts[6]) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp:134: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:150: warning: Member random_gen(random_dev()) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:151: warning: Member stdunif(0.0, 1.0) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:153: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, int n, int start, int end) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, int size, const char *prefix="") (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:99: warning: Member printOffsets(const T **array, int size, const T *offset, const char *prefix="") (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:108: warning: Member printNestedArray(const T **array, const int *shape, int size) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:133: warning: Member dealloc_table(T *tbl, int dim) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:142: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:151: warning: Member get_order(T *order_array, size_t N) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:162: warning: Member get_inverse_order(T *order_array, size_t N) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:173: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:149: warning: Member random_dev (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:50: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented: parameter 'isotopeNo' parameter 'lprobs' parameter 'res' /build/isospec-2.1.3/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:65: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:66: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:68: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:77: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:78: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:80: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:81: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:83: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:84: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:87: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:88: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:89: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:92: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:93: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:94: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:96: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:97: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:99: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:100: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:101: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:103: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:104: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:105: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:107: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:108: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:114: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:159: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:161: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:170: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:205: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:110: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:111: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:172: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:188: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:200: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:207: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:219: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:224: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:225: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:121: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:128: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:141: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:155: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:156: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:37: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:38: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:39: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:40: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:41: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:42: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:43: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:44: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:45: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:46: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:47: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:48: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:49: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:110: warning: Found unknown command '\use_nominal_masses' /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\add_water' /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:113: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented: parameter 'use_nominal_masses' parameter 'add_water' /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:339: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:339: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:346: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:483: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:485: warning: Member IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:499: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:534: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:553: warning: Member IsoStochasticGenerator(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0) (function) of class IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:555: warning: Member count() const (function) of class IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:226: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:227: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:228: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:195: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:247: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:248: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:249: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:250: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:251: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:252: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:253: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:257: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:263: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:379: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:364: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:374: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/isospec-2.1.3/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:129: warning: Member operator()(unsigned int i, unsigned int j) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:146: warning: Member operator()(int m1, int m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. on... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound pod_vector... Generating docs for compound unsafe_pod_vector... Generating namespace index... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ProbAndConfPtr... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::FixedEnvelope... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoOrderedGenerator... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::IsoLayeredGenerator... Generating docs for compound IsoSpec::IsoStochasticGenerator... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::LayeredMarginal... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 1142/65536 hits=7442 misses=1222 finished... make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen [100%] Built target html_doc make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 0 make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen dh_auto_build -O--buildsyste=cmake -- pdf_doc cd obj-i686-linux-gnu && make -j7 "INSTALL=install --strip-program=true" pdf_doc VERBOSE=1 make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 pdf_doc make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/pdf_doc.dir/all make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/depend make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten cd /build/isospec-2.1.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-2.1.3 /build/isospec-2.1.3/man /build/isospec-2.1.3/obj-i686-linux-gnu /build/isospec-2.1.3/obj-i686-linux-gnu/man /build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/pdf_doc.dir/DependInfo.cmake --color= Dependee "/build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/pdf_doc.dir/DependInfo.cmake" is newer than depender "/build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/pdf_doc.dir/depend.internal". Dependee "/build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/pdf_doc.dir/depend.internal". Scanning dependencies of target pdf_doc make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/build make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten [100%] Doxygen-based developer pdf documentation generation cd /build/isospec-2.1.3/man/latex && make make[6]: Verzeichnis „/build/isospec-2.1.3/man/latex“ wird betreten make[6]: Warnung: Kein Jobserver verfügbar: -j1 wird gesetzt. Fügen Sie der Ursprungsregel „+“ hinzu. rm -f *.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl refman.pdf pdflatex refman This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. 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(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) No file refman.toc. (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] Chapter 1. (./namespaces.tex LaTeX Warning: Reference `namespace_iso_spec' on page 1 undefined on input line 3. ) [1] [2] Chapter 2. 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LaTeX Warning: Reference `class_iso_spec_1_1_table_order' on page 5 undefined o n input line 27. LaTeX Warning: Reference `class_iso_spec_1_1_t_summator' on page 5 undefined on input line 28. LaTeX Warning: Reference `classunsafe__pod__vector' on page 5 undefined on inpu t line 29. ) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [9] Package longtable Warning: Column widths have changed (longtable) in table 4.1 on input line 304. [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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Package longtable Warning: Column widths have changed (longtable) in table 5.3 on input line 187. [20] [21]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_spec_1_1_iso_ge nerator.pdf> [22] Underfull \hbox (badness 10000) detected at line 76 [][][] Underfull \hbox (badness 10000) detected at line 93 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 98--99 []\T1/phv/m/n/10 Reimplemented in [], [], and []. [23] Underfull \hbox (badness 10000) detected at line 114 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 119--120 []\T1/phv/m/n/10 Reimplemented in [], [], and []. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] Package longtable Warning: Column widths have changed (longtable) in table 4.1 on input line 304. [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./class_iso_spec_1_1_conf_equal.tex) (./class_iso_spec_1_1_conf_order.tex [13]) (./class_iso_spec_1_1_conf_order_marginal.tex) (./class_iso_spec_1_1_conf_order_marginal_descending.tex) (./class_iso_spec_1_1_dirty_allocator.tex [14]) (./class_iso_spec_1_1_fixed_envelope.tex [15] [16]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [17] [18] [19] [20] [21]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_spec_1_1_iso_ge nerator.pdf> [22] Underfull \hbox (badness 10000) detected at line 76 [][][] Underfull \hbox (badness 10000) detected at line 93 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 98--99 []\T1/phv/m/n/10 Reimplemented in [], [], and []. [23] Underfull \hbox (badness 10000) detected at line 114 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 119--120 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 135 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 140--141 []\T1/phv/m/n/10 Reimplemented in [], [], and []. ) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso_lay ered_generator.pdf> [24] [25] Underfull \hbox (badness 10000) detected at line 68 [][][] Underfull \hbox (badness 10000) in paragraph at lines 83--84 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 89 [][][] Underfull \hbox (badness 10000) in paragraph at lines 104--105 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 110 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], [26] Underfull \hbox (badness 10000) detected at line 131 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [27] Underfull \hbox (badness 10000) detected at line 60 [][][] [28]) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_ iso_stochastic_generator.pdf> Underfull \hbox (badness 10000) in paragraph at lines 44--45 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) [29] Underfull \hbox (badness 10000) detected at line 50 [][][] Underfull \hbox (badness 10000) detected at line 71 [][][] Underfull \hbox (badness 10000) in paragraph at lines 86--87 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 92 [][][] Underfull \hbox (badness 10000) in paragraph at lines 107--108 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 113 [][][] [30]) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_i so_threshold_generator.pdf> [31] Overfull \hbox (18.89209pt too wide) in paragraph at lines 94--95 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], [32] Underfull \hbox (badness 10000) detected at line 100 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 131 [][][] Underfull \hbox (badness 10000) in paragraph at lines 146--147 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 152 [][][] Underfull \hbox (badness 10000) in paragraph at lines 167--168 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 173 [][][] [33]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex <./class_iso_spec_1_1_layered_margin al.pdf> [34] [35] Underfull \hbox (badness 10000) detected at line 109 [][][] [36] Underfull \hbox (badness 10000) detected at line 126 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [37] [38] Underfull \hbox (badness 10000) detected at line 128 [][][] Underfull \hbox (badness 10000) detected at line 148 [][][] Underfull \hbox (badness 10000) detected at line 165 [][][] [39] Underfull \hbox (badness 10000) detected at line 182 [][][] Underfull \hbox (badness 10000) detected at line 199 [][][] Underfull \hbox (badness 10000) detected at line 216 [][][] [40] Underfull \hbox (badness 10000) detected at line 233 [][][] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 281 [][][] [41] Underfull \hbox (badness 10000) detected at line 298 [][][] Underfull \hbox (badness 10000) detected at line 320 [][][] [42] [43]) (./class_iso_spec_1_1_marginal_trek.tex <./class_iso_spec_1_1_margin al_trek.pdf> [44] Underfull \hbox (badness 10000) detected at line 87 [][][] [45] Underfull \hbox (badness 10000) detected at line 111 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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[46]) (./class_iso_spec_1_1_precalculated_marginal.tex [47] <./class_iso_spec_1 _1_precalculated_marginal.pdf> [48] Underfull \hbox (badness 10000) detected at line 108 [][][] [49] Underfull \hbox (badness 10000) detected at line 133 [][][] Underfull \hbox (badness 10000) detected at line 155 [][][] Underfull \hbox (badness 10000) detected at line 172 [][][] [50] Underfull \hbox (badness 10000) detected at line 194 [][][] Underfull \hbox (badness 10000) detected at line 211 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] [51] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] ) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex) (./class_iso_spec_1_1_reverse_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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Transcript written in refman.ilg. pdflatex refman This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./class_iso_spec_1_1_conf_equal.tex) (./class_iso_spec_1_1_conf_order.tex [13]) (./class_iso_spec_1_1_conf_order_marginal.tex) (./class_iso_spec_1_1_conf_order_marginal_descending.tex) (./class_iso_spec_1_1_dirty_allocator.tex [14]) (./class_iso_spec_1_1_fixed_envelope.tex [15] [16]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [17] [18] [19] [20] [21]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_spec_1_1_iso_ge nerator.pdf> [22] Underfull \hbox (badness 10000) detected at line 76 [][][] Underfull \hbox (badness 10000) detected at line 93 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 98--99 []\T1/phv/m/n/10 Reimplemented in [], [], and []. [23] Underfull \hbox (badness 10000) detected at line 114 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 119--120 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 135 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 140--141 []\T1/phv/m/n/10 Reimplemented in [], [], and []. ) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso_lay ered_generator.pdf> [24] [25] Underfull \hbox (badness 10000) detected at line 68 [][][] Underfull \hbox (badness 10000) in paragraph at lines 83--84 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 89 [][][] Underfull \hbox (badness 10000) in paragraph at lines 104--105 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 110 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], [26] Underfull \hbox (badness 10000) detected at line 131 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [27] Underfull \hbox (badness 10000) detected at line 60 [][][] [28]) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_ iso_stochastic_generator.pdf> Underfull \hbox (badness 10000) in paragraph at lines 44--45 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) [29] Underfull \hbox (badness 10000) detected at line 50 [][][] Underfull \hbox (badness 10000) detected at line 71 [][][] Underfull \hbox (badness 10000) in paragraph at lines 86--87 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 92 [][][] Underfull \hbox (badness 10000) in paragraph at lines 107--108 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 113 [][][] [30]) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_i so_threshold_generator.pdf> [31] Overfull \hbox (18.89209pt too wide) in paragraph at lines 94--95 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], [32] Underfull \hbox (badness 10000) detected at line 100 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 131 [][][] Underfull \hbox (badness 10000) in paragraph at lines 146--147 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 152 [][][] Underfull \hbox (badness 10000) in paragraph at lines 167--168 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 173 [][][] [33]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex <./class_iso_spec_1_1_layered_margin al.pdf> [34] [35] Underfull \hbox (badness 10000) detected at line 109 [][][] [36] Underfull \hbox (badness 10000) detected at line 126 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [37] [38] Underfull \hbox (badness 10000) detected at line 128 [][][] Underfull \hbox (badness 10000) detected at line 148 [][][] Underfull \hbox (badness 10000) detected at line 165 [][][] [39] Underfull \hbox (badness 10000) detected at line 182 [][][] Underfull \hbox (badness 10000) detected at line 199 [][][] Underfull \hbox (badness 10000) detected at line 216 [][][] [40] Underfull \hbox (badness 10000) detected at line 233 [][][] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 281 [][][] [41] Underfull \hbox (badness 10000) detected at line 298 [][][] Underfull \hbox (badness 10000) detected at line 320 [][][] [42] [43]) (./class_iso_spec_1_1_marginal_trek.tex <./class_iso_spec_1_1_margin al_trek.pdf> [44] Underfull \hbox (badness 10000) detected at line 87 [][][] [45] Underfull \hbox (badness 10000) detected at line 111 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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[46]) (./class_iso_spec_1_1_precalculated_marginal.tex [47] <./class_iso_spec_1 _1_precalculated_marginal.pdf> [48] Underfull \hbox (badness 10000) detected at line 108 [][][] [49] Underfull \hbox (badness 10000) detected at line 133 [][][] Underfull \hbox (badness 10000) detected at line 155 [][][] Underfull \hbox (badness 10000) detected at line 172 [][][] [50] Underfull \hbox (badness 10000) detected at line 194 [][][] Underfull \hbox (badness 10000) detected at line 211 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] [51] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] ) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex) (./class_iso_spec_1_1_reverse_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [52]) (./class_iso_spec_1_1_s_summator.tex) (./class_iso_spec_1_1_summator.tex [53]) (./class_iso_spec_1_1_table_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./class_iso_spec_1_1_t_summator.tex) (./classunsafe__pod__vector.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [54] [55]) [56] (./refman.ind [57] [58] [59]) (./refman.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (65 pages, 306923 bytes). Transcript written on refman.log. make[6]: Verzeichnis „/build/isospec-2.1.3/man/latex“ wird verlassen make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen [100%] Built target pdf_doc make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 0 make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen # sed-based replacement of the cloudflare URL with the MathJax.js file from the # libjs-mathjax package sh debian/replace-mathjax-cloudflare-url-local-file.sh # Recreate the symlink that was created by setup.py # and that we had to remove at the override_dh_clean target. ln -sf IsoSpec++ IsoSpecPy/IsoSpec++ make[1]: Verzeichnis „/build/isospec-2.1.3“ wird verlassen dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-01TnqPVc create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh binary --with python3 dh_testroot dh_prep rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars rm -fr -- debian/.debhelper/generated/libisospec\+\+-dev/ debian/libisospec\+\+-dev/ debian/tmp/ debian/.debhelper/generated/libisospec\+\+2/ debian/libisospec\+\+2/ debian/.debhelper/generated/python3-isospec/ debian/python3-isospec/ debian/.debhelper/generated/libisospec\+\+-doc/ debian/libisospec\+\+-doc/ rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+-doc.debhelper.log debian/libisospec\+\+2.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_install make[1]: Verzeichnis „/build/isospec-2.1.3“ wird betreten dpkg-query: Kein Paket gefunden, das auf r-base-dev passt dpkg-query: Kein Paket gefunden, das auf r-base-core passt dh_auto_configure -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy pybuild --configure -i python{version} -p 3.9 --dir IsoSpecPy I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy pybuild --build -i python{version} -p 3.9 --dir IsoSpecPy I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py running build_ext dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-2.1.3/obj-i686-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-2.1.3/obj-i686-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j7 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles /build/isospec-2.1.3/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten cd /build/isospec-2.1.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-2.1.3 /build/isospec-2.1.3/IsoSpec++ /build/isospec-2.1.3/obj-i686-linux-gnu /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten cd /build/isospec-2.1.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-2.1.3 /build/isospec-2.1.3/IsoSpec++ /build/isospec-2.1.3/obj-i686-linux-gnu /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++ /build/isospec-2.1.3/obj-i686-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake --color= make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make[4]: Für das Ziel „IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build“ ist nichts zu tun. make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make[4]: Für das Ziel „IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build“ ist nichts zu tun. make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen [ 50%] Built target IsoSpec++-static [100%] Built target IsoSpec++-shared make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /build/isospec-2.1.3 -- CMAKE_BINARY_DIR: /build/isospec-2.1.3/obj-i686-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb) [Datei oder Verzeichnis nicht gefunden]. -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done -- Generating done -- Build files have been written to: /build/isospec-2.1.3/obj-i686-linux-gnu # Generate the dev-doc in the man/hml and man/latex directories #doxygen man/doxyfile dh_auto_build -O--buildsyste=cmake -- html_doc cd obj-i686-linux-gnu && make -j7 "INSTALL=install --strip-program=true" html_doc VERBOSE=1 make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten cd /build/isospec-2.1.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-2.1.3 /build/isospec-2.1.3/man /build/isospec-2.1.3/obj-i686-linux-gnu /build/isospec-2.1.3/obj-i686-linux-gnu/man /build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake --color= make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten [100%] Doxygen-based developer html documentation generation cd /build/isospec-2.1.3/man && doxygen doxyfile warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/isospec-2.1.3/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /build/isospec-2.1.3/IsoSpec++/allocator.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/allocator.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/allocator.h... Parsing file /build/isospec-2.1.3/IsoSpec++/allocator.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/btrd.h... Parsing file /build/isospec-2.1.3/IsoSpec++/btrd.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/conf.h... Parsing file /build/isospec-2.1.3/IsoSpec++/conf.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/cwrapper.h... Parsing file /build/isospec-2.1.3/IsoSpec++/cwrapper.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Parsing file /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/element_tables.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/element_tables.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/element_tables.h... Parsing file /build/isospec-2.1.3/IsoSpec++/element_tables.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/fasta.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/fasta.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/fasta.h... Parsing file /build/isospec-2.1.3/IsoSpec++/fasta.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Parsing file /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/isoMath.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/isoMath.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/isoMath.h... Parsing file /build/isospec-2.1.3/IsoSpec++/isoMath.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/isoSpec++.h... Parsing file /build/isospec-2.1.3/IsoSpec++/isoSpec++.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Parsing file /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/misc.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/misc.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/misc.h... Parsing file /build/isospec-2.1.3/IsoSpec++/misc.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/mman.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/mman.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/mman.h... Parsing file /build/isospec-2.1.3/IsoSpec++/mman.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/operators.cpp... Parsing file /build/isospec-2.1.3/IsoSpec++/operators.cpp... Preprocessing /build/isospec-2.1.3/IsoSpec++/operators.h... Parsing file /build/isospec-2.1.3/IsoSpec++/operators.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/platform.h... Parsing file /build/isospec-2.1.3/IsoSpec++/platform.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/platform_incl.h... Parsing file /build/isospec-2.1.3/IsoSpec++/platform_incl.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/pod_vector.h... Parsing file /build/isospec-2.1.3/IsoSpec++/pod_vector.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/summator.h... Parsing file /build/isospec-2.1.3/IsoSpec++/summator.h... Preprocessing /build/isospec-2.1.3/IsoSpec++/unity-build.cpp... Parsing file /build/isospec-2.1.3/IsoSpec+/build/isospec-2.1.3/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:35: warning: Compound IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:439: warning: Compound IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:542: warning: Compound IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:30: warning: Compound pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:379: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command +/unity-build.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/isospec-2.1.3/IsoSpec++/allocator.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/allocator.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/btrd.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/conf.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/cwrapper.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/cwrapper.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/element_tables.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/element_tables.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/fasta.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/fasta.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/isoMath.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/isoMath.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/isoSpec++.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/isoSpec++.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/misc.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/misc.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/mman.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/mman.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/operators.cpp... Generating code for file /build/isospec-2.1.3/IsoSpec++/operators.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/platform.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/platform_incl.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/pod_vector.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/summator.h... Generating code for file /build/isospec-2.1.3/IsoSpec++/unity-build.cpp... Generating file documentati/build/isospec-2.1.3/IsoSpec++/pod_vector.h:159: warning: Member iterator (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:160: warning: Member const_iterator (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:161: warning: Member value_type (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:162: warning: Member size_type (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:163: warning: Member reference (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:164: warning: Member const_reference (typedef) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:41: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:53: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:63: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:70: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:81: warning: Member reserve(size_t n) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:87: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:94: warning: Member push_back(const T &val) (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:102: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:108: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:114: warning: Member size() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:119: warning: Member capacity() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:124: warning: Member data() noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:129: warning: Member data() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:134: warning: Member empty() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:139: warning: Member back() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:145: warning: Member pop_back() noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:152: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:166: warning: Member begin() noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:167: warning: Member begin() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:168: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:169: warning: Member end() noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:170: warning: Member end() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:171: warning: Member cend() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:173: warning: Member front() const noexcept (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:179: warning: Member clear() (function) of class pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:337: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:338: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:339: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:340: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:341: warning: Member reference (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:342: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:203: warning: Member init() (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:205: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:217: warning: Member unsafe_pod_vector(unsafe_pod_vector< T > &&other) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:224: warning: Member free() (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:226: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:237: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:243: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:257: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:265: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:272: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:280: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:286: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:292: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:297: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:302: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:307: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:312: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:317: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:323: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:330: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:344: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:345: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:346: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:347: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:348: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:349: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:351: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/pod_vector.h:357: warning: Member clear() (function) of class unsafe_pod_vector is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.h:33: warning: Member parse_fasta(const char *fasta, int atomCounts[6]) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.cpp:134: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:150: warning: Member random_gen(random_dev()) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:151: warning: Member stdunif(0.0, 1.0) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:153: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, int n, int start, int end) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, int size, const char *prefix="") (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:99: warning: Member printOffsets(const T **array, int size, const T *offset, const char *prefix="") (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:108: warning: Member printNestedArray(const T **array, const int *shape, int size) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:133: warning: Member dealloc_table(T *tbl, int dim) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:142: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:151: warning: Member get_order(T *order_array, size_t N) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:162: warning: Member get_inverse_order(T *order_array, size_t N) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/misc.h:173: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.cpp:149: warning: Member random_dev (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of IsoSpec is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.cpp:50: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented: parameter 'isotopeNo' parameter 'lprobs' parameter 'res' /build/isospec-2.1.3/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-2.1.3/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:65: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:66: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:68: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:77: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:78: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:80: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:81: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:83: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:84: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:87: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:88: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:89: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:92: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:93: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:94: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:96: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:97: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:99: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:100: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:101: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:103: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:104: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:105: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:107: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:108: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:114: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:159: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:161: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:170: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:205: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:110: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:111: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:172: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:188: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:200: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:207: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:219: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:224: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:225: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:121: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:128: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:141: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:155: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:156: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:37: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:38: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:39: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:40: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:41: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:42: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:43: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:44: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:45: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:46: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:47: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:48: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/fixedEnvelopes.h:49: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:110: warning: Found unknown command '\use_nominal_masses' /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\add_water' /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:113: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented: parameter 'use_nominal_masses' parameter 'add_water' /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:339: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:339: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:346: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:483: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:485: warning: Member IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:499: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:534: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:553: warning: Member IsoStochasticGenerator(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0) (function) of class IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:555: warning: Member count() const (function) of class IsoSpec::IsoStochasticGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /build/isospec-2.1.3/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:226: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:227: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:228: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:195: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:247: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:248: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:249: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:250: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:251: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:252: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:253: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:257: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:263: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:379: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:364: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /build/isospec-2.1.3/IsoSpec++/marginalTrek++.h:374: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /build/isospec-2.1.3/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:129: warning: Member operator()(unsigned int i, unsigned int j) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-2.1.3/IsoSpec++/operators.h:146: warning: Member operator()(int m1, int m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /build/isospec-2.1.3/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. on... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound pod_vector... Generating docs for compound unsafe_pod_vector... Generating namespace index... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ProbAndConfPtr... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::FixedEnvelope... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoOrderedGenerator... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::IsoLayeredGenerator... Generating docs for compound IsoSpec::IsoStochasticGenerator... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::LayeredMarginal... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 1142/65536 hits=7442 misses=1222 finished... make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen [100%] Built target html_doc make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 0 make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen dh_auto_build -O--buildsyste=cmake -- pdf_doc cd obj-i686-linux-gnu && make -j7 "INSTALL=install --strip-program=true" pdf_doc VERBOSE=1 make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 pdf_doc make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/pdf_doc.dir/all make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/depend make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten cd /build/isospec-2.1.3/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/isospec-2.1.3 /build/isospec-2.1.3/man /build/isospec-2.1.3/obj-i686-linux-gnu /build/isospec-2.1.3/obj-i686-linux-gnu/man /build/isospec-2.1.3/obj-i686-linux-gnu/man/CMakeFiles/pdf_doc.dir/DependInfo.cmake --color= make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/build make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten [100%] Doxygen-based developer pdf documentation generation cd /build/isospec-2.1.3/man/latex && make make[6]: Verzeichnis „/build/isospec-2.1.3/man/latex“ wird betreten make[6]: Warnung: Kein Jobserver verfügbar: -j1 wird gesetzt. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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[46]) (./class_iso_spec_1_1_precalculated_marginal.tex [47] <./class_iso_spec_1 _1_precalculated_marginal.pdf> [48] Underfull \hbox (badness 10000) detected at line 108 [][][] [49] Underfull \hbox (badness 10000) detected at line 133 [][][] Underfull \hbox (badness 10000) detected at line 155 [][][] Underfull \hbox (badness 10000) detected at line 172 [][][] [50] Underfull \hbox (badness 10000) detected at line 194 [][][] Underfull \hbox (badness 10000) detected at line 211 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] [51] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] ) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex) (./class_iso_spec_1_1_reverse_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [7] [8] Overfull \hbox (157.29202pt too wide) in paragraph at lines 255--258 [][] \T1/phv/m/n/10 const dou-ble \T1/phv/b/n/10 logpi \T1/phv/m/n/10 = 1.[]144 7298858494001741434273513530587116472948129153115715136230714721377698848260797 83623270275489708 [9] [10]) [11] [12] Chapter 5. (./class_iso_spec_1_1_allocator.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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Underfull \hbox (badness 10000) detected at line 135 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 140--141 []\T1/phv/m/n/10 Reimplemented in [], [], and []. ) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso_lay ered_generator.pdf> [24] [25] Underfull \hbox (badness 10000) detected at line 68 [][][] Underfull \hbox (badness 10000) in paragraph at lines 83--84 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 89 [][][] Underfull \hbox (badness 10000) in paragraph at lines 104--105 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 110 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], [26] Underfull \hbox (badness 10000) detected at line 131 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [27] Underfull \hbox (badness 10000) detected at line 60 [][][] [28]) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_ iso_stochastic_generator.pdf> Underfull \hbox (badness 10000) in paragraph at lines 44--45 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) [29] Underfull \hbox (badness 10000) detected at line 50 [][][] Underfull \hbox (badness 10000) detected at line 71 [][][] Underfull \hbox (badness 10000) in paragraph at lines 86--87 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 92 [][][] Underfull \hbox (badness 10000) in paragraph at lines 107--108 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 113 [][][] [30]) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_i so_threshold_generator.pdf> [31] Overfull \hbox (18.89209pt too wide) in paragraph at lines 94--95 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], [32] Underfull \hbox (badness 10000) detected at line 100 [][][] Underfull \hbox (badness 10000) in paragraph at lines 125--126 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 131 [][][] Underfull \hbox (badness 10000) in paragraph at lines 146--147 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 152 [][][] Underfull \hbox (badness 10000) in paragraph at lines 167--168 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 173 [][][] [33]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex <./class_iso_spec_1_1_layered_margin al.pdf> [34] [35] Underfull \hbox (badness 10000) detected at line 109 [][][] [36] Underfull \hbox (badness 10000) detected at line 126 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [37] [38] Underfull \hbox (badness 10000) detected at line 128 [][][] Underfull \hbox (badness 10000) detected at line 148 [][][] Underfull \hbox (badness 10000) detected at line 165 [][][] [39] Underfull \hbox (badness 10000) detected at line 182 [][][] Underfull \hbox (badness 10000) detected at line 199 [][][] Underfull \hbox (badness 10000) detected at line 216 [][][] [40] Underfull \hbox (badness 10000) detected at line 233 [][][] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 281 [][][] [41] Underfull \hbox (badness 10000) detected at line 298 [][][] Underfull \hbox (badness 10000) detected at line 320 [][][] [42] [43]) (./class_iso_spec_1_1_marginal_trek.tex <./class_iso_spec_1_1_margin al_trek.pdf> [44] Underfull \hbox (badness 10000) detected at line 87 [][][] [45] Underfull \hbox (badness 10000) detected at line 111 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./classpod__vector.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [46]) (./class_iso_spec_1_1_precalculated_marginal.tex [47] <./class_iso_spec_1 _1_precalculated_marginal.pdf> [48] Underfull \hbox (badness 10000) detected at line 108 [][][] [49] Underfull \hbox (badness 10000) detected at line 133 [][][] Underfull \hbox (badness 10000) detected at line 155 [][][] Underfull \hbox (badness 10000) detected at line 172 [][][] [50] Underfull \hbox (badness 10000) detected at line 194 [][][] Underfull \hbox (badness 10000) detected at line 211 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] [51] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] ) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex) (./class_iso_spec_1_1_reverse_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [52]) (./class_iso_spec_1_1_s_summator.tex) (./class_iso_spec_1_1_summator.tex [53]) (./class_iso_spec_1_1_table_order.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. ) (./class_iso_spec_1_1_t_summator.tex) (./classunsafe__pod__vector.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [54] [55]) [56] (./refman.ind [57] [58] [59]) (./refman.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (65 pages, 306923 bytes). Transcript written on refman.log. make[6]: Verzeichnis „/build/isospec-2.1.3/man/latex“ wird verlassen make[5]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen [100%] Built target pdf_doc make[4]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen /usr/bin/cmake -E cmake_progress_start /build/isospec-2.1.3/obj-i686-linux-gnu/CMakeFiles 0 make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen # sed-based replacement of the cloudflare URL with the MathJax.js file from the # libjs-mathjax package sh debian/replace-mathjax-cloudflare-url-local-file.sh # Recreate the symlink that was created by setup.py # and that we had to remove at the override_dh_clean target. ln -sf IsoSpec++ IsoSpecPy/IsoSpec++ # Install the Python module dh_auto_install -O--buildsystem=pybuild --sourcedirectory=IsoSpecPy install -d /build/isospec-2.1.3/debian/tmp pybuild --install -i python{version} -p 3.9 --dir IsoSpecPy --dest-dir /build/isospec-2.1.3/debian/tmp I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/isospec-2.1.3/debian/python3-isospec running install running build running build_py running build_ext running install_lib creating /build/isospec-2.1.3/debian/python3-isospec creating /build/isospec-2.1.3/debian/python3-isospec/usr creating /build/isospec-2.1.3/debian/python3-isospec/usr/lib creating /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9 creating /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages creating /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/confs_passthrough.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/Advanced.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/IsoSpecPyOld.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/Distributions.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/__init__.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/approximations.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/PeriodicTbl.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/isoFFI.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/Formulas.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecPy/IsoSpecPy.py -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy copying /build/isospec-2.1.3/.pybuild/cpython3_3.9_isospec/build/IsoSpecCppPy.cpython-39-i386-linux-gnu.so -> /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/confs_passthrough.py to confs_passthrough.cpython-39.pyc byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/Advanced.py to Advanced.cpython-39.pyc byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/IsoSpecPyOld.py to IsoSpecPyOld.cpython-39.pyc byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/Distributions.py to Distributions.cpython-39.pyc byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/__init__.py to __init__.cpython-39.pyc byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/approximations.py to approximations.cpython-39.pyc byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/PeriodicTbl.py to PeriodicTbl.cpython-39.pyc byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/isoFFI.py to isoFFI.cpython-39.pyc byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/Formulas.py to Formulas.cpython-39.pyc byte-compiling /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy/IsoSpecPy.py to IsoSpecPy.cpython-39.pyc /usr/lib/python3.9/dist-packages/IsoSpecPy/IsoSpecPy.py:55: SyntaxWarning: "is not" with a literal. Did you mean "!="? running install_egg_info running egg_info creating IsoSpecPy.egg-info writing IsoSpecPy.egg-info/PKG-INFO writing dependency_links to IsoSpecPy.egg-info/dependency_links.txt writing requirements to IsoSpecPy.egg-info/requires.txt writing top-level names to IsoSpecPy.egg-info/top_level.txt writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt' reading manifest file 'IsoSpecPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'IsoSpecPy/*.dll' writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt' Copying IsoSpecPy.egg-info to /build/isospec-2.1.3/debian/python3-isospec/usr/lib/python3.9/dist-packages/IsoSpecPy-2.1.3.egg-info Skipping SOURCES.txt running install_scripts # Install the C++ library dh_auto_install -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j7 install DESTDIR=/build/isospec-2.1.3/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten /usr/bin/cmake -S/build/isospec-2.1.3 -B/build/isospec-2.1.3/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird betreten make[3]: Für das Ziel „preinstall“ ist nichts zu tun. make[3]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/isospec-2.1.3/debian/tmp/usr/lib/i386-linux-gnu/cmake/isospec++/FindIsoSpec++.cmake -- Installing: /build/isospec-2.1.3/debian/tmp/usr/lib/i386-linux-gnu/cmake/isospec++/IsoSpec++Config.cmake -- Installing: /build/isospec-2.1.3/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/libisospec++.pc -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/logo2_high.pdf -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.svg -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/logo2_long.pdf -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.svg -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/cwrapper_8cpp_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/splitbar.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/functions_vars.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8cpp_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/hierarchy.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/namespace_iso_spec.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/open.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/fasta_8cpp_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/menudata.js -- Installing: 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/build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/iso_math_8cpp_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/namespaces.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/sync_off.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/summator_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8h_source.html -- Installing: 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/build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/nav_h.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/classes.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/platform_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/menu.js -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/folderopen.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/annotated.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/bc_s.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/index.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/classpod__vector.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/functions.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/operators_8cpp_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/bdwn.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/mman_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/misc_8cpp_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/allocator_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/element__tables_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/nav_f.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/tab_b.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8cpp_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/functions_func.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/doxygen.css -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/namespacemembers.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/jquery.js -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/tab_h.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/btrd_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator.png -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/pod__vector_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/classpod__vector-members.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/fasta_8h_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/html/unity-build_8cpp_source.html -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/pdf/refman.pdf -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/pod_vector.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/C++ -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/C++/radiolabelling.cpp -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/C++/water.cpp -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/C++/COMPILING -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python/fasta.py -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python/radiolabelling.py -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python/water.py -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/Python/custom_elements.py -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/R -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/R/radiolabelling.R -- Installing: /build/isospec-2.1.3/debian/tmp/usr/share/doc/isospec/examples/R/water.R -- Installing: /build/isospec-2.1.3/debian/tmp/usr/lib/i386-linux-gnu/libIsoSpec++.so.2.1.3 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/lib/i386-linux-gnu/libIsoSpec++.so.2 -- Installing: /build/isospec-2.1.3/debian/tmp/usr/lib/i386-linux-gnu/libIsoSpec++.a make[2]: Verzeichnis „/build/isospec-2.1.3/obj-i686-linux-gnu“ wird verlassen # Now remove the links, that we'll provide using d/*.links # So that we can use libIsoSpec++.so.* in d/*.install rm -f debian/tmp/usr/lib/*/libIsoSpec++.so rm -f debian/tmp/usr/lib/*/libIsoSpec++.so.2 make[1]: Verzeichnis „/build/isospec-2.1.3“ wird verlassen dh_install install -d debian/libisospec\+\+-dev//usr/lib/i386-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/libIsoSpec\+\+.a debian/libisospec\+\+-dev//usr/lib/i386-linux-gnu/ install -d debian/libisospec\+\+-dev//usr/lib/i386-linux-gnu/cmake cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/cmake/isospec\+\+ debian/libisospec\+\+-dev//usr/lib/i386-linux-gnu/cmake/ install -d debian/libisospec\+\+-dev//usr/lib/i386-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/libisospec\+\+.pc debian/libisospec\+\+-dev//usr/lib/i386-linux-gnu/pkgconfig/ install -d debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+ cp --reflink=auto -a ./IsoSpec\+\+/allocator.h ./IsoSpec\+\+/btrd.h ./IsoSpec\+\+/conf.h ./IsoSpec\+\+/cwrapper.h ./IsoSpec\+\+/dirtyAllocator.h ./IsoSpec\+\+/element_tables.h ./IsoSpec\+\+/fasta.h ./IsoSpec\+\+/fixedEnvelopes.h ./IsoSpec\+\+/isoMath.h ./IsoSpec\+\+/isoSpec\+\+.h ./IsoSpec\+\+/marginalTrek\+\+.h ./IsoSpec\+\+/misc.h ./IsoSpec\+\+/mman.h ./IsoSpec\+\+/operators.h ./IsoSpec\+\+/platform.h ./IsoSpec\+\+/platform_incl.h ./IsoSpec\+\+/pod_vector.h ./IsoSpec\+\+/summator.h debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+/ install -d debian/.debhelper/generated/libisospec\+\+-dev install -d debian/libisospec\+\+2//usr/lib/i386-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so.2.1.3 debian/libisospec\+\+2//usr/lib/i386-linux-gnu/ install -d debian/.debhelper/generated/libisospec\+\+2 install -d debian/.debhelper/generated/python3-isospec install -d debian/libisospec\+\+-doc//usr/share/doc cp --reflink=auto -a debian/tmp/usr/share/doc/isospec debian/libisospec\+\+-doc//usr/share/doc/ install -d debian/.debhelper/generated/libisospec\+\+-doc dh_installdocs install -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/copyright debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/copyright install -d debian/libisospec\+\+2/usr/share/doc/libisospec\+\+2 install -p -m0644 debian/copyright debian/libisospec\+\+2/usr/share/doc/libisospec\+\+2/copyright install -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/copyright debian/python3-isospec/usr/share/doc/python3-isospec/copyright install -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc install -p -m0644 debian/copyright debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/copyright install -d debian/libisospec\+\+-doc/usr/share/doc-base/ install -p -m0644 debian/libisospec\+\+-doc.doc-base debian/libisospec\+\+-doc/usr/share/doc-base/libisospec\+\+ dh_installchangelogs install -p -m0644 debian/changelog debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog install -p -m0644 debian/changelog debian/libisospec\+\+2/usr/share/doc/libisospec\+\+2/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+2/usr/share/doc/libisospec\+\+2/changelog install -p -m0644 debian/changelog debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog install -p -m0644 debian/changelog debian/python3-isospec/usr/share/doc/python3-isospec/changelog.Debian install -p -m0644 ./CHANGELOG debian/python3-isospec/usr/share/doc/python3-isospec/changelog dh_installman install -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 install -p -m0644 debian/tmp/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 install -p -m0644 debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 dh_python3 D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:99: skipping package libisospec++-dev (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:99: skipping package libisospec++2 (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:99: skipping package libisospec++-doc (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:152: source=isospec, binary packages=['python3-isospec'] D: dh_python3 dh_python3:183: processing package python3-isospec... D: dh_python3 fs:49: moving files from debian/python3-isospec/usr/lib/python3.9/dist-packages to debian/python3-isospec/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-isospec details = {'requires.txt': {'debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy-2.1.3.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-isospec D: dh_python3 pydist:142: trying to find dependency for cffi (python=None) D: dh_python3 depends:275: D={'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3 (<< 3.10)', 'python3 (>= 3.9~)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_perl dh_link rm -f debian/libisospec\+\+-dev/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so ln -s libIsoSpec\+\+.so.2.1.3 debian/libisospec\+\+-dev/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so rm -f debian/libisospec\+\+2/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so.2 ln -s libIsoSpec\+\+.so.2.1.3 debian/libisospec\+\+2/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so.2 dh_strip_nondeterminism Using 1602770684 as canonical time Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/open.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/folderclosed.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/doc.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/search/search_l.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/search/search_m.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/search/search_r.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bdwn.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/folderopen.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/isospec/html/bc_s.png using File::StripNondeterminism::handlers::png dh_compress cd debian/libisospec++-dev cd debian/python3-isospec cd debian/libisospec++2 cd debian/libisospec++-doc chmod a-x usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+2/changelog usr/share/doc/libisospec\+\+2/changelog.Debian gzip -9nf usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+2/changelog usr/share/doc/libisospec\+\+2/changelog.Debian cd '/build/isospec-2.1.3' cd '/build/isospec-2.1.3' chmod a-x usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 gzip -9nf usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 chmod a-x usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/isospec/images/logo2_high.pdf usr/share/doc/isospec/images/logo2_long.pdf usr/share/doc/isospec/pdf/refman.pdf usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian gzip -9nf usr/share/doc/isospec/examples/C\+\+/water.cpp usr/share/doc/isospec/images/logo2_high.pdf usr/share/doc/isospec/images/logo2_long.pdf usr/share/doc/isospec/pdf/refman.pdf usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian cd '/build/isospec-2.1.3' cd '/build/isospec-2.1.3' dh_fixperms find debian/libisospec++-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-isospec -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec++-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec++2 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec\+\+2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+2/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+-dev/usr/share/man debian/libisospec\+\+-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing dh_dwz -a dwz -- debian/libisospec\+\+2/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so.2.1.3 dwz -- debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-39-i386-linux-gnu.so dh_strip -a install -d debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/libisospec\+\+2/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so.2.1.3 debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/a7/52ac81cf403fbe0ac8bed0277c16583830f762.debug strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libisospec\+\+-dev/usr/lib/i386-linux-gnu/libIsoSpec\+\+.a install -d debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-39-i386-linux-gnu.so debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/81/fca7e689f9c6ebbee676765f9293b2548ccf82.debug chmod 0644 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/a7/52ac81cf403fbe0ac8bed0277c16583830f762.debug chown 0:0 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/a7/52ac81cf403fbe0ac8bed0277c16583830f762.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libisospec\+\+2/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so.2.1.3 objcopy --add-gnu-debuglink debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/lib/debug/.build-id/a7/52ac81cf403fbe0ac8bed0277c16583830f762.debug debian/libisospec\+\+2/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so.2.1.3 install -d debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/share/doc ln -s libisospec\+\+2 debian/.debhelper/libisospec\+\+2/dbgsym-root/usr/share/doc/libisospec\+\+2-dbgsym chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/81/fca7e689f9c6ebbee676765f9293b2548ccf82.debug chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/81/fca7e689f9c6ebbee676765f9293b2548ccf82.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-39-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/81/fca7e689f9c6ebbee676765f9293b2548ccf82.debug debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-39-i386-linux-gnu.so install -d debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc ln -s python3-isospec debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc/python3-isospec-dbgsym dh_makeshlibs -a rm -f debian/libisospec\+\+-dev/DEBIAN/shlibs rm -f debian/libisospec\+\+2/DEBIAN/shlibs install -d debian/libisospec\+\+2/DEBIAN echo "libIsoSpec++ 2 libisospec++2 (>= 2.1.3)" >> debian/libisospec\+\+2/DEBIAN/shlibs chmod 0644 -- debian/libisospec\+\+2/DEBIAN/shlibs chown 0:0 -- debian/libisospec\+\+2/DEBIAN/shlibs mv debian/.debhelper/generated/libisospec\+\+2/triggers.new debian/.debhelper/generated/libisospec\+\+2/triggers rm -f debian/python3-isospec/DEBIAN/shlibs dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libisospec\+\+2.substvars debian/libisospec\+\+2/usr/lib/i386-linux-gnu/libIsoSpec\+\+.so.2.1.3 install -d debian/python3-isospec/DEBIAN dpkg-shlibdeps -Tdebian/python3-isospec.substvars debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-39-i386-linux-gnu.so dh_installdeb install -d debian/libisospec\+\+-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libisospec\+\+2/triggers debian/libisospec\+\+2/DEBIAN/triggers printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/postinst cat debian/python3-isospec.postinst.debhelper >> debian/python3-isospec/DEBIAN/postinst chmod 0755 -- debian/python3-isospec/DEBIAN/postinst chown 0:0 -- debian/python3-isospec/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/prerm cat debian/python3-isospec.prerm.debhelper >> debian/python3-isospec/DEBIAN/prerm chmod 0755 -- debian/python3-isospec/DEBIAN/prerm chown 0:0 -- debian/python3-isospec/DEBIAN/prerm install -d debian/libisospec\+\+-doc/DEBIAN dh_gencontrol echo misc:Depends= >> debian/libisospec++-dev.substvars echo misc:Pre-Depends= >> debian/libisospec++-dev.substvars dpkg-gencontrol -plibisospec\+\+-dev -ldebian/changelog -Tdebian/libisospec\+\+-dev.substvars -Pdebian/libisospec\+\+-dev echo misc:Depends= >> debian/libisospec++-doc.substvars echo misc:Pre-Depends= >> debian/libisospec++-doc.substvars dpkg-gencontrol -plibisospec\+\+-doc -ldebian/changelog -Tdebian/libisospec\+\+-doc.substvars -Pdebian/libisospec\+\+-doc echo misc:Depends= >> debian/python3-isospec.substvars echo misc:Pre-Depends= >> debian/python3-isospec.substvars install -d debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -Pdebian/.debhelper/python3-isospec/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-isospec-dbgsym "-DDepends=python3-isospec (= \${binary:Version})" "-DDescription=debug symbols for python3-isospec" -DBuild-Ids=81fca7e689f9c6ebbee676765f9293b2548ccf82 -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/libisospec++2.substvars echo misc:Pre-Depends= >> debian/libisospec++2.substvars install -d debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN dpkg-gencontrol -plibisospec\+\+2 -ldebian/changelog -Tdebian/libisospec\+\+2.substvars -Pdebian/.debhelper/libisospec\+\+2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libisospec\+\+2-dbgsym "-DDepends=libisospec++2 (= \${binary:Version})" "-DDescription=debug symbols for libisospec++2" -DBuild-Ids=a752ac81cf403fbe0ac8bed0277c16583830f762 -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/control chown 0:0 -- debian/libisospec\+\+-dev/DEBIAN/control dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibisospec\+\+2 -ldebian/changelog -Tdebian/libisospec\+\+2.substvars -Pdebian/libisospec\+\+2 chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -Pdebian/python3-isospec chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/control chown 0:0 -- debian/libisospec\+\+-doc/DEBIAN/control chmod 0644 -- debian/libisospec\+\+2/DEBIAN/control chown 0:0 -- debian/libisospec\+\+2/DEBIAN/control dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-isospec/DEBIAN/control chown 0:0 -- debian/python3-isospec/DEBIAN/control dh_md5sums cd debian/libisospec++2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-isospec >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+2/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+2/DEBIAN/md5sums chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums chown 0:0 -- debian/python3-isospec/DEBIAN/md5sums cd debian/.debhelper/libisospec++2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+-dev/DEBIAN/md5sums cd debian/.debhelper/python3-isospec/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libisospec\+\+2/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+-doc/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/libisospec\+\+2 .. dpkg-deb --build debian/libisospec\+\+-dev .. dpkg-deb --build debian/.debhelper/libisospec\+\+2/dbgsym-root .. dpkg-deb --build debian/python3-isospec .. dpkg-deb --build debian/libisospec\+\+-doc .. dpkg-deb --build debian/.debhelper/python3-isospec/dbgsym-root .. dpkg-deb: Paket »python3-isospec« wird in »../python3-isospec_2.1.3-1_i386.deb« gebaut. dpkg-deb: Paket »libisospec++2-dbgsym« wird in »../libisospec++2-dbgsym_2.1.3-1_i386.deb« gebaut. dpkg-deb: Paket »libisospec++2« wird in »../libisospec++2_2.1.3-1_i386.deb« gebaut. dpkg-deb: Paket »libisospec++-doc« wird in »../libisospec++-doc_2.1.3-1_all.deb« gebaut. dpkg-deb: Paket »python3-isospec-dbgsym« wird in »../python3-isospec-dbgsym_2.1.3-1_i386.deb« gebaut. dpkg-deb: Paket »libisospec++-dev« wird in »../libisospec++-dev_2.1.3-1_i386.deb« gebaut. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../isospec_2.1.3-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/18589/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/18589/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18589 and its subdirectories I: Current time: Sun Jul 25 00:21:33 +14 2021 I: pbuilder-time-stamp: 1627122093