Sat Jul 24 17:20:38 UTC 2021 I: starting to build votca-csg/bullseye/armhf on jenkins on '2021-07-24 17:20' Sat Jul 24 17:20:38 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_35/4185/console.log Sat Jul 24 17:20:38 UTC 2021 I: Downloading source for bullseye/votca-csg=1.6.4-1 --2021-07-24 17:20:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/v/votca-csg/votca-csg_1.6.4-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2829 (2.8K) Saving to: ‘votca-csg_1.6.4-1.dsc’ 0K .. 100% 220M=0s 2021-07-24 17:20:38 (220 MB/s) - ‘votca-csg_1.6.4-1.dsc’ saved [2829/2829] Sat Jul 24 17:20:38 UTC 2021 I: votca-csg_1.6.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: votca-csg Binary: libvotca-csg-dev, libvotca-csg6, votca-csg-scripts, votca-csg-tutorials, votca-csg Architecture: any all Version: 1.6.4-1 Maintainer: Debichem Team Uploaders: Christoph Junghans , Michael Banck , Nicholas Breen Homepage: http://www.votca.org Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/debichem-team/votca-csg Vcs-Git: https://salsa.debian.org/debichem-team/votca-csg.git Build-Depends: bash-completion, cmake, debhelper-compat (= 13), dh-python, libboost-filesystem-dev, libboost-program-options-dev, libboost-system-dev, libeigen3-dev, libgromacs-dev (>= 2020-2), libgsl-dev, libsqlite3-dev, libvotca-tools-dev (<= 1.7~), libvotca-tools-dev (>= 1.6.4), pkg-config, python3:any, txt2tags Package-List: libvotca-csg-dev deb libdevel optional arch=any libvotca-csg6 deb libs optional arch=any votca-csg deb science optional arch=any votca-csg-scripts deb science optional arch=all votca-csg-tutorials deb science optional arch=all Checksums-Sha1: 86f2d84c9c81ab31453bf5d9cac7e7d7d1a82d6b 5944389 votca-csg_1.6.4.orig-tutorials.tar.gz 6783371701064c7de1f9f8fcb392ba6648754957 537966 votca-csg_1.6.4.orig.tar.gz bfcfa5ab07aacb25efd94167da21a89957af6987 5132 votca-csg_1.6.4-1.debian.tar.xz Checksums-Sha256: 34eae1da3309591bb01b003dca1e830bdfa3a3dd59de015fb394e71a1cba6f06 5944389 votca-csg_1.6.4.orig-tutorials.tar.gz 8ca58d91c2578b05ffcd8fb47f19d0c34895c44fe49affe842a7c9d2e853fe83 537966 votca-csg_1.6.4.orig.tar.gz 5e94c1766dd4359402eba1dabb3d9e099f6e7892a13aef9835873f294c9dad99 5132 votca-csg_1.6.4-1.debian.tar.xz Files: 009adb50bac2e868c3d39c24fc09e232 5944389 votca-csg_1.6.4.orig-tutorials.tar.gz 8f9360abad16d283c49a75283e833a3c 537966 votca-csg_1.6.4.orig.tar.gz 0e2603d949c9fde145f8c42012a1b6f2 5132 votca-csg_1.6.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCAAwFiEEhD5fph5gYziYdtLl7kr9aexlEI8FAmAUPsYSHG5icmVlbkBk ZWJpYW4ub3JnAAoJEO5K/WnsZRCPKREQAKY/x9+Bt1X690KVQS0T11/amnqEqyre wKspIHgxERFYhOb7yKj31r+FpOosOZAbBnDTtdM2ov8eNHPQZYXth30YGPZhaUb9 hYGE5hOpU/tIHCjd4spM+baBRNEdvaOFBDBD7O9kjWrmlis9JbCTj8SggmA4cmMd /x6FzeGCrpHgCaAaOm86V+jhgtx1ej0Du9jhLs7Y7C52vKmvkFjTSRVZzcqAcL1W 7QfkORU9b1mmDKI2/DMCB20jCnj35plgxj8EuopKmCS/xUzFsvXPuVvMIU+ry39d nwm2hGWwau3tN7cFlfe43SITGvQEt9CtooAb5h5Q3yY+mz7XC017zinzr2cq0mWb 0c1xDwj6W4Nxbz4LEoaSrg/of8BNgk1LbIr6yYHJGaFb9kQlw1s7rr02ptwhKGQ5 ZY8fYRiv0FvfocOefxL97/+ukMR8urvRsWp/mCZmYd53oHAM1vH0Tw/MrgXcEbmI XmUG7soZEmBnvvaDzdpXAruxULatPeDH0zg6uKTBsCpBa8b5kUqJkEOR6iAX3Zfu WNXHsRj3FPVooB5dBVXG13qNVkc9t8cmD2T1UwE8NOWlX9EQXfkHVaWBvOOaMy+P tA0IHN5hFmHCLjGybNTCdBeUXzv7DUCNpjGopoF+KxZpgwDqDavEbgOcvjwlOcUW AhTKRYEpg1w1 =LTPR -----END PGP SIGNATURE----- Sat Jul 24 17:20:38 UTC 2021 I: Checking whether the package is not for us Sat Jul 24 17:20:38 UTC 2021 I: Starting 1st build on remote node jtx1c-armhf-rb.debian.net. Sat Jul 24 17:20:38 UTC 2021 I: Preparing to do remote build '1' on jtx1c-armhf-rb.debian.net. Sat Jul 24 17:36:22 UTC 2021 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 24 05:20:47 -12 2021 I: pbuilder-time-stamp: 1627147247 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [votca-csg_1.6.4-1.dsc] I: copying [./votca-csg_1.6.4.orig-tutorials.tar.gz] I: copying [./votca-csg_1.6.4.orig.tar.gz] I: copying [./votca-csg_1.6.4-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ezwYKad9/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 29 04:58:46 2021 -12 gpgv: using RSA key 843E5FA61E6063389876D2E5EE4AFD69EC65108F gpgv: issuer "nbreen@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./votca-csg_1.6.4-1.dsc dpkg-source: info: extracting votca-csg in votca-csg-1.6.4 dpkg-source: info: unpacking votca-csg_1.6.4.orig.tar.gz dpkg-source: info: unpacking votca-csg_1.6.4.orig-tutorials.tar.gz dpkg-source: info: unpacking votca-csg_1.6.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19292/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='b122723dd1c94450befa2d02613be650' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19292' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/pbuilderrc_elTM --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/b1 --logfile b1/build.log votca-csg_1.6.4-1.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux jtx1c 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 23 21:26 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/19292/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bash-completion, cmake, debhelper-compat (= 13), dh-python, libboost-filesystem-dev, libboost-program-options-dev, libboost-system-dev, libeigen3-dev, libgromacs-dev (>= 2020-2), libgsl-dev, libsqlite3-dev, libvotca-tools-dev (<= 1.7~), libvotca-tools-dev (>= 1.6.4), pkg-config, python3:any, txt2tags dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgromacs-dev (>= 2020-2); however: Package libgromacs-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libvotca-tools-dev (<= 1.7~); however: Package libvotca-tools-dev is not installed. pbuilder-satisfydepends-dummy depends on libvotca-tools-dev (>= 1.6.4); however: Package libvotca-tools-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3:any. pbuilder-satisfydepends-dummy depends on txt2tags; however: Package txt2tags is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas3{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libeigen3-dev{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgromacs-dev{a} libgromacs5{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libhwloc15{a} libicu67{a} libjsoncpp24{a} liblapack3{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsqlite3-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libvotca-tools-dev{a} libvotca-tools6{a} libxml2{a} m4{a} man-db{a} media-types{a} pkg-config{a} po-debconf{a} procps{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} txt2tags{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gromacs-data libarchive-cpio-perl libglib2.0-data libgpm2 libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 60.5 MB of archives. After unpacking 320 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf bash-completion all 1:2.11-2 [234 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf cmake-data all 3.18.4-2 [1725 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libarchive13 armhf 3.4.3-2+b1 [304 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+b1 [310 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf libjsoncpp24 armhf 1.9.4-4 [68.5 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf librhash0 armhf 1.4.1-2 [144 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf libuv1 armhf 1.40.0-2 [120 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf cmake armhf 3.18.4-2 [3534 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74.0 armhf 1.74.0-9 [275 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74.0 armhf 1.74.0-9 [242 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74-dev armhf 1.74.0-9 [243 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74-dev armhf 1.74.0-9 [289 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem-dev armhf 1.74.0.3 [4368 B] Get: 73 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74.0 armhf 1.74.0-9 [339 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74-dev armhf 1.74.0-9 [384 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libboost-program-options-dev armhf 1.74.0.3 [4340 B] Get: 76 http://deb.debian.org/debian bullseye/main armhf libboost-system-dev armhf 1.74.0.3 [4468 B] Get: 77 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf pkg-config armhf 0.29.2-1 [62.4 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libeigen3-dev all 3.3.9-2 [858 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libexpat1-dev armhf 2.2.10-2 [123 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libfftw3-double3 armhf 3.3.8-2 [432 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf libfftw3-single3 armhf 3.3.8-2 [715 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libfftw3-bin armhf 3.3.8-2 [43.5 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf libfftw3-dev armhf 3.3.8-2 [1141 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libhwloc15 armhf 2.4.1+dfsg-1 [125 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libgromacs5 armhf 2020.6-2 [7941 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libgromacs-dev armhf 2020.6-2 [187 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libgslcblas0 armhf 2.6+dfsg-2 [80.0 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf libgsl25 armhf 2.6+dfsg-2 [769 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf libgsl-dev armhf 2.6+dfsg-2 [963 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf libsqlite3-dev armhf 3.34.1-3 [890 kB] Get: 94 http://deb.debian.org/debian bullseye/main armhf libvotca-tools6 armhf 1.6.4-1 [224 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf libvotca-tools-dev armhf 1.6.4-1 [40.0 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf txt2tags all 3.4-2 [121 kB] Fetched 60.5 MB in 13s (4735 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20265 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:armhf. 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Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20686 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../01-libncurses6_6.2+20201114-2_armhf.deb ... Unpacking libncurses6:armhf (6.2+20201114-2) ... Selecting previously unselected package libprocps8:armhf. 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Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../10-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. 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Preparing to unpack .../21-libsasl2-modules-db_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../22-libsasl2-2_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../23-libldap-2.4-2_2.4.57+dfsg-3_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../24-libnghttp2-14_1.43.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.43.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../25-libpsl5_0.21.0-1.2_armhf.deb ... Unpacking libpsl5:armhf (0.21.0-1.2) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../27-libssh2-1_1.9.0-2_armhf.deb ... Unpacking libssh2-1:armhf (1.9.0-2) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../28-libcurl4_7.74.0-1.3+b1_armhf.deb ... Unpacking libcurl4:armhf (7.74.0-1.3+b1) ... Selecting previously unselected package libjsoncpp24:armhf. Preparing to unpack .../29-libjsoncpp24_1.9.4-4_armhf.deb ... Unpacking libjsoncpp24:armhf (1.9.4-4) ... Selecting previously unselected package librhash0:armhf. Preparing to unpack .../30-librhash0_1.4.1-2_armhf.deb ... Unpacking librhash0:armhf (1.4.1-2) ... Selecting previously unselected package libuv1:armhf. Preparing to unpack .../31-libuv1_1.40.0-2_armhf.deb ... Unpacking libuv1:armhf (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../32-cmake_3.18.4-2_armhf.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../33-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../34-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../35-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../36-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../37-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../38-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../39-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../40-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../41-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../42-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../43-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../44-po-debconf_1.0.21+nmu1_all.deb ... 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Selecting previously unselected package libboost-filesystem1.74.0:armhf. Preparing to unpack .../51-libboost-filesystem1.74.0_1.74.0-9_armhf.deb ... Unpacking libboost-filesystem1.74.0:armhf (1.74.0-9) ... Selecting previously unselected package libboost-system1.74.0:armhf. Preparing to unpack .../52-libboost-system1.74.0_1.74.0-9_armhf.deb ... Unpacking libboost-system1.74.0:armhf (1.74.0-9) ... Selecting previously unselected package libboost-system1.74-dev:armhf. Preparing to unpack .../53-libboost-system1.74-dev_1.74.0-9_armhf.deb ... Unpacking libboost-system1.74-dev:armhf (1.74.0-9) ... Selecting previously unselected package libboost-filesystem1.74-dev:armhf. Preparing to unpack .../54-libboost-filesystem1.74-dev_1.74.0-9_armhf.deb ... Unpacking libboost-filesystem1.74-dev:armhf (1.74.0-9) ... Selecting previously unselected package libboost-filesystem-dev:armhf. Preparing to unpack .../55-libboost-filesystem-dev_1.74.0.3_armhf.deb ... Unpacking libboost-filesystem-dev:armhf (1.74.0.3) ... Selecting previously unselected package libboost-program-options1.74.0:armhf. Preparing to unpack .../56-libboost-program-options1.74.0_1.74.0-9_armhf.deb ... Unpacking libboost-program-options1.74.0:armhf (1.74.0-9) ... Selecting previously unselected package libboost-program-options1.74-dev:armhf. Preparing to unpack .../57-libboost-program-options1.74-dev_1.74.0-9_armhf.deb ... Unpacking libboost-program-options1.74-dev:armhf (1.74.0-9) ... Selecting previously unselected package libboost-program-options-dev:armhf. Preparing to unpack .../58-libboost-program-options-dev_1.74.0.3_armhf.deb ... Unpacking libboost-program-options-dev:armhf (1.74.0.3) ... Selecting previously unselected package libboost-system-dev:armhf. Preparing to unpack .../59-libboost-system-dev_1.74.0.3_armhf.deb ... Unpacking libboost-system-dev:armhf (1.74.0.3) ... Selecting previously unselected package libglib2.0-0:armhf. 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Preparing to unpack .../72-libgromacs-dev_2020.6-2_armhf.deb ... Unpacking libgromacs-dev (2020.6-2) ... Selecting previously unselected package libgslcblas0:armhf. Preparing to unpack .../73-libgslcblas0_2.6+dfsg-2_armhf.deb ... Unpacking libgslcblas0:armhf (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:armhf. Preparing to unpack .../74-libgsl25_2.6+dfsg-2_armhf.deb ... Unpacking libgsl25:armhf (2.6+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../75-libgsl-dev_2.6+dfsg-2_armhf.deb ... Unpacking libgsl-dev (2.6+dfsg-2) ... Selecting previously unselected package libsqlite3-dev:armhf. Preparing to unpack .../76-libsqlite3-dev_3.34.1-3_armhf.deb ... Unpacking libsqlite3-dev:armhf (3.34.1-3) ... Selecting previously unselected package libvotca-tools6:armhf. Preparing to unpack .../77-libvotca-tools6_1.6.4-1_armhf.deb ... Unpacking libvotca-tools6:armhf (1.6.4-1) ... Selecting previously unselected package libvotca-tools-dev:armhf. Preparing to unpack .../78-libvotca-tools-dev_1.6.4-1_armhf.deb ... Unpacking libvotca-tools-dev:armhf (1.6.4-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../79-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package txt2tags. Preparing to unpack .../80-txt2tags_3.4-2_all.deb ... Unpacking txt2tags (3.4-2) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:armhf (1.5.3-1) ... Setting up libboost-system1.74.0:armhf (1.74.0-9) ... Setting up libpsl5:armhf (0.21.0-1.2) ... Setting up libboost1.74-dev:armhf (1.74.0-9) ... Setting up libfftw3-single3:armhf (3.3.8-2) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-7) ... Setting up libgslcblas0:armhf (2.6+dfsg-2) ... 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Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libvotca-tools-dev:armhf (1.6.4-1) ... Setting up libeigen3-dev (3.3.9-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:armhf (7.74.0-1.3+b1) ... Setting up libfftw3-dev:armhf (3.3.8-2) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up libgromacs5:armhf (2020.6-2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libgromacs-dev (2020.6-2) ... Setting up cmake (3.18.4-2) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up txt2tags (3.4-2) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/votca-csg-1.6.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../votca-csg_1.6.4-1_source.changes dpkg-buildpackage: info: source package votca-csg dpkg-buildpackage: info: source version 1.6.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nicholas Breen dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with bash-completion,python3 dh_clean debian/rules binary dh binary --with bash-completion,python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/votca-csg-1.6.4' dh_auto_configure -- -DLIB=lib/arm-linux-gnueabihf cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DLIB=lib/arm-linux-gnueabihf .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found TXT2TAGS: /usr/bin/txt2tags -- Found UnixCommands: /bin/bash -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.53.0") found components: program_options filesystem system -- Found Eigen3: /usr/share/eigen3/cmake -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.53.0") found components: program_options -- Found VOTCA_TOOLS: /usr/lib/arm-linux-gnueabihf/cmake/VOTCA_TOOLS -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'libgromacs_d' -- Found libgromacs_d, version 2020.6-Debian-2020.6-2 -- Checking for module 'libgromacs' -- Found libgromacs, version 2020.6-Debian-2020.6-2 -- Looking for c++ gmx_version in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for c++ gmx_version in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so - found -- Looking for c++ gmx_is_single_precision in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for c++ gmx_is_single_precision in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so - not found -- Looking for c++ gmx_is_double_precision in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for c++ gmx_is_double_precision in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so - found -- Found GROMACS: /usr/lib/arm-linux-gnueabihf/libgromacs_d.so (found suitable version "2020.6", minimum required is "2018") CMake Warning at CMakeLists.txt:81 (message): Gromacs-2020 and above have no support for tabulated interactions, that are needed for coarse-graining (see and comment on https://gitlab.com/gromacs/gromacs/-/issues/1347) -- Could NOT find GMX (missing: GMX_EXECUTABLE) -- Looking for assert.h -- Looking for assert.h - found -- Looking for C++ include algorithm -- Looking for C++ include algorithm - found -- Looking for C++ include fstream -- Looking for C++ include fstream - found -- Looking for C++ include iomanip -- Looking for C++ include iomanip - found -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Looking for C++ include list -- Looking for C++ include list - found -- Looking for C++ include map -- Looking for C++ include map - found -- Looking for C++ include numeric -- Looking for C++ include numeric - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for C++ include stdexcept -- Looking for C++ include stdexcept - found -- Looking for C++ include string -- Looking for C++ include string - found -- Looking for C++ include vector -- Looking for C++ include vector - found -- Looking for C++ include cstdlib -- Looking for C++ include cstdlib - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (found version "") -- Could NOT find LMP (missing: LMP_EXECUTABLE) -- The following OPTIONAL packages have been found: * TXT2TAGS * UnixCommands * PkgConfig -- The following REQUIRED packages have been found: * Threads * boost_filesystem (required version == 1.74.0) * boost_system (required version == 1.74.0) * Eigen3 * boost_headers (required version == 1.74.0) * boost_program_options (required version == 1.74.0) * Boost (required version >= 1.53.0) * VOTCA_TOOLS * GROMACS (required version >= 2018) -- The following OPTIONAL packages have not been found: * HDF5 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/votca-csg-1.6.4' dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/votca-csg-1.6.4 -B/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/CMakeFiles /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/share/man /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/DependInfo.cmake --color= make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/DependInfo.cmake --color= make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/libcsg /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/gitversion-csg.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/depend.internal". Scanning dependencies of target votca-csg_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/gitversion-csg.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/gitversion-csg.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/gitversion-csg.dir/depend.internal". Scanning dependencies of target gitversion-csg make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/build Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/depend.internal". make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/cmake -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -DGIT_EXECUTABLE="" -P /build/votca-csg-1.6.4/CMakeModules/gitversion.cmake Scanning dependencies of target help2t2t_build [ 1%] Building votca-csg manpage cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man && /usr/bin/txt2tags -q -t man -i /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/votca-csg.t2t -o /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/man/votca-csg.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 2%] Generating help2t2t, ALL cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="help2t2t.out" -DOUTPUT="help2t2t" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 2%] Built target gitversion-csg make -f scripts/CMakeFiles/csg_call_build.dir/build.make scripts/CMakeFiles/csg_call_build.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_build.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_build.dir/depend.internal". Scanning dependencies of target csg_call_build make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/csg_call_build.dir/build.make scripts/CMakeFiles/csg_call_build.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 2%] Built target help2t2t_build make -f scripts/CMakeFiles/csg_inverse_build.dir/build.make scripts/CMakeFiles/csg_inverse_build.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_build.dir/depend.internal". Scanning dependencies of target csg_inverse_build [ 3%] Generating csg_call make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/csg_inverse_build.dir/build.make scripts/CMakeFiles/csg_inverse_build.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="csg_call.out" -DOUTPUT="csg_call" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake [ 4%] Generating csg_inverse cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="csg_inverse.out" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-1.6.4" -P /build/votca-csg-1.6.4/CMakeModules/gitscript.cmake make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 4%] Built target csg_call_build make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/libcsg /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/depend.internal". [ 4%] Built target csg_inverse_build make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_manpage.dir/depend.internal". Scanning dependencies of target csg_inverse_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 5%] Generating csg_inverse.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-1.6.4/share /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/csg_inverse --help > csg_inverse.help [ 5%] Built target votca-csg_manpage make -f scripts/CMakeFiles/csg_call_manpage.dir/build.make scripts/CMakeFiles/csg_call_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_manpage.dir/depend.internal". Scanning dependencies of target csg_call_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/csg_call_manpage.dir/build.make scripts/CMakeFiles/csg_call_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/help2t2t csg_inverse.help > csg_inverse.t2t [ 6%] Generating csg_call.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-1.6.4/share /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/csg_call --help > csg_call.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts/help2t2t csg_call.help > csg_call.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/txt2tags -q -t man -i csg_inverse.t2t -o csg_inverse.man Scanning dependencies of target votca_csg make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/scripts && /usr/bin/txt2tags -q -t man -i csg_call.t2t -o csg_call.man [ 7%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadlist.cc.o -c /build/votca-csg-1.6.4/src/libcsg/beadlist.cc make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 8%] Built target csg_inverse_manpage [ 9%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadmotif.cc.o -c /build/votca-csg-1.6.4/src/libcsg/beadmotif.cc make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 10%] Built target csg_call_manpage [ 11%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o -c /build/votca-csg-1.6.4/src/libcsg/beadmotifalgorithms.cc [ 12%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o -c /build/votca-csg-1.6.4/src/libcsg/beadmotifconnector.cc [ 13%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o -c /build/votca-csg-1.6.4/src/libcsg/beadstructurealgorithms.cc [ 14%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/boundarycondition.cc.o -c /build/votca-csg-1.6.4/src/libcsg/boundarycondition.cc [ 15%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/cgengine.cc.o -c /build/votca-csg-1.6.4/src/libcsg/cgengine.cc [ 16%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -c /build/votca-csg-1.6.4/src/libcsg/cgmoleculedef.cc [ 17%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/csgapplication.cc.o -c /build/votca-csg-1.6.4/src/libcsg/csgapplication.cc [ 18%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/exclusionlist.cc.o -c /build/votca-csg-1.6.4/src/libcsg/exclusionlist.cc [ 19%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/imcio.cc.o -c /build/votca-csg-1.6.4/src/libcsg/imcio.cc [ 20%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/map.cc.o -c /build/votca-csg-1.6.4/src/libcsg/map.cc [ 21%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/molecule.cc.o -c /build/votca-csg-1.6.4/src/libcsg/molecule.cc In file included from /usr/include/c++/10/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/sign.hpp:17, from /usr/include/boost/lexical_cast/detail/inf_nan.hpp:34, from /usr/include/boost/lexical_cast/detail/converter_lexical_streams.hpp:63, from /usr/include/boost/lexical_cast/detail/converter_lexical.hpp:54, from /usr/include/boost/lexical_cast/try_lexical_convert.hpp:44, from /usr/include/boost/lexical_cast.hpp:32, from /build/votca-csg-1.6.4/src/libcsg/imcio.cc:19: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In function 'Eigen::MatrixXd votca::csg::imcio_read_matrix(const string&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 22%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblist.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblist.cc [ 23%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblist_3body.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblist_3body.cc In file included from /usr/include/c++/10/vector:72, from /usr/include/eigen3/Eigen/SparseCore:15, from /usr/include/eigen3/Eigen/Sparse:26, from /usr/include/eigen3/Eigen/Eigen:2, from /usr/include/votca/tools/eigen.h:50, from /usr/include/votca/tools/property.h:21, from /build/votca-csg-1.6.4/include/votca/csg/bead.h:24, from /build/votca-csg-1.6.4/src/libcsg/map.cc:20: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const votca::csg::Map_Sphere::element_t&}; _Tp = votca::csg::Map_Sphere::element_t; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/include/eigen3/Eigen/SparseCore:15, from /usr/include/eigen3/Eigen/Sparse:26, from /usr/include/eigen3/Eigen/Eigen:2, from /usr/include/votca/tools/eigen.h:50, from /usr/include/votca/tools/property.h:21, from /build/votca-csg-1.6.4/include/votca/csg/bead.h:24, from /build/votca-csg-1.6.4/src/libcsg/map.cc:20: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void votca::csg::Map_Sphere::Initialize(votca::csg::Molecule*, votca::csg::Bead*, votca::tools::Property*, votca::tools::Property*)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 24%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblistgrid.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblistgrid.cc [ 25%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nblistgrid_3body.cc [ 26%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nematicorder.cc.o -c /build/votca-csg-1.6.4/src/libcsg/nematicorder.cc [ 27%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/openbox.cc.o -c /build/votca-csg-1.6.4/src/libcsg/openbox.cc [ 28%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -c /build/votca-csg-1.6.4/src/libcsg/orthorhombicbox.cc [ 29%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o -c /build/votca-csg-1.6.4/src/libcsg/potentialfunctions/potentialfunction.cc [ 30%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o -c /build/votca-csg-1.6.4/src/libcsg/potentialfunctions/potentialfunctioncbspl.cc [ 31%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o -c /build/votca-csg-1.6.4/src/libcsg/potentialfunctions/potentialfunctionlj126.cc [ 32%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o -c /build/votca-csg-1.6.4/src/libcsg/potentialfunctions/potentialfunctionljg.cc [ 33%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/topology.cc.o -c /build/votca-csg-1.6.4/src/libcsg/topology.cc [ 34%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/topologymap.cc.o -c /build/votca-csg-1.6.4/src/libcsg/topologymap.cc [ 35%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/topologyreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/topologyreader.cc [ 36%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS 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CMakeFiles/votca_csg.dir/trajectorywriter.cc.o -c /build/votca-csg-1.6.4/src/libcsg/trajectorywriter.cc [ 38%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/triclinicbox.cc.o -c /build/votca-csg-1.6.4/src/libcsg/triclinicbox.cc [ 39%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/version.cc.o -c /build/votca-csg-1.6.4/src/libcsg/version.cc /build/votca-csg-1.6.4/src/libcsg/version.cc:36:54: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 36 | " (compiled " __DATE__ ", " __TIME__ ")"; | ^~~~~~~~ /build/votca-csg-1.6.4/src/libcsg/version.cc:36:68: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 36 | " (compiled " __DATE__ ", " __TIME__ ")"; | ^~~~~~~~ [ 40%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/dlpolytopologyreader.cc [ 41%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/dlpolytrajectoryreader.cc [ 42%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/dlpolytrajectorywriter.cc [ 43%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/groreader.cc [ 44%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc [ 45%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdatareader.cc /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc: In member function 'virtual void votca::csg::GROWriter::Write(votca::csg::Topology*)': /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:39:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 39 | fprintf(_out, "%5ld\n", top->BeadCount()); | ~~~^ ~~~~~~~~~~~~~~~~ | | | | long int votca::Index {aka int} | %5d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:18: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ ~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:22: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:28: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:32: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:38: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:42: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:48: warning: format '%ld' expects argument of type 'long int', but argument 9 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:52: warning: format '%ld' expects argument of type 'long int', but argument 10 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:58: warning: format '%ld' expects argument of type 'long int', but argument 11 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:62: warning: format '%ld' expects argument of type 'long int', but argument 12 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:68: warning: format '%ld' expects argument of type 'long int', but argument 13 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:51:72: warning: format '%ld' expects argument of type 'long int', but argument 14 has type 'votca::Index' {aka 'int'} [-Wformat=] 51 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, | ~~^ | | | long int | %d 52 | pr, l, pr, l, pr, l, vpr, l, vpr, l, vpr); | ~~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:54:26: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 54 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:54:30: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'votca::Index' {aka 'int'} [-Wformat=] 54 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:54:36: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'votca::Index' {aka 'int'} [-Wformat=] 54 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:54:40: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'votca::Index' {aka 'int'} [-Wformat=] 54 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:54:46: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'votca::Index' {aka 'int'} [-Wformat=] 54 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:54:50: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'votca::Index' {aka 'int'} [-Wformat=] 54 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:62:23: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 62 | fprintf(_out, "%5ld%-5.5s%5.5s%5ld", (resnr + 1) % 100000, resname.c_str(), | ~~~^ ~~~~~~~~~~~~~~~~~~~~ | | | | long int votca::Index {aka int} | %5d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:62:38: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'votca::Index' {aka 'int'} [-Wformat=] 62 | fprintf(_out, "%5ld%-5.5s%5.5s%5ld", (resnr + 1) % 100000, resname.c_str(), | ~~~^ | | | long int | %5d 63 | atomname.c_str(), (i + 1) % 100000); | ~~~~~~~~~~~~~~~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:88:18: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 88 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf" | ~~^ | | | long int | %d 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:88:22: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'votca::Index' {aka 'int'} [-Wformat=] 88 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf" | ~~^ | | | long int | %d 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:88:28: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'votca::Index' {aka 'int'} [-Wformat=] 88 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf" | ~~^ | | | long int | %d 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:88:32: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'votca::Index' {aka 'int'} [-Wformat=] 88 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf" | ~~^ | | | long int | %d 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:88:38: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'votca::Index' {aka 'int'} [-Wformat=] 88 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf" | ~~^ | | | long int | %d 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:88:42: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'votca::Index' {aka 'int'} [-Wformat=] 88 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf" | ~~^ | | | long int | %d 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:18: warning: format '%ld' expects argument of type 'long int', but argument 9 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:22: warning: format '%ld' expects argument of type 'long int', but argument 10 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:28: warning: format '%ld' expects argument of type 'long int', but argument 11 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:32: warning: format '%ld' expects argument of type 'long int', but argument 12 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:38: warning: format '%ld' expects argument of type 'long int', but argument 13 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:42: warning: format '%ld' expects argument of type 'long int', but argument 14 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:48: warning: format '%ld' expects argument of type 'long int', but argument 15 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:52: warning: format '%ld' expects argument of type 'long int', but argument 16 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:58: warning: format '%ld' expects argument of type 'long int', but argument 17 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:62: warning: format '%ld' expects argument of type 'long int', but argument 18 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:68: warning: format '%ld' expects argument of type 'long int', but argument 19 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:89:72: warning: format '%ld' expects argument of type 'long int', but argument 20 has type 'votca::Index' {aka 'int'} [-Wformat=] 89 | "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", | ~~^ | | | long int | %d 90 | l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr, l, pr); | ~~ | | | votca::Index {aka int} /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:94:26: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 94 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:94:30: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'votca::Index' {aka 'int'} [-Wformat=] 94 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:94:36: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'votca::Index' {aka 'int'} [-Wformat=] 94 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:94:40: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'votca::Index' {aka 'int'} [-Wformat=] 94 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:94:46: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'votca::Index' {aka 'int'} [-Wformat=] 94 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/growriter.cc:94:50: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'votca::Index' {aka 'int'} [-Wformat=] 94 | sprintf(format, "%%%ld.%ldf%%%ld.%ldf%%%ld.%ldf\n", l, pr, l, pr, l, pr); | ~~^ ~~ | | | | long int votca::Index {aka int} | %d [ 46%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpreader.cc [ 47%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpwriter.cc /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpwriter.cc: In member function 'virtual void votca::csg::LAMMPSDumpWriter::Write(votca::csg::Topology*)': /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpwriter.cc:38:36: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 38 | fprintf(_out, "ITEM: TIMESTEP\n%ld\n", top->getStep()); | ~~^ ~~~~~~~~~~~~~~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpwriter.cc:39:43: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 39 | fprintf(_out, "ITEM: NUMBER OF ATOMS\n%li\n", (Index)top->Beads().size()); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | | votca::Index {aka int} | long int | %i /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpwriter.cc:61:22: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'votca::Index' {aka 'int'} [-Wformat=] 61 | fprintf(_out, "%ld %li", bi->getId() + 1, type_id); | ~~^ ~~~~~~~~~~~~~~~ | | | | long int votca::Index {aka int} | %d /build/votca-csg-1.6.4/src/libcsg/modules/io/lammpsdumpwriter.cc:61:26: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'votca::Index' {aka 'int'} [-Wformat=] 61 | fprintf(_out, "%ld %li", bi->getId() + 1, type_id); | ~~^ ~~~~~~~ | | | | long int votca::Index {aka int} | %i [ 48%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/pdbreader.cc [ 49%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/pdbwriter.cc [ 50%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/xmltopologyreader.cc [ 51%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/xyzreader.cc [ 52%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/xyzwriter.cc [ 53%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/gmxtopologyreader.cc [ 54%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/gmxtrajectoryreader.cc [ 55%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o -c /build/votca-csg-1.6.4/src/libcsg/modules/io/gmxtrajectorywriter.cc [ 56%] Linking CXX shared library libvotca_csg.so cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/cmake -E cmake_link_script CMakeFiles/votca_csg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libvotca_csg.so.6 -o libvotca_csg.so.6 CMakeFiles/votca_csg.dir/beadlist.cc.o CMakeFiles/votca_csg.dir/beadmotif.cc.o CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o CMakeFiles/votca_csg.dir/boundarycondition.cc.o CMakeFiles/votca_csg.dir/cgengine.cc.o CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o CMakeFiles/votca_csg.dir/csgapplication.cc.o CMakeFiles/votca_csg.dir/exclusionlist.cc.o CMakeFiles/votca_csg.dir/imcio.cc.o CMakeFiles/votca_csg.dir/map.cc.o CMakeFiles/votca_csg.dir/molecule.cc.o CMakeFiles/votca_csg.dir/nblist.cc.o CMakeFiles/votca_csg.dir/nblist_3body.cc.o CMakeFiles/votca_csg.dir/nblistgrid.cc.o CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o CMakeFiles/votca_csg.dir/nematicorder.cc.o CMakeFiles/votca_csg.dir/openbox.cc.o CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o CMakeFiles/votca_csg.dir/topology.cc.o CMakeFiles/votca_csg.dir/topologymap.cc.o CMakeFiles/votca_csg.dir/topologyreader.cc.o CMakeFiles/votca_csg.dir/trajectoryreader.cc.o CMakeFiles/votca_csg.dir/trajectorywriter.cc.o CMakeFiles/votca_csg.dir/triclinicbox.cc.o CMakeFiles/votca_csg.dir/version.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o /usr/lib/arm-linux-gnueabihf/libgromacs_d.so /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 -lpthread cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/cmake -E cmake_symlink_library libvotca_csg.so.6 libvotca_csg.so.6 libvotca_csg.so make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 56%] Built target votca_csg make -f src/tools/CMakeFiles/csg_imc_solve.dir/build.make src/tools/CMakeFiles/csg_imc_solve.dir/depend make -f src/tools/CMakeFiles/csg_dlptopol.dir/build.make src/tools/CMakeFiles/csg_dlptopol.dir/depend make -f src/tools/CMakeFiles/csg_fmatch.dir/build.make src/tools/CMakeFiles/csg_fmatch.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol.dir/depend.internal". Scanning dependencies of target csg_imc_solve Scanning dependencies of target csg_dlptopol make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_imc_solve.dir/build.make src/tools/CMakeFiles/csg_imc_solve.dir/build make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' Scanning dependencies of target csg_fmatch make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_dlptopol.dir/build.make src/tools/CMakeFiles/csg_dlptopol.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_fmatch.dir/build.make src/tools/CMakeFiles/csg_fmatch.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 57%] Building CXX object src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_imc_solve.cc [ 58%] Building CXX object src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_fmatch.cc [ 59%] Building CXX object src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_dlptopol.cc [ 60%] Linking CXX executable csg_dlptopol cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dlptopol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -o csg_dlptopol -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 60%] Built target csg_dlptopol make -f src/tools/CMakeFiles/csg_stat.dir/build.make src/tools/CMakeFiles/csg_stat.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat.dir/depend.internal". Scanning dependencies of target csg_stat make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_stat.dir/build.make src/tools/CMakeFiles/csg_stat.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 61%] Building CXX object src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_stat.dir/csg_stat.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_stat.cc [ 62%] Linking CXX executable csg_imc_solve cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_imc_solve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -o csg_imc_solve -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 62%] Built target csg_imc_solve make -f src/tools/CMakeFiles/csg_reupdate.dir/build.make src/tools/CMakeFiles/csg_reupdate.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate.dir/depend.internal". Scanning dependencies of target csg_reupdate make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_reupdate.dir/build.make src/tools/CMakeFiles/csg_reupdate.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 63%] Building CXX object src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_reupdate.cc [ 64%] Building CXX object src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_stat_imc.cc [ 65%] Linking CXX executable csg_fmatch cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_fmatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -o csg_fmatch -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 65%] Built target csg_fmatch make -f src/tools/CMakeFiles/csg_map.dir/build.make src/tools/CMakeFiles/csg_map.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map.dir/depend.internal". Scanning dependencies of target csg_map make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_map.dir/build.make src/tools/CMakeFiles/csg_map.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 66%] Building CXX object src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_map.dir/csg_map.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_map.cc [ 67%] Linking CXX executable csg_stat cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_stat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_stat.dir/csg_stat.cc.o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -o csg_stat -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 67%] Built target csg_stat make -f src/tools/CMakeFiles/csg_gmxtopol.dir/build.make src/tools/CMakeFiles/csg_gmxtopol.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol.dir/depend.internal". Scanning dependencies of target csg_gmxtopol make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_gmxtopol.dir/build.make src/tools/CMakeFiles/csg_gmxtopol.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 68%] Building CXX object src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_gmxtopol.cc [ 69%] Linking CXX executable csg_reupdate cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_reupdate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -o csg_reupdate -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 69%] Built target csg_reupdate make -f src/tools/CMakeFiles/csg_property.dir/build.make src/tools/CMakeFiles/csg_property.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property.dir/depend.internal". Scanning dependencies of target csg_property make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_property.dir/build.make src/tools/CMakeFiles/csg_property.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 70%] Building CXX object src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_property.dir/csg_property.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_property.cc [ 71%] Linking CXX executable csg_map cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_map.dir/csg_map.cc.o -o csg_map -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 71%] Built target csg_map make -f src/tools/CMakeFiles/csg_dump.dir/build.make src/tools/CMakeFiles/csg_dump.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump.dir/depend.internal". Scanning dependencies of target csg_dump make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_dump.dir/build.make src/tools/CMakeFiles/csg_dump.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 72%] Building CXX object src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_dump.dir/csg_dump.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_dump.cc [ 73%] Linking CXX executable csg_property cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_property.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_property.dir/csg_property.cc.o -o csg_property -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 73%] Built target csg_property make -f src/tools/CMakeFiles/csg_resample.dir/build.make src/tools/CMakeFiles/csg_resample.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample.dir/depend.internal". Scanning dependencies of target csg_resample make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_resample.dir/build.make src/tools/CMakeFiles/csg_resample.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 74%] Building CXX object src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_resample.dir/csg_resample.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_resample.cc [ 75%] Linking CXX executable csg_gmxtopol cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_gmxtopol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -o csg_gmxtopol -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 75%] Built target csg_gmxtopol make -f src/tools/CMakeFiles/csg_density.dir/build.make src/tools/CMakeFiles/csg_density.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density.dir/depend.internal". Scanning dependencies of target csg_density make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_density.dir/build.make src/tools/CMakeFiles/csg_density.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 76%] Building CXX object src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_density.dir/csg_density.cc.o -c /build/votca-csg-1.6.4/src/tools/csg_density.cc [ 77%] Linking CXX executable csg_dump cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dump.dir/csg_dump.cc.o -o csg_dump -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 77%] Built target csg_dump make -f src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/depend.internal". Scanning dependencies of target votca_csg_boltzmann make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 78%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o -c /build/votca-csg-1.6.4/src/csg_boltzmann/bondedstatistics.cc [ 79%] Linking CXX executable csg_resample cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_resample.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_resample.dir/csg_resample.cc.o -o csg_resample -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 79%] Built target csg_resample make -f share/template/CMakeFiles/template_threaded.dir/build.make share/template/CMakeFiles/template_threaded.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_threaded.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_threaded.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_threaded.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_threaded.dir/depend.internal". Scanning dependencies of target template_threaded make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f share/template/CMakeFiles/template_threaded.dir/build.make share/template/CMakeFiles/template_threaded.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 80%] Building CXX object share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/template_threaded.dir/template_threaded.cc.o -c /build/votca-csg-1.6.4/share/template/template_threaded.cc In file included from /usr/include/c++/10/vector:72, from /build/votca-csg-1.6.4/include/votca/csg/topology.h:25, from /build/votca-csg-1.6.4/include/votca/csg/cgobserver.h:21, from /build/votca-csg-1.6.4/src/csg_boltzmann/bondedstatistics.h:21, from /build/votca-csg-1.6.4/src/csg_boltzmann/bondedstatistics.cc:18: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'virtual void votca::csg::BondedStatistics::EvalConfiguration(votca::csg::Topology*, votca::csg::Topology*)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -c /build/votca-csg-1.6.4/src/csg_boltzmann/stdanalysis.cc [ 82%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -c /build/votca-csg-1.6.4/src/csg_boltzmann/tabulatedpotential.cc [ 83%] Linking CXX executable csg_density cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_density.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_density.dir/csg_density.cc.o -o csg_density -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 83%] Built target csg_density make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template/CMakeFiles/template_serial.dir/depend.internal". Scanning dependencies of target template_serial make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 84%] Building CXX object share/template/CMakeFiles/template_serial.dir/template_serial.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/template_serial.dir/template_serial.cc.o -c /build/votca-csg-1.6.4/share/template/template_serial.cc [ 85%] Linking CXX executable template_threaded cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_threaded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/template_threaded.dir/template_threaded.cc.o -o template_threaded -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg ../../src/libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 85%] Built target template_threaded make -f src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend.internal". Scanning dependencies of target csg_imc_solve_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 86%] Generating csg_imc_solve.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_imc_solve --help > csg_imc_solve.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_imc_solve.help > csg_imc_solve.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_imc_solve.t2t -o csg_imc_solve.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 86%] Built target csg_imc_solve_manpage make -f src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend.internal". Scanning dependencies of target csg_dlptopol_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 87%] Generating csg_dlptopol.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_dlptopol --help > csg_dlptopol.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_dlptopol.help > csg_dlptopol.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_dlptopol.t2t -o csg_dlptopol.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 87%] Built target csg_dlptopol_manpage make -f src/tools/CMakeFiles/csg_fmatch_manpage.dir/build.make src/tools/CMakeFiles/csg_fmatch_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_fmatch_manpage.dir/depend.internal". Scanning dependencies of target csg_fmatch_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_fmatch_manpage.dir/build.make src/tools/CMakeFiles/csg_fmatch_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 88%] Generating csg_fmatch.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_fmatch --help > csg_fmatch.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_fmatch.help > csg_fmatch.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_fmatch.t2t -o csg_fmatch.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 88%] Built target csg_fmatch_manpage make -f src/tools/CMakeFiles/csg_stat_manpage.dir/build.make src/tools/CMakeFiles/csg_stat_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_stat_manpage.dir/depend.internal". Scanning dependencies of target csg_stat_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_stat_manpage.dir/build.make src/tools/CMakeFiles/csg_stat_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 89%] Generating csg_stat.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_stat --help > csg_stat.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_stat.help > csg_stat.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_stat.t2t -o csg_stat.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 89%] Built target csg_stat_manpage make -f src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend.internal". Scanning dependencies of target csg_reupdate_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make src/tools/CMakeFiles/csg_reupdate_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 90%] Generating csg_reupdate.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_reupdate --help > csg_reupdate.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_reupdate.help > csg_reupdate.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_reupdate.t2t -o csg_reupdate.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 90%] Built target csg_reupdate_manpage make -f src/tools/CMakeFiles/csg_map_manpage.dir/build.make src/tools/CMakeFiles/csg_map_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_map_manpage.dir/depend.internal". Scanning dependencies of target csg_map_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_map_manpage.dir/build.make src/tools/CMakeFiles/csg_map_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 91%] Generating csg_map.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_map --help > csg_map.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_map.help > csg_map.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_map.t2t -o csg_map.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 91%] Built target csg_map_manpage make -f src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend.internal". Scanning dependencies of target csg_gmxtopol_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 92%] Generating csg_gmxtopol.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_gmxtopol --help > csg_gmxtopol.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_gmxtopol.help > csg_gmxtopol.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_gmxtopol.t2t -o csg_gmxtopol.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 92%] Built target csg_gmxtopol_manpage make -f src/tools/CMakeFiles/csg_property_manpage.dir/build.make src/tools/CMakeFiles/csg_property_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_property_manpage.dir/depend.internal". Scanning dependencies of target csg_property_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_property_manpage.dir/build.make src/tools/CMakeFiles/csg_property_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 93%] Generating csg_property.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_property --help > csg_property.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_property.help > csg_property.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_property.t2t -o csg_property.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 93%] Built target csg_property_manpage make -f src/tools/CMakeFiles/csg_dump_manpage.dir/build.make src/tools/CMakeFiles/csg_dump_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_dump_manpage.dir/depend.internal". Scanning dependencies of target csg_dump_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_dump_manpage.dir/build.make src/tools/CMakeFiles/csg_dump_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 94%] Generating csg_dump.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_dump --help > csg_dump.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_dump.help > csg_dump.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_dump.t2t -o csg_dump.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 94%] Built target csg_dump_manpage make -f src/tools/CMakeFiles/csg_resample_manpage.dir/build.make src/tools/CMakeFiles/csg_resample_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_resample_manpage.dir/depend.internal". Scanning dependencies of target csg_resample_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_resample_manpage.dir/build.make src/tools/CMakeFiles/csg_resample_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 95%] Generating csg_resample.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_resample --help > csg_resample.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_resample.help > csg_resample.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_resample.t2t -o csg_resample.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 95%] Built target csg_resample_manpage make -f src/tools/CMakeFiles/csg_density_manpage.dir/build.make src/tools/CMakeFiles/csg_density_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/CMakeFiles/csg_density_manpage.dir/depend.internal". Scanning dependencies of target csg_density_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/tools/CMakeFiles/csg_density_manpage.dir/build.make src/tools/CMakeFiles/csg_density_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 96%] Generating csg_density.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && ./csg_density --help > csg_density.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools/../../scripts/help2t2t csg_density.help > csg_density.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/tools && /usr/bin/txt2tags -q -t man -i csg_density.t2t -o csg_density.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 96%] Built target csg_density_manpage [ 97%] Linking CXX static library libvotca_csg_boltzmann.a cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/cmake -P CMakeFiles/votca_csg_boltzmann.dir/cmake_clean_target.cmake cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/cmake -E cmake_link_script CMakeFiles/votca_csg_boltzmann.dir/link.txt --verbose=1 /usr/bin/ar qc libvotca_csg_boltzmann.a CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o /usr/bin/ranlib libvotca_csg_boltzmann.a make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 97%] Built target votca_csg_boltzmann make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend.internal". Scanning dependencies of target csg_boltzmann make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 97%] Building CXX object src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_boltzmann.dir/main.cc.o -c /build/votca-csg-1.6.4/src/csg_boltzmann/main.cc [ 98%] Linking CXX executable template_serial cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_serial.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/template_serial.dir/template_serial.cc.o -o template_serial -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg ../../src/libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 98%] Built target template_serial [ 99%] Linking CXX executable csg_boltzmann cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_boltzmann.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_boltzmann.dir/main.cc.o -o csg_boltzmann -Wl,-rpath,/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/libcsg: libvotca_csg_boltzmann.a ../libcsg/libvotca_csg.so.6 /usr/lib/arm-linux-gnueabihf/libvotca_tools.so.6 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [ 99%] Built target csg_boltzmann make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/depend.internal". Scanning dependencies of target csg_boltzmann_manpage make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [100%] Generating csg_boltzmann.man cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && ./csg_boltzmann --help > csg_boltzmann.help cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /bin/bash /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann/../../scripts/help2t2t csg_boltzmann.help > csg_boltzmann.t2t cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/src/csg_boltzmann && /usr/bin/txt2tags -q -t man -i csg_boltzmann.t2t -o csg_boltzmann.man make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [100%] Built target csg_boltzmann_manpage make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/depend make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cd /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-1.6.4 /build/votca-csg-1.6.4 /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/CMakeFiles/manpages.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/CMakeFiles/manpages.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/CMakeFiles/manpages.dir/depend.internal". Dependee "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/CMakeFiles/manpages.dir/depend.internal". Scanning dependencies of target manpages make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/build make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/manpages.dir/build'. make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' [100%] Built target manpages make[2]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/votca-csg-1.6.4/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/votca-csg-1.6.4' dh_auto_install cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/votca-csg-1.6.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/votca-csg-1.6.4 -B/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libvotca_csg.so.6 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libvotca_csg.so -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/VOTCA_CSG/VOTCA_CSG_Targets.cmake -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/VOTCA_CSG/VOTCA_CSG_Targets-none.cmake -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/VOTCA_CSG/VOTCA_CSGConfig.cmake -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/VOTCA_CSG/VOTCA_CSGConfigVersion.cmake -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_reupdate -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_reupdate" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_reupdate.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_map -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_map" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_map.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_dump -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_dump" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_dump.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_property -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_property" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_property.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_resample -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_resample" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_resample.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_stat -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_stat" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_stat.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_fmatch -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_fmatch" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_fmatch.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_gmxtopol -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_gmxtopol" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_gmxtopol.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_dlptopol -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_dlptopol" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_dlptopol.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_density -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_density" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_density.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_imc_solve -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_imc_solve" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_imc_solve.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_boltzmann -- Set runtime path of "/build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_boltzmann" to "" -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_boltzmann.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_call -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_call.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/bin/csg_inverse -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_inverse.1 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/rc/csg-completion.bash -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/basebead.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/bead.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadlist.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadmotif.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadmotifalgorithms.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadmotifconnector.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadpair.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadstructure.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadstructurealgorithms.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadtriple.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadtype.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/boundarycondition.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/cgengine.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/cgmoleculedef.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/cgobserver.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/csgapplication.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/exclusionlist.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/fileformatfactory.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/imcio.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/interaction.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/map.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/molecule.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/moleculeitem.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nblist.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nblist_3body.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nblistgrid.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nblistgrid_3body.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nematicorder.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/openbox.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/orthorhombicbox.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/pairlist.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/pdbwriter.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/potentialfunction.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/potentialfunctioncbspl.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/potentialfunctionlj126.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/potentialfunctionljg.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/residue.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/topology.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/topologyitem.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/topologymap.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/topologyreader.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/trajectoryreader.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/trajectorywriter.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/triclinicbox.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/triplelist.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/version.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/xyzreader.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/xyzwriter.h -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/man/man7/votca-csg.7 -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/xml/mapping.xml -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/xml/topol.xml -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/xml/csg_defaults.xml -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/CsgFunctions.pm -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/CsgSimplex.pm -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/csg_table -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/add_POT.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/add_pot_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_density_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_kbint.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_pressure_gromacs.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_pressure_lammps.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_rdf_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_target_rdf_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/clean_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/cma_processor.py -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/convergence_check_default.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/dist_adjust.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/dist_boltzmann_invert.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/dummy.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/functions_common.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/functions_dlpoly.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/functions_genericsim.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/functions_gromacs.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/imc_stat_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_genericsim.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_optimizer.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_re.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/inverse.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/kbibi_ramp_correction.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/lj_126.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/merge_tables.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_parameters_to_potential.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_prepare_state.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_state_to_mapping.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_state_to_potentials.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_target_density.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_target_pressure.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_target_rdf.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_add.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_add_single.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_update_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_update_generic_single.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_update_re_single.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_acc_convergence.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_average.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_compress.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_convergence.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_copyback.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_dummy.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_overwrite.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_plot.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_shift.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_addlj.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_cibi_correction.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_extrapolate.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_kbibi_correction.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_pressure.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_scale.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_smooth.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_splinesmooth.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_extrapolate.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_shift.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_to_dlpoly.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_to_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_to_gromacs.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_to_lammps.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potentials_to_dlpoly.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potentials_to_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/pre_update_re.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_generic.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_generic_single.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_imc.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_optimizer.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_optimizer_single.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_re.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/pressure_cor_simple.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/pressure_cor_wjk.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/resample_target.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/run_genericsim.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/run_gromacs.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/simplex_downhill_processor.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/skeleton.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/skeleton.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/start_framework.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_average.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_change_flag.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_combine.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_dummy.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_extrapolate.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_functional.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_get_value.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_integrate.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_linearop.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_scale.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_smooth.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_switch_border.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_to_tab.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_to_xvg.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/tables_jackknife.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/tag_file.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_ibi.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_ibi_pot.pl -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_ibi_single.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_imc.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_imc_single.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_optimizer.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_optimizer_single.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_re.sh -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/template/template_serial.cc -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/template/template_threaded.cc -- Installing: /build/votca-csg-1.6.4/debian/tmp/usr/share/votca/template/CMakeLists.txt make[2]: Leaving directory '/build/votca-csg-1.6.4/obj-arm-linux-gnueabihf' cp -r tutorials debian/tmp/usr/share/votca/ rm -f debian/tmp/usr/share/votca/tutorials/.gitignore chmod 755 debian/tmp/usr/share/votca/tutorials/urea-water/kb-ibi/run.sh make[1]: Leaving directory '/build/votca-csg-1.6.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_bash-completion debian/rules override_dh_python3 make[1]: Entering directory '/build/votca-csg-1.6.4' dh_python3 /usr/share/votca/scripts/inverse/ -X.sh -X.pl I: dh_python3 tools:114: replacing shebang in debian/votca-csg-scripts/usr/share/votca/scripts/inverse/cma_processor.py make[1]: Leaving directory '/build/votca-csg-1.6.4' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/votca-csg-1.6.4' dh_missing --list-missing dh_missing: warning: usr/share/votca/rc/csg-completion.bash exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libvotca-csg-dev (5), libvotca-csg6 (1), votca-csg (15), votca-csg-scripts (2), votca-csg-tutorials (1) * dh_installdocs: libvotca-csg-dev (0), libvotca-csg6 (0), votca-csg (0), votca-csg-scripts (0), votca-csg-tutorials (0) * dh_installman: libvotca-csg-dev (0), libvotca-csg6 (0), votca-csg (0), votca-csg-scripts (0), votca-csg-tutorials (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. make[1]: Leaving directory '/build/votca-csg-1.6.4' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_gmxtopol contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_fmatch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_property contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_density contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_dump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_dlptopol contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libvotca-csg6/usr/lib/arm-linux-gnueabihf/libvotca_csg.so.6 found in none of the libraries dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_imc_solve contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_resample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_reupdate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_map contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_stat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/votca-csg/usr/bin/csg_boltzmann contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package votca-csg-scripts: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'votca-csg-scripts' in '../votca-csg-scripts_1.6.4-1_all.deb'. dpkg-deb: building package 'libvotca-csg-dev' in '../libvotca-csg-dev_1.6.4-1_armhf.deb'. dpkg-deb: building package 'votca-csg-dbgsym' in '../votca-csg-dbgsym_1.6.4-1_armhf.deb'. dpkg-deb: building package 'libvotca-csg6' in '../libvotca-csg6_1.6.4-1_armhf.deb'. dpkg-deb: building package 'votca-csg-tutorials' in '../votca-csg-tutorials_1.6.4-1_all.deb'. dpkg-deb: building package 'libvotca-csg6-dbgsym' in '../libvotca-csg6-dbgsym_1.6.4-1_armhf.deb'. dpkg-deb: building package 'votca-csg' in '../votca-csg_1.6.4-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../votca-csg_1.6.4-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19292 and its subdirectories I: Current time: Sat Jul 24 05:35:20 -12 2021 I: pbuilder-time-stamp: 1627148120 Sat Jul 24 17:36:24 UTC 2021 I: 1st build successful. Starting 2nd build on remote node virt32c-armhf-rb.debian.net. Sat Jul 24 17:36:24 UTC 2021 I: Preparing to do remote build '2' on virt32c-armhf-rb.debian.net. Sat Jul 24 18:04:10 UTC 2021 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. Sat Jul 24 18:04:12 UTC 2021 I: votca-csg_1.6.4-1_armhf.changes: Format: 1.8 Date: Thu, 28 Jan 2021 21:43:05 -0800 Source: votca-csg Binary: libvotca-csg-dev libvotca-csg6 libvotca-csg6-dbgsym votca-csg votca-csg-dbgsym votca-csg-scripts votca-csg-tutorials Architecture: armhf all Version: 1.6.4-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Nicholas Breen Description: libvotca-csg-dev - VOTCA's coarse-graining library, development kit libvotca-csg6 - VOTCA's coarse-graining library votca-csg - VOTCA's coarse-graining engine votca-csg-scripts - VOTCA's coarse-graining scripts votca-csg-tutorials - VOTCA's coarse-graining tutorials Changes: votca-csg (1.6.4-1) unstable; urgency=medium . * New upstream release. Checksums-Sha1: 03412e87a21528ab28f7817fa10ae388a2fd0251 40908 libvotca-csg-dev_1.6.4-1_armhf.deb 23027aaec146c0f7a9f9cf51f382ca07ec6a2b20 12509248 libvotca-csg6-dbgsym_1.6.4-1_armhf.deb dc2c6d3da7d2344e22d4a2fa626fe526fd8c3141 270440 libvotca-csg6_1.6.4-1_armhf.deb 0438112409b968a3a2ed579dda51f0f068f9f532 9696380 votca-csg-dbgsym_1.6.4-1_armhf.deb c7eeb95a5128e45c604e0856ab1d21ea1a4c0989 71852 votca-csg-scripts_1.6.4-1_all.deb 3db9c6d95e15294c5be1b985ddde1280ec90b760 2674648 votca-csg-tutorials_1.6.4-1_all.deb f5c98282a6f12f6d0abcd81745791027dd5a1aed 8478 votca-csg_1.6.4-1_armhf.buildinfo 50a3356d6cdd730e48bbafa727d95affd79b5082 307420 votca-csg_1.6.4-1_armhf.deb Checksums-Sha256: 5a33e3f9523d5795b3999b6acee21ece2d06e6e78f7cfaa4d4e9b292c80fa108 40908 libvotca-csg-dev_1.6.4-1_armhf.deb b4a72c6bd0a7c567d15880d29702bca757529024d2550fd96f5a286539c45154 12509248 libvotca-csg6-dbgsym_1.6.4-1_armhf.deb 0cf1e2ab5e10a2abd0efece4d1e9b408d21d3b0c3b204eef8d40a72237ec633d 270440 libvotca-csg6_1.6.4-1_armhf.deb 303eb73a28e3897322735f0bb4c030010913d9f6f1c68667db925cdb84ce1a12 9696380 votca-csg-dbgsym_1.6.4-1_armhf.deb 88cb217ceb31f1c4a63246a4c30613cfab586734b4a3969622061dbb851942b1 71852 votca-csg-scripts_1.6.4-1_all.deb 9ade3852848128372b40d29c9cc375e932833088fc09e54af3d9a62f49f5364e 2674648 votca-csg-tutorials_1.6.4-1_all.deb ee75da5d7f025129d3bc9ccca86797c4533a86902161f3532b32594583bde3f0 8478 votca-csg_1.6.4-1_armhf.buildinfo 61f1ad2160a3a690095cc39d524a4cfcbf464b1ac783774596f0c3b6d810eb73 307420 votca-csg_1.6.4-1_armhf.deb Files: 758a4e3c24da57cb7d78e764d77b9c51 40908 libdevel optional libvotca-csg-dev_1.6.4-1_armhf.deb 7bdf6af38e9cf998b61d214d9dc2ee5e 12509248 debug optional libvotca-csg6-dbgsym_1.6.4-1_armhf.deb d848f505a8e8876d4c44020810d06576 270440 libs optional libvotca-csg6_1.6.4-1_armhf.deb 679aeb48a2cdbb5f7515057dab06bfd9 9696380 debug optional votca-csg-dbgsym_1.6.4-1_armhf.deb d32f9674cb1c0b24d984609111c9b0a8 71852 science optional votca-csg-scripts_1.6.4-1_all.deb 329e041acc310b8cfa131d3fced7a68d 2674648 science optional votca-csg-tutorials_1.6.4-1_all.deb 094d71b71f1a13cd27f503a843f50b94 8478 science optional votca-csg_1.6.4-1_armhf.buildinfo 8c6a452d102f511f938ab1bcadf90628 307420 science optional votca-csg_1.6.4-1_armhf.deb Sat Jul 24 18:04:14 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/votca-csg_1.6.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/votca-csg_1.6.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/votca-csg_1.6.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/b1/votca-csg_1.6.4-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.MNEqzoQPcR/b2/votca-csg_1.6.4-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.548s) 0.548s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.285s) 0.285s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Jul 24 18:04:16 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Jul 24 18:04:16 UTC 2021 I: votca-csg from bullseye built successfully and reproducibly on armhf. Sat Jul 24 18:04:17 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Jul 24 18:04:17 UTC 2021 I: Submitting 12K b1/votca-csg_1.6.4-1_armhf.buildinfo.asc Sat Jul 24 18:04:19 UTC 2021 I: Submitting 12K b2/votca-csg_1.6.4-1_armhf.buildinfo.asc Sat Jul 24 18:04:19 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jul 24 18:04:19 UTC 2021 I: Done submitting .buildinfo files. Sat Jul 24 18:04:19 UTC 2021 I: Removing signed votca-csg_1.6.4-1_armhf.buildinfo.asc files: removed './b1/votca-csg_1.6.4-1_armhf.buildinfo.asc' removed './b2/votca-csg_1.6.4-1_armhf.buildinfo.asc'