Tue Jan 9 18:16:26 UTC 2024 I: starting to build libbioparser-dev/bullseye/i386 on jenkins on '2024-01-09 18:16' Tue Jan 9 18:16:26 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/11174/console.log Tue Jan 9 18:16:26 UTC 2024 I: Downloading source for bullseye/libbioparser-dev=3.0.12-1 --2024-01-09 18:16:26-- http://cdn-fastly.deb.debian.org/debian/pool/main/libb/libbioparser-dev/libbioparser-dev_3.0.12-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2060 (2.0K) [text/prs.lines.tag] Saving to: ‘libbioparser-dev_3.0.12-1.dsc’ 0K .. 100% 22.3M=0s 2024-01-09 18:16:27 (22.3 MB/s) - ‘libbioparser-dev_3.0.12-1.dsc’ saved [2060/2060] Tue Jan 9 18:16:27 UTC 2024 I: libbioparser-dev_3.0.12-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbioparser-dev Binary: libbioparser-dev Architecture: all Version: 3.0.12-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rvaser/bioparser/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libbioparser-dev Vcs-Git: https://salsa.debian.org/med-team/libbioparser-dev.git Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libgtest-dev (>> 1.8.0-10~) Package-List: libbioparser-dev deb libdevel optional arch=all Checksums-Sha1: b1d0b3703544061c30304acf3edc6dab2c47eb51 1013450 libbioparser-dev_3.0.12.orig.tar.gz a672befef342be1a0e60a135a5542c2285d5a903 4240 libbioparser-dev_3.0.12-1.debian.tar.xz Checksums-Sha256: 354dd974f172b343e21f0330d357f20952c6231caaa18d5049a02902c58be6cb 1013450 libbioparser-dev_3.0.12.orig.tar.gz adafbafa6402e01c573bb2ed77357b7bdd398a4c5e5e407f5fd2b893a36814ed 4240 libbioparser-dev_3.0.12-1.debian.tar.xz Files: 9989d465a9b7fa7031e15ef4236add1e 1013450 libbioparser-dev_3.0.12.orig.tar.gz d145110066fb0a63ca09df39b9983191 4240 libbioparser-dev_3.0.12-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl/3HE8ACgkQPCZ2P2xn 5uIZng//R5fXS8YCGuWekziKF5IC24zuO6DNfViBe9Q8WB8xNtC7Q/RTV6uJWXMt 8x9tWM4QwNbutzITSTRMA57KnHLTxx1RoqAhWlMdiq21FmelgijGf1boCaKGXqam xAJO/m6jAKNJgH6Yb9vSyhNRNB+F4PVPZgnlK5vu3psPJJSHVtZi5BBwiBYmDusJ JiyWzej+Cgk7QYLm8LdQ8boytSd4gRq7ugIkAwpvYx3sru8PJ0OKrNXAThwMbNfE iXYlGuEAXHz+Wq0iw5VTtFUWREDXDhtkpzYrzhACp+ZANFIuVA47kbw0vhW4Zywp adgeYZUumAT+oq3Ra2hAmHaWKm1k0gTPjx7py6/jRZ3oq3G+WUs3K/gGeN5LUlwL Ssus4KcNVsb1hrWYtT55c60mz27i5Si7YU7YqPXGQ6wXCG7FSVxsGLqt6XG8mPp3 dgCbK4lUMQy+xOS2zp+us5oPtBK3S79wQ2kD7ZOzS5m9o5ogXrCR2atu5CYQu7k1 dzRwlhIjRXwRqks5NXRP4dBWgAvoJdsDvtwtxrZiSotDpjWSoT/M5xIksPEzwPR/ IPkqTkgXQZRbB8oeHSaiNN7tXyr/JaUHWxwYsFcyDByTCideD5BPkBVHp8Ddmu4l 1oM1HVzHNHu+c/7ZsDpqrTohYv8jNgPw6oFVFinAS6cYWDcPibQ= =9KG5 -----END PGP SIGNATURE----- Tue Jan 9 18:16:27 UTC 2024 I: Checking whether the package is not for us Tue Jan 9 18:16:27 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Tue Jan 9 18:16:27 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Tue Jan 9 18:17:01 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 9 06:16:29 -12 2024 I: pbuilder-time-stamp: 1704824189 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libbioparser-dev_3.0.12-1.dsc] I: copying [./libbioparser-dev_3.0.12.orig.tar.gz] I: copying [./libbioparser-dev_3.0.12-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.QmEowb3d/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 7 14:35:59 2021 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbioparser-dev_3.0.12-1.dsc dpkg-source: info: extracting libbioparser-dev in libbioparser-dev-3.0.12 dpkg-source: info: unpacking libbioparser-dev_3.0.12.orig.tar.gz dpkg-source: info: unpacking libbioparser-dev_3.0.12-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying biosoup I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24080/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='df444963e00148658909e8e402b502b7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24080' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nskCXyLL/pbuilderrc_gw0h --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nskCXyLL/b1 --logfile b1/build.log libbioparser-dev_3.0.12-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 71928 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Nov 7 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jan 20 2022 more -rwsr-xr-x 1 root root 50720 Jan 20 2022 mount -rwxr-xr-x 1 root root 13856 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 7 09:24 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jan 20 2022 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/24080/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libgtest-dev (>> 1.8.0-10~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev (>> 1.8.0-10~); however: Package libgtest-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 32.6 MB of archives. After unpacking 122 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8+deb11u1 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2+deb11u2 [110 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3+deb11u1 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3+deb11u1 [135 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3+deb11u1 [69.2 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7+deb11u4 [728 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+deb11u1 [384 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1+deb11u1 [70.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1+deb11u1 [110 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3+deb11u1 [244 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.3+deb11u9 [377 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2+deb11u5 [101 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-2 [139 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2+deb11u1 [7029 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 googletest all 1.10.0.20201025-1.1 [629 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libgtest-dev i386 1.10.0.20201025-1.1 [1451 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2+deb11u2 [194 kB] Fetched 32.6 MB in 3s (12.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8+deb11u1_i386.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbioparser-dev-3.0.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbioparser-dev_3.0.12-1_source.changes dpkg-buildpackage: info: source package libbioparser-dev dpkg-buildpackage: info: source version 3.0.12-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.0.12' dh_auto_configure -- -Dbioparser_build_tests=ON cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -Dbioparser_build_tests=ON .. -- The CXX compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") -- Found GTest: /usr/lib/i386-linux-gnu/libgtest.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.0.12' dh_auto_build cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbioparser-dev-3.0.12 -B/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/depend make[3]: Entering directory '/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu' cd /build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbioparser-dev-3.0.12 /build/reproducible-path/libbioparser-dev-3.0.12 /build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu /build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu /build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu/CMakeFiles/bioparser_test.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu/CMakeFiles/bioparser_test.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu/CMakeFiles/bioparser_test.dir/depend.internal". 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Scanning dependencies of target bioparser_test make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/build make[3]: Entering directory '/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu' [ 14%] Building CXX object CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o [ 28%] Building CXX object CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o /usr/bin/c++ -DBIOPARSER_DATA_PATH=\"/build/reproducible-path/libbioparser-dev-3.0.12/test/data/\" -I/build/reproducible-path/libbioparser-dev-3.0.12/include -I/build/reproducible-path/libbioparser-dev-3.0.12/vendor/biosoup/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/libbioparser-dev-3.0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o -c 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-DBIOPARSER_DATA_PATH=\"/build/reproducible-path/libbioparser-dev-3.0.12/test/data/\" -I/build/reproducible-path/libbioparser-dev-3.0.12/include -I/build/reproducible-path/libbioparser-dev-3.0.12/vendor/biosoup/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/libbioparser-dev-3.0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.0.12/test/parser_test.cpp /usr/bin/c++ -DBIOPARSER_DATA_PATH=\"/build/reproducible-path/libbioparser-dev-3.0.12/test/data/\" -I/build/reproducible-path/libbioparser-dev-3.0.12/include -I/build/reproducible-path/libbioparser-dev-3.0.12/vendor/biosoup/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/libbioparser-dev-3.0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.0.12/test/mhap_parser_test.cpp /usr/bin/c++ -DBIOPARSER_DATA_PATH=\"/build/reproducible-path/libbioparser-dev-3.0.12/test/data/\" -I/build/reproducible-path/libbioparser-dev-3.0.12/include -I/build/reproducible-path/libbioparser-dev-3.0.12/vendor/biosoup/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/libbioparser-dev-3.0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.0.12/test/fastq_parser_test.cpp /usr/bin/c++ -DBIOPARSER_DATA_PATH=\"/build/reproducible-path/libbioparser-dev-3.0.12/test/data/\" -I/build/reproducible-path/libbioparser-dev-3.0.12/include -I/build/reproducible-path/libbioparser-dev-3.0.12/vendor/biosoup/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/libbioparser-dev-3.0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -c /build/reproducible-path/libbioparser-dev-3.0.12/test/sam_parser_test.cpp [100%] Linking CXX executable bin/bioparser_test /usr/bin/cmake -E cmake_link_script CMakeFiles/bioparser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/libbioparser-dev-3.0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro CMakeFiles/bioparser_test.dir/test/parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fasta_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/fastq_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/mhap_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/paf_parser_test.cpp.o CMakeFiles/bioparser_test.dir/test/sam_parser_test.cpp.o -o bin/bioparser_test /usr/lib/i386-linux-gnu/libgtest_main.a /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libgtest.a -lpthread make[3]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu' [100%] Built target bioparser_test make[2]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.0.12/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libbioparser-dev-3.0.12' set -e -x; for f in obj-*/bin/*_test; do [ ! -x $f ] || $f; done + [ ! -x obj-i686-linux-gnu/bin/bioparser_test ] + obj-i686-linux-gnu/bin/bioparser_test Running main() from /build/googletest-W8gZIB/googletest-1.10.0.20201025/googletest/src/gtest_main.cc [==========] Running 35 tests from 6 test suites. [----------] Global test environment set-up. [----------] 1 test from BioparserParserTest [ RUN ] BioparserParserTest.Create [ OK ] BioparserParserTest.Create (0 ms) [----------] 1 test from BioparserParserTest (0 ms total) [----------] 10 tests from BioparserFastaTest [ RUN ] BioparserFastaTest.ParseWhole [ OK ] BioparserFastaTest.ParseWhole (5 ms) [ RUN ] BioparserFastaTest.ParseWholeWithoutTrimming [ OK ] BioparserFastaTest.ParseWholeWithoutTrimming (4 ms) [ RUN ] BioparserFastaTest.ParseInChunks [ OK ] BioparserFastaTest.ParseInChunks (4 ms) [ RUN ] BioparserFastaTest.FormatError [ OK ] BioparserFastaTest.FormatError (4 ms) [ RUN ] BioparserFastaTest.ParseAndReset [ OK ] BioparserFastaTest.ParseAndReset (5 ms) [ RUN ] BioparserFastaTest.CompressedParseWhole [ OK ] BioparserFastaTest.CompressedParseWhole (5 ms) [ RUN ] BioparserFastaTest.CompressedParseWholeWithoutTrimming [ OK ] BioparserFastaTest.CompressedParseWholeWithoutTrimming (4 ms) [ RUN ] BioparserFastaTest.CompressedParseInChunks [ OK ] BioparserFastaTest.CompressedParseInChunks (4 ms) [ RUN ] BioparserFastaTest.CompressedParseAndReset [ OK ] BioparserFastaTest.CompressedParseAndReset (6 ms) [ RUN ] BioparserFastaTest.CompressedFormatError [ OK ] BioparserFastaTest.CompressedFormatError (6 ms) [----------] 10 tests from BioparserFastaTest (48 ms total) [----------] 6 tests from BioparserFastqTest [ RUN ] BioparserFastqTest.ParseWhole [ OK ] BioparserFastqTest.ParseWhole (5 ms) [ RUN ] BioparserFastqTest.ParseInChunks [ OK ] BioparserFastqTest.ParseInChunks (4 ms) [ RUN ] BioparserFastqTest.FormatError [ OK ] BioparserFastqTest.FormatError (4 ms) [ RUN ] BioparserFastqTest.CompressedParseWhole [ OK ] BioparserFastqTest.CompressedParseWhole (7 ms) [ RUN ] BioparserFastqTest.CompressedParseInChunks [ OK ] BioparserFastqTest.CompressedParseInChunks (6 ms) [ RUN ] BioparserFastqTest.CompressedFormatError [ OK ] BioparserFastqTest.CompressedFormatError (4 ms) [----------] 6 tests from BioparserFastqTest (31 ms total) [----------] 6 tests from BioparserMhapTest [ RUN ] BioparserMhapTest.ParseWhole /build/reproducible-path/libbioparser-dev-3.0.12/test/mhap_parser_test.cpp:51: Failure Expected equality of these values: 7816660 std::accumulate(o.begin(), o.end(), 0, [] (std::uint32_t s, const std::unique_ptr& it) { return s + it->lhs_id + it->lhs_begin + it->lhs_end + it->lhs_len + it->rhs_id + it->rhs_begin + it->rhs_end + it->rhs_len + it->score + it->strand + it->error; }) Which is: 7816600 [ FAILED ] BioparserMhapTest.ParseWhole (0 ms) [ RUN ] BioparserMhapTest.ParseInChunks /build/reproducible-path/libbioparser-dev-3.0.12/test/mhap_parser_test.cpp:51: Failure Expected equality of these values: 7816660 std::accumulate(o.begin(), o.end(), 0, [] (std::uint32_t s, const std::unique_ptr& it) { return s + it->lhs_id + it->lhs_begin + it->lhs_end + it->lhs_len + it->rhs_id + it->rhs_begin + it->rhs_end + it->rhs_len + it->score + it->strand + it->error; }) Which is: 7816600 [ FAILED ] BioparserMhapTest.ParseInChunks (0 ms) [ RUN ] BioparserMhapTest.FormatError [ OK ] BioparserMhapTest.FormatError (0 ms) [ RUN ] BioparserMhapTest.CompressedParseWhole /build/reproducible-path/libbioparser-dev-3.0.12/test/mhap_parser_test.cpp:51: Failure Expected equality of these values: 7816660 std::accumulate(o.begin(), o.end(), 0, [] (std::uint32_t s, const std::unique_ptr& it) { return s + it->lhs_id + it->lhs_begin + it->lhs_end + it->lhs_len + it->rhs_id + it->rhs_begin + it->rhs_end + it->rhs_len + it->score + it->strand + it->error; }) Which is: 7816600 [ FAILED ] BioparserMhapTest.CompressedParseWhole (1 ms) [ RUN ] BioparserMhapTest.CompressedParseInChunks /build/reproducible-path/libbioparser-dev-3.0.12/test/mhap_parser_test.cpp:51: Failure Expected equality of these values: 7816660 std::accumulate(o.begin(), o.end(), 0, [] (std::uint32_t s, const std::unique_ptr& it) { return s + it->lhs_id + it->lhs_begin + it->lhs_end + it->lhs_len + it->rhs_id + it->rhs_begin + it->rhs_end + it->rhs_len + it->score + it->strand + it->error; }) Which is: 7816600 [ FAILED ] BioparserMhapTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserMhapTest.CompressedFormatError [ OK ] BioparserMhapTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserMhapTest (2 ms total) [----------] 6 tests from BioparserPafTest [ RUN ] BioparserPafTest.ParseWhole [ OK ] BioparserPafTest.ParseWhole (1 ms) [ RUN ] BioparserPafTest.ParseInChunks [ OK ] BioparserPafTest.ParseInChunks (1 ms) [ RUN ] BioparserPafTest.FormatError [ OK ] BioparserPafTest.FormatError (0 ms) [ RUN ] BioparserPafTest.CompressedParseWhole [ OK ] BioparserPafTest.CompressedParseWhole (2 ms) [ RUN ] BioparserPafTest.CompressedParseInChunks [ OK ] BioparserPafTest.CompressedParseInChunks (2 ms) [ RUN ] BioparserPafTest.CompressedFormatError [ OK ] BioparserPafTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserPafTest (6 ms total) [----------] 6 tests from BioparserSamTest [ RUN ] BioparserSamTest.ParseWhole [ OK ] BioparserSamTest.ParseWhole (3 ms) [ RUN ] BioparserSamTest.ParseInChunks [ OK ] BioparserSamTest.ParseInChunks (3 ms) [ RUN ] BioparserSamTest.FormatError [ OK ] BioparserSamTest.FormatError (0 ms) [ RUN ] BioparserSamTest.CompressedParseWhole [ OK ] BioparserSamTest.CompressedParseWhole (9 ms) [ RUN ] BioparserSamTest.CompressedParseInChunks [ OK ] BioparserSamTest.CompressedParseInChunks (9 ms) [ RUN ] BioparserSamTest.CompressedFormatError [ OK ] BioparserSamTest.CompressedFormatError (0 ms) [----------] 6 tests from BioparserSamTest (25 ms total) [----------] Global test environment tear-down [==========] 35 tests from 6 test suites ran. (112 ms total) [ PASSED ] 31 tests. [ FAILED ] 4 tests, listed below: [ FAILED ] BioparserMhapTest.ParseWhole [ FAILED ] BioparserMhapTest.ParseInChunks [ FAILED ] BioparserMhapTest.CompressedParseWhole [ FAILED ] BioparserMhapTest.CompressedParseInChunks 4 FAILED TESTS make[1]: *** [debian/rules:15: override_dh_auto_test] Error 1 make[1]: Leaving directory '/build/reproducible-path/libbioparser-dev-3.0.12' make: *** [debian/rules:8: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24080 and its subdirectories Tue Jan 9 18:17:03 UTC 2024 W: No second build log, what happened?