Wed Jul 14 10:46:43 UTC 2021 I: starting to build minc-tools/bullseye/i386 on jenkins on '2021-07-14 10:46' Wed Jul 14 10:46:43 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/14266/console.log Wed Jul 14 10:46:43 UTC 2021 I: Downloading source for bullseye/minc-tools=2.3.00+dfsg-6 --2021-07-14 10:46:43-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/minc-tools/minc-tools_2.3.00+dfsg-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2193 (2.1K) Saving to: ‘minc-tools_2.3.00+dfsg-6.dsc’ 0K .. 100% 201M=0s 2021-07-14 10:46:43 (201 MB/s) - ‘minc-tools_2.3.00+dfsg-6.dsc’ saved [2193/2193] Wed Jul 14 10:46:43 UTC 2021 I: minc-tools_2.3.00+dfsg-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: minc-tools Binary: minc-tools Architecture: any Version: 2.3.00+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Steve M. Robbins , Andreas Tille Homepage: https://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/minc-tools Vcs-Git: https://salsa.debian.org/med-team/minc-tools.git Build-Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev (>= 2.3), libnifti2-dev (>= 3.0.1-4~), libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev Package-List: minc-tools deb science optional arch=any Checksums-Sha1: d5f2d7d633410b1a1f1d4026adcd2c125a16847f 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 616557504867172611b4d030dc646f95d831f0db 13868 minc-tools_2.3.00+dfsg-6.debian.tar.xz Checksums-Sha256: 002b01c54b11305dc7350cc7e553debc4d07d4896b2eee850233d07ecc9989b9 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 1c9950d12daf94eabc76f974d284641f155a42b1996c84504b0f49b5d82123cf 13868 minc-tools_2.3.00+dfsg-6.debian.tar.xz Files: 629912702e72bce17b78361027105e2b 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 9c331ce0e31c40c2d20406750a77f9d8 13868 minc-tools_2.3.00+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/PcB0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG+dQ/+LYnLBTS7VUgbP4gd9rJyPrCQvXzx1h9j cdeU3VvLi7gbPRViEcEXp989qcC6FT3bbIh6fhnv1ZNQ1W682IPGY2njM4Dn3Jfe wc/sJBR577zcsmT6KUN+QXn9n7HxehdaspsUF/D9EN0/EgRqESPukFdiVsQ2bhge MPbt+AE9ITQTR8G4Qjp670iro8Mpx8zbdnPB1NqKACTvIawd/uEkJ5BOVbTQXXAq dUp31UM5lSkUAiSo+0nejT8zV6T7OgptnfkVfEqrQ4dp0Il9uK5FdIj9bhHR1jsC 0oOFpV3KCgmfQcjz/4GkA0uCIfBaxz82Pst1UmDJdWVabzOcpk+W8VbugUw7NWdx gH2rTvJLLGfKs3o40rfWZ53sH/nBRud2rDtC2YexL37ZphBGhs89w3nHDyc7b8bh NsZR4CUwYYnr4Diob44aZuGy7B0SY+WDrAbM61n6n+lJXPXk2adlT5JJp4B7RVHC rO37PJm10TKoiAwQOFEzl6VXTKYa0iut0fywsOtJjrpDsS/n75CzKwU+On1nNlOW XVx/gv51nZsbv6UcDIpPAeTLsNbBGfHyDCiH3GSW8FOPmzxJ+9eNoYISLv8jZ7Qf MC7FKGtvlGsxXuaMyqegQzaYTXN6FqtHxidP9DMOvykVjbEouMJ7bz6NGxrEpB8U vt6+mHGgarw= =SC4X -----END PGP SIGNATURE----- Wed Jul 14 10:46:43 UTC 2021 I: Checking whether the package is not for us Wed Jul 14 10:46:44 UTC 2021 I: Starting 1st build on remote node ionos6-i386.debian.net. Wed Jul 14 10:46:44 UTC 2021 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Wed Jul 14 10:47:33 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 16 05:09:45 -12 2022 I: pbuilder-time-stamp: 1660669785 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [minc-tools_2.3.00+dfsg-6.dsc] I: copying [./minc-tools_2.3.00+dfsg.orig.tar.gz] I: copying [./minc-tools_2.3.00+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.VrCbo53q/trustedkeys.kbx': General error gpgv: Signature made Tue Dec 8 00:22:53 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./minc-tools_2.3.00+dfsg-6.dsc dpkg-source: info: extracting minc-tools in minc-tools-2.3.00+dfsg dpkg-source: info: unpacking minc-tools_2.3.00+dfsg.orig.tar.gz dpkg-source: info: unpacking minc-tools_2.3.00+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_mincedit-sensible-viewer.diff dpkg-source: info: applying build-with-libnifti dpkg-source: info: applying hdf5-1.10-support.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix_manpages.patch dpkg-source: info: applying fix-gcc10-build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/52775/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e1f1906c935a415696e7a0878732c828' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='52775' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/pbuilderrc_dnni --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/b1 --logfile b1/build.log minc-tools_2.3.00+dfsg-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Jun 21 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 15 03:48 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/52775/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev (>= 2.3), libnifti2-dev (>= 3.0.1-4~), libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on libminc-dev (>= 2.3); however: Package libminc-dev is not installed. pbuilder-satisfydepends-dummy depends on libnifti2-dev (>= 3.0.1-4~); however: Package libnifti2-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libice6{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp24{a} libkpathsea6{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libminc-dev{a} libminc2-5.2.0{a} libncurses6{a} libnetcdf-dev{a} libnetcdf18{a} libnghttp2-14{a} libnifti2-2{a} libnifti2-dev{a} libnifticdf-dev{a} libnifticdf2{a} libniftiio-dev{a} libniftiio2{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libprocps8{a} libpsl5{a} libptexenc1{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libtool{a} libuchardet0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libznz-dev{a} libznz3{a} libzzip-0-13{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} xdg-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libfl-dev libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lmodern lynx pkg-config pkgconf psmisc publicsuffix shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 87.2 MB of archives. After unpacking 287 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 flex i386 2.6.4-8 [434 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 tex-common all 6.16 [53.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 bison i386 2:3.7.5+dfsg-1 [1114 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.3+b1 [372 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-2 [139 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 fonts-lmodern all 2.004.5-6.1 [4540 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 hdf5-helpers i386 1.10.6+repack-4 [40.4 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libaec0 i386 1.0.4-1 [22.6 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libsz2 i386 1.0.4-1 [6820 B] Get: 61 http://deb.debian.org/debian bullseye/main i386 libaec-dev i386 1.0.4-1 [21.5 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libpixman-1-0 i386 0.40.0-1 [545 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.1-1 [310 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.1-1 [796 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libxcb-render0 i386 1.14-3 [112 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libxcb-shm0 i386 1.14-3 [102 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 libcairo2 i386 1.16.0-5 [746 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libcurl3-gnutls i386 7.74.0-1.3+b1 [368 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libcurl4-gnutls-dev i386 7.74.0-1.3+b1 [471 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libhdf5-103-1 i386 1.10.6+repack-4 [1156 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libhdf5-cpp-103-1 i386 1.10.6+repack-4 [148 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libhdf5-fortran-102 i386 1.10.6+repack-4 [114 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-100 i386 1.10.6+repack-4 [93.2 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-fortran-100 i386 1.10.6+repack-4 [58.3 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-cpp-100 i386 1.10.6+repack-4 [38.1 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libhdf5-dev i386 1.10.6+repack-4 [2586 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 x11-common all 1:7.7+22 [252 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libkpathsea6 i386 2020.20200327.54578-7 [176 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libnetcdf18 i386 1:4.7.4-1 [436 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libminc2-5.2.0 i386 2.4.03-3 [264 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libnetcdf-dev i386 1:4.7.4-1 [93.6 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libminc-dev i386 2.4.03-3 [73.8 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libznz3 i386 3.0.1-8 [14.0 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libnifti2-2 i386 3.0.1-8 [79.6 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libnifticdf2 i386 3.0.1-8 [51.8 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libnifticdf-dev i386 3.0.1-8 [63.9 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libniftiio2 i386 3.0.1-8 [62.3 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libniftiio-dev i386 3.0.1-8 [74.0 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libznz-dev i386 3.0.1-8 [14.3 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libnifti2-dev i386 3.0.1-8 [107 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libpaper1 i386 1.1.28+b1 [21.7 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libpaper-utils i386 1.1.28+b1 [18.6 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libptexenc1 i386 2020.20200327.54578-7 [65.1 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 libsynctex2 i386 2020.20200327.54578-7 [85.9 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 libteckit0 i386 2.5.10+ds1-3 [277 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libtexlua53 i386 2020.20200327.54578-7 [146 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 libtexluajit2 i386 2020.20200327.54578-7 [284 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 libxt6 i386 1:1.2.0-1 [195 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 libxpm4 i386 1:3.5.12-1 [50.9 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 libxaw7 i386 2:1.0.13-1.1 [210 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 libxi6 i386 2:1.7.10-1 [85.1 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 libzzip-0-13 i386 0.13.62-3.3 [57.6 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 t1utils i386 1.41-4 [62.3 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 texlive-binaries i386 2020.20200327.54578-7 [10.2 MB] Get: 126 http://deb.debian.org/debian bullseye/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 texlive-base all 2020.20210202-3 [20.8 MB] Get: 128 http://deb.debian.org/debian bullseye/main i386 texlive-latex-base all 2020.20210202-3 [1120 kB] Fetched 87.2 MB in 1s (91.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../001-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../003-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../005-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../006-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package flex. Preparing to unpack .../007-flex_2.6.4-8_i386.deb ... Unpacking flex (2.6.4-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package tex-common. Preparing to unpack .../010-tex-common_6.16_all.deb ... Unpacking tex-common (6.16) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../011-libncurses6_6.2+20201114-2_i386.deb ... Unpacking libncurses6:i386 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:i386. Preparing to unpack .../012-libprocps8_2%3a3.3.17-5_i386.deb ... Unpacking libprocps8:i386 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../013-procps_2%3a3.3.17-5_i386.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../014-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../015-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../016-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../017-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../021-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package bison. Preparing to unpack .../022-bison_2%3a3.7.5+dfsg-1_i386.deb ... Unpacking bison (2:3.7.5+dfsg-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../023-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../024-libicu67_67.1-7_i386.deb ... Unpacking libicu67:i386 (67.1-7) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../025-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../026-libarchive13_3.4.3-2+b1_i386.deb ... Unpacking libarchive13:i386 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../027-libbrotli1_1.0.9-2+b2_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../028-libsasl2-modules-db_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../029-libsasl2-2_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../030-libldap-2.4-2_2.4.57+dfsg-3_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../031-libnghttp2-14_1.43.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.43.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../032-libpsl5_0.21.0-1.2_i386.deb ... Unpacking libpsl5:i386 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../033-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../034-libssh2-1_1.9.0-2_i386.deb ... Unpacking libssh2-1:i386 (1.9.0-2) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../035-libcurl4_7.74.0-1.3+b1_i386.deb ... Unpacking libcurl4:i386 (7.74.0-1.3+b1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../036-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:i386. Preparing to unpack .../037-libjsoncpp24_1.9.4-4_i386.deb ... Unpacking libjsoncpp24:i386 (1.9.4-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../038-librhash0_1.4.1-2_i386.deb ... Unpacking librhash0:i386 (1.4.1-2) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../039-libuv1_1.40.0-2_i386.deb ... Unpacking libuv1:i386 (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../040-cmake_3.18.4-2_i386.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../041-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../042-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../043-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../044-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../045-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../046-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../047-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../048-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../049-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../050-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../051-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../052-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../053-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../054-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../055-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../056-fonts-lmodern_2.004.5-6.1_all.deb ... Unpacking fonts-lmodern (2.004.5-6.1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../057-hdf5-helpers_1.10.6+repack-4_i386.deb ... Unpacking hdf5-helpers (1.10.6+repack-4) ... Selecting previously unselected package libaec0:i386. Preparing to unpack .../058-libaec0_1.0.4-1_i386.deb ... Unpacking libaec0:i386 (1.0.4-1) ... 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Setting up libhdf5-103-1:i386 (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libhdf5-cpp-103-1:i386 (1.10.6+repack-4) ... Setting up bison (2:3.7.5+dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libcurl4:i386 (7.74.0-1.3+b1) ... Setting up libx11-6:i386 (2:1.7.1-1) ... Setting up libharfbuzz0b:i386 (2.7.4-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libhdf5-hl-100:i386 (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:i386 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up flex (2.6.4-8) ... Setting up libxpm4:i386 (1:3.5.12-1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libniftiio-dev:i386 (3.0.1-8) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libhdf5-hl-cpp-100:i386 (1.10.6+repack-4) ... Setting up libhdf5-fortran-102:i386 (1.10.6+repack-4) ... Setting up libxt6:i386 (1:1.2.0-1) ... Setting up libnetcdf18:i386 (1:4.7.4-1) ... Setting up cmake (3.18.4-2) ... Setting up libhdf5-hl-fortran-100:i386 (1.10.6+repack-4) ... Setting up libnifti2-dev (3.0.1-8) ... Setting up libfontconfig1:i386 (2.13.1-4.2) ... Setting up libxmu6:i386 (2:1.1.2-2+b3) ... Setting up libminc2-5.2.0:i386 (2.4.03-3) ... Setting up libxi6:i386 (2:1.7.10-1) ... Setting up debhelper (13.3.4) ... Setting up libxaw7:i386 (2:1.0.13-1.1) ... Setting up libcairo2:i386 (1.16.0-5) ... Setting up libhdf5-dev (1.10.6+repack-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.7.4-1) ... Setting up texlive-binaries (2020.20200327.54578-7) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libminc-dev (2.4.03-3) ... Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-latex-base (2020.20210202-3) ... Processing triggers for libc-bin (2.31-12) ... Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg' dh_auto_configure -- cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:24 (CMAKE_POLICY): The OLD behavior for policy CMP0026 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for tmpnam -- Looking for tmpnam - found -- Looking for tempnam -- Looking for tempnam - found -- Looking for strerror -- Looking for strerror - found -- Looking for popen -- Looking for popen - found -- Looking for fork -- Looking for fork - found -- Looking for vfork -- Looking for vfork - found -- Looking for fdopen -- Looking for fdopen - found -- Looking for strdup -- Looking for strdup - found -- Looking for getpwnam -- Looking for getpwnam - found -- Looking for select -- Looking for select - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for system -- Looking for system - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for include file sys/dir.h -- Looking for include file sys/dir.h - found -- Looking for include file sys/ndir.h -- Looking for include file sys/ndir.h - not found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file values.h -- Looking for include file values.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file vfork.h -- Looking for include file vfork.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Found BISON: /usr/bin/bison (found version "3.7.5") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_auto_build cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/depend make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/rawtominc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/rawtominc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample2.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample2.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal". [ 1%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal". cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l Scanning dependencies of target mincinfo Scanning dependencies of target rawtominc Scanning dependencies of target xfmconcat Scanning dependencies of target minccopy Scanning dependencies of target mincdump Scanning dependencies of target worldtovoxel Scanning dependencies of target mincstats Scanning dependencies of target mincexample2 Scanning dependencies of target mincblob Scanning dependencies of target mincconcat Scanning dependencies of target mincexpand Scanning dependencies of target minccmp Scanning dependencies of target minc_modify_header Scanning dependencies of target mincconvert Scanning dependencies of target mincmorph Scanning dependencies of target mincaverage Scanning dependencies of target mincextract make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/build make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 2%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o [ 3%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o [ 4%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccmp/minccmp.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c [ 5%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c [ 6%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o [ 7%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o [ 7%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c [ 8%] Building C object progs/CMakeFiles/minccopy.dir/minccopy/minccopy.c.o [ 8%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincextract/mincextract.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample2.c [ 8%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/mincmorph.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexpand/mincexpand.c [ 9%] Building C object progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c [ 10%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccopy/minccopy.c [ 11%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o [ 12%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o [ 13%] 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-Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal". make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 19%] Built target worldtovoxel [ 19%] Built target mincexpand Scanning dependencies of target mincgen make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 19%] Built target mincconvert [ 19%] Built target minccopy [ 19%] Built target xfmconcat make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color= [ 20%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/depend.internal". cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/vardata.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/vardata.c [ 21%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o Scanning dependencies of target invert_raw_image cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal". make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend [ 21%] Linking C executable minc_modify_header [ 22%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal". [ 23%] Linking C executable mincexample2 [ 24%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c [ 25%] Linking C executable mincinfo cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 [ 25%] Linking C executable mincblob [ 26%] Linking C executable minccmp cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 [ 27%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c [ 28%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/depend.internal". /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf Scanning dependencies of target mincreshape Scanning dependencies of target minclookup Scanning dependencies of target mincmakevector make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 29%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c [ 29%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c [ 29%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c [ 30%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o [ 31%] Linking C executable mincextract cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 [ 32%] Linking C executable mincaverage cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 32%] Built target minc_modify_header make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs 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Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal". Scanning dependencies of target xfminvert [ 32%] Built target mincinfo [ 32%] Built target mincexample2 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color= [ 33%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o [ 34%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/depend.internal". cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Scanning dependencies of target mincmath make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 35%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c [ 35%] Built target mincblob make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 35%] Built target minccmp Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal". Scanning dependencies of target mincmakescalar make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 35%] Built target mincaverage make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal". Scanning dependencies of target mincresample make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build [ 36%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakescalar/mincmakescalar.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/depend.internal". make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Scanning dependencies of target minctoraw make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake --color= [ 36%] Built target mincextract make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend [ 37%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o [ 38%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c [ 39%] Linking C executable invert_raw_image cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/depend.internal". Scanning dependencies of target mincwindow make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build [ 39%] Linking C executable mincconcat cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 39%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c [ 40%] Linking C executable mincmakevector cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal". Scanning dependencies of target mincsample [ 41%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 42%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 43%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c In file included from /usr/include/string.h:495, from /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:10: In function 'strncpy', inlined from 'yyparse' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:345:13: /usr/include/i386-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c: In function 'yyparse': /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:342:20: note: length computed here 342 | size_t len = strlen(termstring); | ^~~~~~~~~~~~~~~~~~ [ 44%] Linking C executable xfminvert cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 44%] Linking C executable rawtominc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 44%] Built target invert_raw_image make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake --color= [ 44%] Built target mincconcat make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= [ 45%] Linking C executable mincwindow [ 46%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/depend.internal". Scanning dependencies of target mincexample1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 46%] Built target mincmakevector Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal". /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf Scanning dependencies of target voxeltoworld make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 46%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample1.c [ 48%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o [ 48%] [BISON][gram] Building parser with bison 3.7.5 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/gram.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 49%] Linking C executable minclookup cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 [ 50%] Linking C executable mincmakescalar cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 50%] Linking C executable minctoraw cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 51%] Linking C executable mincdump cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 51%] Built target xfminvert make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal". Scanning dependencies of target transformtags make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 52%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o [ 53%] Linking C executable mincmath cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 [ 53%] Built target rawtominc make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal". Scanning dependencies of target acr_nema make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 54%] Linking C executable voxeltoworld [ 54%] Built target mincwindow cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= [ 54%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal". Scanning dependencies of target ecattominc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function 'create_output_file.constprop': /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~ /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~~~~~ In file included from /usr/include/stdio.h:867, from /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:207: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 266 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 55%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c [ 55%] Built target minclookup make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color= [ 56%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o [ 56%] Built target mincmakescalar cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal". make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Scanning dependencies of target nii2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal". Scanning dependencies of target minctoecat make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 56%] Built target minctoraw make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color= [ 57%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c [ 57%] Built target mincdump make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend [ 58%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal". Scanning dependencies of target mnc2nii make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build [ 59%] Linking C executable mincexample1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 [ 59%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/depend.internal". cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgenyy.c Scanning dependencies of target upet2mnc [ 60%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 61%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 62%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c [ 62%] Built target mincmath [ 63%] Linking C executable transformtags cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 [ 64%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c [ 64%] Linking C executable mincsample cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 65%] [FLEX][lex] Building scanner with flex 2.6.4 cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: note: in expansion of macro 'VERSIONSTR' 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c: In function 'upet_to_minc': /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro 'VERSIONSTR' 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c: In function 'main': /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:736:31: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 736 | printf("# of voxels %ld\n", nii_ptr->nvox); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:743:23: warning: passing argument 3 of 'restructure_array' from incompatible pointer type [-Wincompatible-pointer-types] 743 | nii_lens, | ^~~~~~~~ | | | long unsigned int * In file included from /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:8: /usr/include/restructure.h:13:37: note: expected 'const size_t *' {aka 'const unsigned int *'} but argument is of type 'long unsigned int *' 13 | const size_t *lengths_perm, | ~~~~~~~~~~~~~~^~~~~~~~~~~~ cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal". [ 65%] Built target voxeltoworld [ 66%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c Scanning dependencies of target minccalc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 66%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c [ 67%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c [ 67%] Built target mincexample1 [ 67%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc 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'/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 70%] Linking C executable mincmorph [ 70%] Linking C executable mincreshape cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 [ 70%] Built target transformtags /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz 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-I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 71%] Built target mincsample [ 72%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. 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'/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 73%] Built target mincstats make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 74%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/scalar.c [ 74%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c [ 75%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o [ 75%] Built target mincreshape cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu 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-I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/vector.c [ 77%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 78%] Linking C executable nii2mnc [ 78%] Built target mincmorph cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake 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CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 [ 80%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio [ 80%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o [ 81%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/gram.c [ 82%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c [ 83%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c [ 84%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c [ 85%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c [ 85%] Linking C executable upet2mnc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 [ 86%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c [ 87%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/message.c /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 88%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 88%] Built target nii2mnc [ 88%] Built target mnc2nii [ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c [ 88%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c [ 88%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c [ 89%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c: In function 'check_table_integrity': /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c:179:72: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] 179 | (void) fprintf(stderr, "Internal error: VR table size is wrong! %lu %lu %d\n", sizeof(VR_table), sizeof(VR_table[0]), ACR_VR_NUM_TYPES); | ~~^ ~~~~~~~~~~~~~~~~ | | | | | unsigned int | long unsigned int | %u /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c:179:76: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'unsigned int' [-Wformat=] 179 | (void) fprintf(stderr, "Internal error: VR table size is wrong! %lu %lu %d\n", sizeof(VR_table), sizeof(VR_table[0]), ACR_VR_NUM_TYPES); | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long unsigned int unsigned int | %u [ 90%] Linking C executable minctoecat cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 90%] Built target upet2mnc /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:21: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~ /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:20: note: assuming directive output of 22 bytes 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 90%] Built target minctoecat [ 91%] Linking C executable ecattominc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 91%] Linking C executable minccalc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 91%] Built target ecattominc [ 92%] Linking C static library libacr_nema.a cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o /usr/bin/ranlib libacr_nema.a [ 92%] Built target minccalc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 92%] Built target acr_nema make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake --color= Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/depend.internal". Dependee "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/depend.internal". Scanning dependencies of target dcm2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 93%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c [ 94%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o [ 94%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c [ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o [ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:168:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 168 | #define VERSION_STRING "2.01.02 built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro 'VERSION_STRING' 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_cdexport_file': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1019 | fread(tst_str, 1, DICM_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_ima_file': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1042:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1042 | fread(mfg_str, 1, IMA_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'use_the_files': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 980 | fscanf(fp, "%s", pipe_output_name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function 'setup_minc_variables': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1084 | fread(data, 1, length, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Linking C executable mincgen cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 99%] Built target mincgen [100%] Linking C executable mincresample cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [100%] Built target mincresample [100%] Linking C executable dcm2mnc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf libacr_nema.a -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [100%] Built target dcm2mnc make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' dh_auto_test cd obj-i686-linux-gnu && make -j18 test ARGS\+=-j18 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j18 Test project /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu Start 1: mincinfo-test Start 2: mincstats-test Start 3: mincaverage-test Start 4: minccalc-test Start 5: mincresample-test Start 6: mincreshape-test 1/6 Test #5: mincresample-test ................ 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Passed 0.23 sec 100% tests passed, 0 tests failed out of 6 Total Test time (real) = 0.23 sec make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: 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/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincedit.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincexpand.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincextract.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincgen.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincheader.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincinfo.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minclookup.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakescalar.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakevector.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmath.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minc_modify_header.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincresample.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincreshape.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincsample.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincstats.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoraw.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/invert_raw_image.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincview.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincwindow.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/rawtominc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/transformtags.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfm2def.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmconcat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmflip.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfminvert.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/dcm2mnc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/ecattominc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoecat -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mnc2nii -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/nii2mnc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/upet2mnc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/dcm2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/ecattominc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/upet2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoecat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mnc2nii.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/nii2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/vff2mnc.1 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg' cd debian/minc-tools && mkdir -p usr/share && mv usr/man usr/share dh_link /usr/share/man/man1/voxeltoworld.1 \ /usr/share/man/man1/worldtovoxel.1 for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dwz: debian/minc-tools/usr/bin/dcm2mnc: DWARF compression not beneficial - old size 156693 new size 157280 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-6_i386.deb'. dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-6_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../minc-tools_2.3.00+dfsg-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/52775 and its subdirectories I: Current time: Tue Aug 16 05:10:32 -12 2022 I: pbuilder-time-stamp: 1660669832 Wed Jul 14 10:47:33 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Wed Jul 14 10:47:33 UTC 2021 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Wed Jul 14 10:54:34 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. Wed Jul 14 10:54:34 UTC 2021 I: minc-tools_2.3.00+dfsg-6_i386.changes: Format: 1.8 Date: Tue, 08 Dec 2020 13:04:16 +0100 Source: minc-tools Binary: minc-tools minc-tools-dbgsym Architecture: i386 Version: 2.3.00+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: minc-tools - MNI medical image format tools Closes: 976825 Changes: minc-tools (2.3.00+dfsg-6) unstable; urgency=medium . * Versioned Build-Depends: libnifti2-dev (>= 3.0.1-4~) Closes: #976825 Checksums-Sha1: 25a628231e73e2f1348e4c333e6ef40478422728 639208 minc-tools-dbgsym_2.3.00+dfsg-6_i386.deb 4c3eeb22e9c1cdb8bcaac199cd20c91cb1a039e8 7982 minc-tools_2.3.00+dfsg-6_i386.buildinfo 188b6c34a947b74d98fab298f759aa67b8df3936 406240 minc-tools_2.3.00+dfsg-6_i386.deb Checksums-Sha256: 7c7cefba5d4f37ddb128ee86c3965ebf37044348499d9778fcbd9cd2b063283a 639208 minc-tools-dbgsym_2.3.00+dfsg-6_i386.deb 622165c04f8907f5bd55e52c3f361c1eb41f29910c6804c5b867c3b490ab1518 7982 minc-tools_2.3.00+dfsg-6_i386.buildinfo fbb7038542a8e32b167fa9fc34f7947fa43cee14ece4a98696250f40260d3f90 406240 minc-tools_2.3.00+dfsg-6_i386.deb Files: cb9cc2393704180e89905c7d39771c52 639208 debug optional minc-tools-dbgsym_2.3.00+dfsg-6_i386.deb 2cc44082681f34ded32ba069365ac131 7982 science optional minc-tools_2.3.00+dfsg-6_i386.buildinfo 2f664a976692137a285c3ed36544b18f 406240 science optional minc-tools_2.3.00+dfsg-6_i386.deb Wed Jul 14 10:54:35 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/minc-tools_2.3.00+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/minc-tools_2.3.00+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/minc-tools_2.3.00+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/b1/minc-tools_2.3.00+dfsg-6_i386.changes /srv/reproducible-results/rbuild-debian/tmp.Q2btckyErO/b2/minc-tools_2.3.00+dfsg-6_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.332s) 0.332s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.030s) 0.030s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Jul 14 10:54:37 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Jul 14 10:54:37 UTC 2021 I: minc-tools from bullseye built successfully and reproducibly on i386. Wed Jul 14 10:54:38 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Jul 14 10:54:38 UTC 2021 I: Submitting 12K b1/minc-tools_2.3.00+dfsg-6_i386.buildinfo.asc Wed Jul 14 10:54:39 UTC 2021 I: Submitting 12K b2/minc-tools_2.3.00+dfsg-6_i386.buildinfo.asc Wed Jul 14 10:54:40 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jul 14 10:54:40 UTC 2021 I: Done submitting .buildinfo files. Wed Jul 14 10:54:40 UTC 2021 I: Removing signed minc-tools_2.3.00+dfsg-6_i386.buildinfo.asc files: removed './b1/minc-tools_2.3.00+dfsg-6_i386.buildinfo.asc' removed './b2/minc-tools_2.3.00+dfsg-6_i386.buildinfo.asc'