Wed Apr 26 11:57:31 UTC 2023 I: starting to build python-cutadapt/bookworm/arm64 on jenkins on '2023-04-26 11:57' Wed Apr 26 11:57:31 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_17/26489/console.log Wed Apr 26 11:57:31 UTC 2023 I: Downloading source for bookworm/python-cutadapt=4.2-1 --2023-04-26 11:57:32-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-cutadapt/python-cutadapt_4.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2479 (2.4K) [text/prs.lines.tag] Saving to: ‘python-cutadapt_4.2-1.dsc’ 0K .. 100% 171M=0s 2023-04-26 11:57:32 (171 MB/s) - ‘python-cutadapt_4.2-1.dsc’ saved [2479/2479] Wed Apr 26 11:57:32 UTC 2023 I: python-cutadapt_4.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-cutadapt Binary: python3-cutadapt, cutadapt Architecture: any all Version: 4.2-1 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Kevin Murray , Steffen Moeller , Homepage: https://pypi.python.org/pypi/cutadapt Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-cutadapt Vcs-Git: https://salsa.debian.org/med-team/python-cutadapt.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-pytest, python3-pytest-mock, python3-pytest-timeout Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio, python3-pytest, cython3 Package-List: cutadapt deb science optional arch=all python3-cutadapt deb python optional arch=any Checksums-Sha1: 9f6ebe3b83207f62d214848a934985162331d561 223006 python-cutadapt_4.2.orig.tar.gz 9491cd4b3c20cab4a24751a3ae6393a92a66d71f 8548 python-cutadapt_4.2-1.debian.tar.xz Checksums-Sha256: e33816a58f7d5f5b9922981c48b65f5ddf9ebdf566d0ab75a4418634122d85d6 223006 python-cutadapt_4.2.orig.tar.gz 10e741408a3a9f3ddb04470b0beec80aa7a25f6b05bc7fb1a5282a51ff4135fa 8548 python-cutadapt_4.2-1.debian.tar.xz Files: 4258b60f4d2422dd77ad94351804838f 223006 python-cutadapt_4.2.orig.tar.gz a4dfbb1e9bd52a6142623aa567f220b1 8548 python-cutadapt_4.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOpTlMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHtdw//eNfdFEoIVQRGvotFfM23Z1OVWJLXvLIq k54FHKeUp4+wYTyzbyn/PcRwQT/qhLcWaB68b5fSQucX2ufq7Wu9ErEncTjRrYsJ rr1rrxyosV1gW3PZ3HPktuSy6jZKzeI3UZD+3VDNN/8rHdxmdVspI7Oe5pkbpiDi 7lOOeaauDKj/csLrqpEravk+dcTwXvtmXgkOHRnOQeMhCliwVoSxtgKH1x07/kJx mZvQrWq41HslOhbn9Bu0P4yr4DwU4mHJrNqWud35tt7CnB/kLnyu9DyLdwjEr91u C5C0b9TorDnNucVETDgO4PP8h/1G3faFmOTzPjhg8frcRv+viJkRYXE4xKhxUHUe ZzaYeJhGg8cf1yosA52ehT3SJztZSxt0utLHAjt4kyTtYCO7cnbp8rVcDRl+GAJm U15EFDXeDytnOzBeOa8R7CDnDKn8MCXiUKd79WWoMNfDrjBznUmvPKMY+cAG+JHy 1UR4yQqCN43d9ewXcxS6ue2pnpuBzcwm2NYyih3TK8BZXajTksM8LyVfY5WiKvmW ZgRWY/hfmLf4MyRM/4lswPs7zZ8ZN6Z9zQIUuk47N9YgyfAjYSijUF+5SBq5h1mH GF/5MlExgQku/8IPXC3HmYl+svhyoYfSRHdzSAnJcrN19Kq18jV9zQz67H5TCA9K 5QGCLkcHTGI= =VJ4P -----END PGP SIGNATURE----- Wed Apr 26 11:57:32 UTC 2023 I: Checking whether the package is not for us Wed Apr 26 11:57:32 UTC 2023 I: Starting 1st build on remote node codethink13-arm64.debian.net. Wed Apr 26 11:57:32 UTC 2023 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Wed Apr 26 11:59:56 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 28 06:20:35 -12 2024 I: pbuilder-time-stamp: 1716920435 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cutadapt_4.2-1.dsc] I: copying [./python-cutadapt_4.2.orig.tar.gz] I: copying [./python-cutadapt_4.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 25 19:33:39 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.2-1.dsc: no acceptable signature found dpkg-source: info: extracting python-cutadapt in python-cutadapt-4.2 dpkg-source: info: unpacking python-cutadapt_4.2.orig.tar.gz dpkg-source: info: unpacking python-cutadapt_4.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying xfail_cutadapt_executable_test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/922/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='922' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d06Zz0iP/pbuilderrc_c5Vm --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d06Zz0iP/b1 --logfile b1/build.log python-cutadapt_4.2-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 28 04:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/922/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio, python3-pytest, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however: Package python3-pytest-timeout is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. pbuilder-satisfydepends-dummy depends on python3-dnaio; however: Package python3-dnaio is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pigz{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-dnaio{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-pytest-mock{a} python3-pytest-timeout{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typing-extensions{a} python3-xopen{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 35.3 MB of archives. After unpacking 150 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 pigz arm64 2.6-1 [56.2 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 12 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 cython3 arm64 0.29.32-2+b1 [1223 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1+b1 [9564 B] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libpython3-all-dev arm64 3.11.2-1+b1 [1068 B] Get: 56 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B] Get: 57 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1+b1 [26.2 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 python3-all-dev arm64 3.11.2-1+b1 [1076 B] Get: 60 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 python3-typing-extensions all 4.4.0-1 [45.2 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 python3-xopen all 1.7.0-2 [16.9 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 python3-dnaio arm64 0.10.0-1+b1 [53.6 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 66 http://deb.debian.org/debian bookworm/main arm64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 python3-pytest all 7.2.1-2 [236 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 python3-pytest-mock all 3.8.2-3 [16.5 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 python3-pytest-timeout all 2.1.0-3 [19.4 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools-scm all 7.1.0-3 [42.6 kB] Fetched 35.3 MB in 1s (45.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package pigz. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../archives/pigz_2.6-1_arm64.deb ... Unpacking pigz (2.6-1) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-cutadapt-4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cutadapt_4.2-1_source.changes dpkg-buildpackage: info: source package python-cutadapt dpkg-buildpackage: info: source version 4.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-cutadapt-4.2' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf src/cutadapt.egg-info/ .pytest_cache rm -f src/cutadapt/_version.py rm -rf .eggs # cython-generated files rm -f src/cutadapt/_align.c src/cutadapt/qualtrim.c make[1]: Leaving directory '/build/python-cutadapt-4.2' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/_version.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/utils.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/tokenizer.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/steps.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/statistics.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/report.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/predicates.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/pipeline.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/parser.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/modifiers.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/log.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/json.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/align.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/adapters.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/__main__.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/__init__.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt running egg_info creating src/cutadapt.egg-info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'src/cutadapt/*.c' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' copying src/cutadapt/_align.pyx -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/info.pyx -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/qualtrim.pyx -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt running build_ext cythoning src/cutadapt/_align.pyx to src/cutadapt/_align.c cythoning src/cutadapt/qualtrim.pyx to src/cutadapt/qualtrim.c cythoning src/cutadapt/info.pyx to src/cutadapt/info.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-cutadapt-4.2/src/cutadapt/info.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'cutadapt._align' extension creating build creating build/temp.linux-arm64-cpython-311 creating build/temp.linux-arm64-cpython-311/src creating build/temp.linux-arm64-cpython-311/src/cutadapt aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-cutadapt-4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/cutadapt/_align.c -o build/temp.linux-arm64-cpython-311/src/cutadapt/_align.o In function '__pyx_pf_8cutadapt_6_align_7Aligner_12locate', inlined from '__pyx_pw_8cutadapt_6_align_7Aligner_13locate' at src/cutadapt/_align.c:4505:13: src/cutadapt/_align.c:5504:94: warning: '__pyx_v_origin' may be used uninitialized [-Wmaybe-uninitialized] 5504 | __pyx_t_13 = ((__pyx_v_origin <= (__pyx_v_best.origin + __Pyx_div_long(__pyx_v_m, 2))) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ src/cutadapt/_align.c: In function '__pyx_pw_8cutadapt_6_align_7Aligner_13locate': src/cutadapt/_align.c:4536:7: note: '__pyx_v_origin' was declared here 4536 | int __pyx_v_origin; | ^~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cutadapt-4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/src/cutadapt/_align.o -L/usr/lib/aarch64-linux-gnu -o /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/_align.cpython-311-aarch64-linux-gnu.so building 'cutadapt.qualtrim' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-cutadapt-4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/cutadapt/qualtrim.c -o build/temp.linux-arm64-cpython-311/src/cutadapt/qualtrim.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cutadapt-4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/src/cutadapt/qualtrim.o -L/usr/lib/aarch64-linux-gnu -o /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/qualtrim.cpython-311-aarch64-linux-gnu.so building 'cutadapt.info' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-cutadapt-4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/cutadapt/info.c -o build/temp.linux-arm64-cpython-311/src/cutadapt/info.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-cutadapt-4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/src/cutadapt/info.o -L/usr/lib/aarch64-linux-gnu -o /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/info.cpython-311-aarch64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-cutadapt-4.2' dh_auto_test -- --test-pytest I: pybuild base:240: cd /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/python-cutadapt-4.2, configfile: pyproject.toml plugins: timeout-2.1.0, mock-3.8.2 collected 566 items tests/test_adapters.py ..................................... [ 6%] tests/test_align.py ................................................ [ 15%] tests/test_api.py ... [ 15%] tests/test_command.py s.......... [ 17%] tests/test_commandline.py .............................................. [ 25%] ........................................................................ [ 38%] .......................................................... [ 48%] tests/test_main.py .... [ 49%] tests/test_modifiers.py .................................... [ 55%] tests/test_paired.py ................................................... [ 64%] ........................................................................ [ 77%] .................................................. [ 86%] tests/test_parser.py ................................................ [ 94%] tests/test_predicates.py ............ [ 96%] tests/test_qualtrim.py .. [ 97%] tests/test_report.py .. [ 97%] tests/test_stats.py ... [ 98%] tests/test_testutils.py .. [ 98%] tests/test_tokenizer.py .. [ 98%] tests/test_trim.py ... [ 99%] tests/test_utils.py .... [100%] ======================= 565 passed, 1 skipped in 19.28s ======================== make[1]: Leaving directory '/build/python-cutadapt-4.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-cutadapt-4.2/debian/python3-cutadapt running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying src/cutadapt/_version.py -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt running egg_info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' copying src/cutadapt/_align.c -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/info.c -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt copying src/cutadapt/qualtrim.c -> /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt running build_ext skipping 'src/cutadapt/_align.c' Cython extension (up-to-date) skipping 'src/cutadapt/qualtrim.c' Cython extension (up-to-date) skipping 'src/cutadapt/info.c' Cython extension (up-to-date) running install_lib creating /build/python-cutadapt-4.2/debian/python3-cutadapt creating /build/python-cutadapt-4.2/debian/python3-cutadapt/usr creating /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib creating /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11 creating /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages creating /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/qualtrim.c -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/info.c -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/_align.c -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/_version.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt creating /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/log.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/utils.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/pipeline.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/predicates.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/steps.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/statistics.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/report.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/tokenizer.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/modifiers.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/parser.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/json.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/align.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/adapters.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/__main__.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/_version.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__pycache__/__init__.cpython-311.pyc -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__pycache__ copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/info.cpython-311-aarch64-linux-gnu.so -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/qualtrim.cpython-311-aarch64-linux-gnu.so -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/_align.cpython-311-aarch64-linux-gnu.so -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/qualtrim.pyx -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/info.pyx -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/_align.pyx -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__init__.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/__main__.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/adapters.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/align.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/json.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/log.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/modifiers.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/parser.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/pipeline.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/predicates.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/report.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/statistics.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/steps.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/tokenizer.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt copying /build/python-cutadapt-4.2/.pybuild/cpython3_3.11_cutadapt/build/cutadapt/utils.py -> /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/_version.py to _version.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/__main__.py to __main__.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/adapters.py to adapters.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/align.py to align.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/json.py to json.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/log.py to log.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/modifiers.py to modifiers.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/parser.py to parser.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/pipeline.py to pipeline.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/predicates.py to predicates.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/report.py to report.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/statistics.py to statistics.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/steps.py to steps.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/tokenizer.py to tokenizer.cpython-311.pyc byte-compiling /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt/utils.py to utils.cpython-311.pyc running install_egg_info Copying src/cutadapt.egg-info to /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/lib/python3.11/dist-packages/cutadapt-4.2.egg-info Skipping SOURCES.txt running install_scripts Installing cutadapt script to /build/python-cutadapt-4.2/debian/python3-cutadapt/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/python-cutadapt-4.2' dh_install mkdir -p debian/cutadapt/usr/bin mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/ make[1]: Leaving directory '/build/python-cutadapt-4.2' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package cutadapt: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_4.2-1_arm64.deb'. dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_4.2-1_arm64.deb'. dpkg-deb: building package 'cutadapt' in '../cutadapt_4.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cutadapt_4.2-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cutadapt_4.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/922 and its subdirectories I: Current time: Tue May 28 06:22:54 -12 2024 I: pbuilder-time-stamp: 1716920574 Wed Apr 26 11:59:57 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Wed Apr 26 11:59:57 UTC 2023 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Wed Apr 26 12:02:36 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Wed Apr 26 12:02:36 UTC 2023 I: python-cutadapt_4.2-1_arm64.changes: Format: 1.8 Date: Mon, 26 Dec 2022 08:30:16 +0100 Source: python-cutadapt Binary: cutadapt python3-cutadapt python3-cutadapt-dbgsym Architecture: all arm64 Version: 4.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cutadapt - Clean biological sequences from high-throughput sequencing reads Changes: python-cutadapt (4.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: b07266e6529cd4fee307a42a858829f22687fb69 23520 cutadapt_4.2-1_all.deb 9319fd2887bfb6020199760a9ca69336460ee5e3 6908 python-cutadapt_4.2-1_arm64.buildinfo b91307f25732d2ef5ca9cba632c7af5df7e3b875 413540 python3-cutadapt-dbgsym_4.2-1_arm64.deb 5562c5235e278a437da0d67767d4d02325db7fe6 215388 python3-cutadapt_4.2-1_arm64.deb Checksums-Sha256: 0856db95f4b36033c60ebdf6deae8e4c88e75def1e38c6fd0eb66d443f1a90c5 23520 cutadapt_4.2-1_all.deb c3827e2be7fbf067cf7a2b9417cf3bb84c02b490f7c2d9f886ed15ab0f23055d 6908 python-cutadapt_4.2-1_arm64.buildinfo e3833cb88564bd6837a4789c50e015603d5c9a81c6012fe013dbd53b5c63fdb9 413540 python3-cutadapt-dbgsym_4.2-1_arm64.deb d84bb1741a4a7137072ff0a5b3e838834e641c742f86a318557def8ad9b7de14 215388 python3-cutadapt_4.2-1_arm64.deb Files: 1a9e7ab18ecc6d4b01ea633fbfe326b7 23520 science optional cutadapt_4.2-1_all.deb 96e5086c385c1e7ad15c3a6c4d5bbf3f 6908 python optional python-cutadapt_4.2-1_arm64.buildinfo a5617c830e5a8a9a9f08e4206f43773d 413540 debug optional python3-cutadapt-dbgsym_4.2-1_arm64.deb 9927434da7f6676836886e174b0355e6 215388 python optional python3-cutadapt_4.2-1_arm64.deb Wed Apr 26 12:02:37 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.d06Zz0iP/python-cutadapt_4.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.d06Zz0iP/python-cutadapt_4.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.d06Zz0iP/python-cutadapt_4.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.d06Zz0iP/b1/python-cutadapt_4.2-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.d06Zz0iP/b2/python-cutadapt_4.2-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.605s) 0.605s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Wed Apr 26 12:02:39 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 26 12:02:39 UTC 2023 I: python-cutadapt from bookworm built successfully and reproducibly on arm64. Wed Apr 26 12:02:40 UTC 2023 I: Submitting .buildinfo files to external archives: Wed Apr 26 12:02:40 UTC 2023 I: Submitting 8.0K b1/python-cutadapt_4.2-1_arm64.buildinfo.asc Wed Apr 26 12:02:42 UTC 2023 I: Submitting 8.0K b2/python-cutadapt_4.2-1_arm64.buildinfo.asc Wed Apr 26 12:02:42 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 26 12:02:42 UTC 2023 I: Done submitting .buildinfo files. Wed Apr 26 12:02:42 UTC 2023 I: Removing signed python-cutadapt_4.2-1_arm64.buildinfo.asc files: removed './b1/python-cutadapt_4.2-1_arm64.buildinfo.asc' removed './b2/python-cutadapt_4.2-1_arm64.buildinfo.asc'