Fri May 31 00:26:01 UTC 2024 I: starting to build pbcopper/unstable/amd64 on jenkins on '2024-05-31 00:25' Fri May 31 00:26:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_30/10317/console.log Fri May 31 00:26:01 UTC 2024 I: Downloading source for unstable/pbcopper=2.3.0+dfsg-2 --2024-05-31 00:26:01-- http://deb.debian.org/debian/pool/main/p/pbcopper/pbcopper_2.3.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2379 (2.3K) [text/prs.lines.tag] Saving to: ‘pbcopper_2.3.0+dfsg-2.dsc’ 0K .. 100% 238M=0s 2024-05-31 00:26:01 (238 MB/s) - ‘pbcopper_2.3.0+dfsg-2.dsc’ saved [2379/2379] Fri May 31 00:26:01 UTC 2024 I: pbcopper_2.3.0+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbcopper Binary: libpbcopper2.3.0, libpbcopper-dev Architecture: any-amd64 arm64 loong64 mips64el ppc64el s390x ia64 ppc64 riscv64 sparc64 alpha Version: 2.3.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/pbcopper Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pbcopper Vcs-Git: https://salsa.debian.org/med-team/pbcopper.git Build-Depends: debhelper-compat (= 13), d-shlibs, meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev, libsimde-dev Package-List: libpbcopper-dev deb libdevel optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,alpha libpbcopper2.3.0 deb libs optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,alpha Checksums-Sha1: 7f03fb0c39532e685be6893190fbd1556a45eb0b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz a04cccf7a845e38a7f199658bee72497e2bcf2af 7728 pbcopper_2.3.0+dfsg-2.debian.tar.xz Checksums-Sha256: 778862e58f051159b8b35bdae7d3361011a1cbc674423e6a23992b094f76f162 736204 pbcopper_2.3.0+dfsg.orig.tar.xz 249fa94ccac19d58f1261847b2e11aa8c4c167b45ed7283ac8c772d18860dc6e 7728 pbcopper_2.3.0+dfsg-2.debian.tar.xz Files: 2dad359fad146c0886f57c921055a49b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz accfafab8a2cb6ccd40e84c7c839a6bd 7728 pbcopper_2.3.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWysg4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEl5g//WDoifHNHJ3wccdR/lViZaaEquYyg2xOh IHvFdqrigx6MfvHceb9x+Wue43YOIzkGy7eSGmCnfHrFj5tg1T7mqjeaIfmmlAiw g98gevE+iFJNqaF1PI+26gqMtuWo/M5UuzCQKHy18lBoglT9S0KwOyRd9KSzoBWL kSpvRNc7c9bFNpDUChgw53ki14BEL5PvIV/khC2jHbzlbT/aiQOkcJHP85VgW82U /l2WraG+okZ9IxlSuYtytE0c2tcuqwaInsXWGUftuobHwfqxrmsG8ioJ3qAxE7HM 6pi0SR1Fh3BiV4EBAYL92wlzd+g7Zo/+LW5bZ7HZzLQGseoGnI9UHA+d9msU67n3 e+8o2fW/KnCEDtAnr1QEBDyHsIdswlY0Kbh5mHM1TB9so660l+yZFp6kyt3dJXVJ Z2x7JocExboY58zpabAFEnUNuPLsYetZP8hqxzABu+b+FTzRMaa2ZJc9Lj/r4GT3 ebNrif0ddpEEVJmMmNrzj01A2Nm7yEPnd7BxzRhyS5StiBctj8OUj01IUu9XQxap 90tk1HE0Yu/XE+jyiFDfh197WJaxC1BXe3A8dV0+hX2iSxveUnhuchyCFJnf16NW wpczT07es1cDxve9Dx1QdtBmrpkzHlhiyq/4/32Lx8/auzoVpQI+Q+8xuPUhTj+V N7LmDZAa+9M= =LTdi -----END PGP SIGNATURE----- Fri May 31 00:26:01 UTC 2024 I: Checking whether the package is not for us Fri May 31 00:26:01 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri May 31 00:26:01 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri May 31 00:28:02 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 2 18:49:03 -12 2025 I: pbuilder-time-stamp: 1751525343 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbcopper_2.3.0+dfsg-2.dsc] I: copying [./pbcopper_2.3.0+dfsg.orig.tar.xz] I: copying [./pbcopper_2.3.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 25 19:10:06 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbcopper_2.3.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting pbcopper in pbcopper-2.3.0+dfsg dpkg-source: info: unpacking pbcopper_2.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pbcopper_2.3.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde.patch dpkg-source: info: applying static+shared_lib.patch dpkg-source: info: applying skip_test_Parallel_FireAndForget.patch dpkg-source: info: applying gcc-13 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/725458/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ccf62c1a126c49848e4966d2d9a8bf0c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='725458' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uM6PUohm/pbuilderrc_lXyW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uM6PUohm/b1 --logfile b1/build.log pbcopper_2.3.0+dfsg-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 30 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/725458/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19716 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 55.0 MB of archives. After unpacking 341 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-4 [95.7 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-4 [148 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.29.3-1 [2167 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.29.3-1+b1 [10.7 MB] Get: 54 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.106 [10.9 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 61 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 googletest all 1.14.0-1 [512 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-3 [10.6 MB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 70 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.14.0-1+b1 [250 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-1 [465 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 ninja-build amd64 1.12.1-1 [142 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 meson all 1.4.1-1 [604 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Fetched 55.0 MB in 10s (5637 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbcopper-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbcopper_2.3.0+dfsg-2_source.changes dpkg-buildpackage: info: source package pbcopper dpkg-buildpackage: info: source version 2.3.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build dh_auto_clean -O--builddirectory=build dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build dh_auto_configure -O--builddirectory=build cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.4.1 Source dir: /build/reproducible-path/pbcopper-2.3.0+dfsg Build dir: /build/reproducible-path/pbcopper-2.3.0+dfsg/build Build type: native build ../meson.build:2: WARNING: Keyword argument "default_options" defined multiple times. WARNING: This will be an error in future Meson releases. Project name: pbcopper Project version: 2.3.0 C compiler for the host machine: cc (gcc 13.2.0 "cc (Debian 13.2.0-25) 13.2.0") C linker for the host machine: cc ld.bfd 2.42 C++ compiler for the host machine: c++ (gcc 13.2.0 "c++ (Debian 13.2.0-25) 13.2.0") C++ linker for the host machine: c++ ld.bfd 2.42 Host machine cpu family: x86_64 Host machine cpu: x86_64 Compiler for C++ supports arguments -Wduplicated-cond: YES Compiler for C++ supports arguments -Wduplicated-branches: YES Compiler for C++ supports arguments -Wlogical-op: YES Compiler for C++ supports arguments -Wrestrict: YES Compiler for C++ supports arguments -Wdouble-promotion: YES Compiler for C++ supports arguments -Wshadow: YES Compiler for C++ supports arguments -Wformat=1: YES Compiler for C supports arguments -Wc++-compat: YES Compiler for C supports arguments -Wno-unused-parameter: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C supports arguments -Wno-sign-compare: YES Compiler for C supports arguments -Wno-unused-but-set-variable: YES Compiler for C supports arguments -msse4.1: YES Run-time dependency threads found: YES Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency Boost found: YES 1.83.0 (/usr/include) Configuring PbcopperVersion.cpp using configuration Configuring LibraryVersion.h using configuration Program tools/check-formatting found: YES (/build/reproducible-path/pbcopper-2.3.0+dfsg/tools/check-formatting) Run-time dependency GTest found: YES 1.14.0 Configuring PbcopperTestData.h using configuration Build targets in project: 5 pbcopper 2.3.0 User defined options buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir : /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload python.bytecompile: -1 Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build -O--builddirectory=build cd build && LC_ALL=C.UTF-8 ninja -j42 -v [1/182] /usr/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src/utility @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [2/182] /usr/bin/meson --internal vcstagger ../src/LibraryGitHash.h.in src/LibraryGitHash.h 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [3/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -MF src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o.d -o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -c src/utility/PbcopperGitHash.cpp [4/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -MF tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -c ../tests/src/data/test_Accuracy.cpp [5/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_Contains.cpp.o -MF tests/pbcopper_test.p/src_container_test_Contains.cpp.o.d -o tests/pbcopper_test.p/src_container_test_Contains.cpp.o -c ../tests/src/container/test_Contains.cpp [6/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o -MF tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o.d -o tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o -c ../tests/src/container/test_CapacityPointer.cpp [7/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o -MF tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o.d -o tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o -c ../tests/src/cuda/test_AsciiConversion.cpp [8/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -c ../src/align/AlignConfig.cpp [9/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -c ../tests/src/align/test_EdlibAlign.cpp [10/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -MF tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o.d -o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -c ../tests/src/align/test_GlobalLocalAlignment.cpp [11/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o -c ../src/align/ChainSeedsConfig.cpp [12/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o -c ../tests/src/cli2/test_PositionalArgumentTranslator.cpp [13/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_DNAString.cpp.o -MF tests/pbcopper_test.p/src_container_test_DNAString.cpp.o.d -o tests/pbcopper_test.p/src_container_test_DNAString.cpp.o -c ../tests/src/container/test_DNAString.cpp [14/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Frames.cpp.o -MF tests/pbcopper_test.p/src_data_test_Frames.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Frames.cpp.o -c ../tests/src/data/test_Frames.cpp [15/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -c ../tests/src/dagcon/test_Alignment.cpp [16/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o -MF src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o.d -o src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o -c ../src/LibraryInfo.cpp [17/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o -MF tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o.d -o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o -c ../tests/src/container/test_BitConversion.cpp [18/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o -MF tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o.d -o tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o -c ../tests/src/container/test_RHUnordered.cpp [19/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -c ../tests/src/align/test_BandedChainAlign.cpp [20/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o -c ../tests/src/cli2/test_OptionValue.cpp [21/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 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../src/cli2/OptionValue.cpp [67/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o -c ../src/data/RSMovieName.cpp [68/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -MF tests/pbcopper_test.p/src_data_test_Cigar.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -c ../tests/src/data/test_Cigar.cpp [69/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o -MF src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o.d -o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o -c ../src/logging/LogLevel.cpp [70/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict 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../src/data/Cigar.cpp [72/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o -MF src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o.d -o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o -c ../src/parallel/ThreadCount.cpp [73/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_InterfaceHelpPrinter.cpp [74/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o -c ../src/cli2/HelpMetrics.cpp [75/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o -c ../src/pbmer/Kmer.cpp [76/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o -c ../src/data/QualityValues.cpp [77/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o -c ../src/data/FrameEncoders.cpp [78/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o -c ../src/data/ReadId.cpp [79/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o -c ../src/cli2/Results.cpp [80/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -c ../tests/src/algorithm/test_LSHIndex.cpp In file included from /usr/include/string.h:548, from /usr/include/c++/13/cstring:42, from ../include/pbcopper/third-party/robin_hood/robin_hood.h:43, from ../include/pbcopper/container/RHUnordered.h:6, from ../include/pbcopper/container/Unordered.h:6, from ../include/pbcopper/algorithm/KMerIndex.h:6, from ../tests/src/algorithm/test_LSHIndex.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘KeyT PacBio::Algorithm::LSHIndex::hashMemory(const T&, int64_t) const [with T = long unsigned int; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:630:24, inlined from ‘KeyT PacBio::Algorithm::LSHIndex::hashIndex(const Sketch&, int64_t, int64_t) const [with Sketch = std::vector >; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:678:30: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)’ writing 8 or more bytes into a region of size 4 overflows the destination [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [81/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o -c ../src/cli2/MultiToolInterfaceHelpPrinter.cpp [82/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Read.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Read.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o -c ../src/data/Read.cpp [83/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -MF tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -c ../tests/src/data/test_MappedRead.cpp [84/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o -c ../src/pbmer/Parser.cpp [85/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong 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-Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -c ../tests/src/utility/test_Stopwatch.cpp [162/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 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src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o -c ../src/utility/Alarm.cpp [166/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -MF tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp [167/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp [168/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -MF tests/pbcopper_test.p/src_qgram_test_Index.cpp.o.d -o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -c ../tests/src/qgram/test_Index.cpp [169/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp ../tests/src/parallel/test_FireAndForgetIndexed.cpp: In member function ‘virtual void Parallel_FireAndForgetIndexed_strings_Test::TestBody()’: ../tests/src/parallel/test_FireAndForgetIndexed.cpp:15:25: warning: unused variable ‘numElements’ [-Wunused-variable] 15 | static const size_t numElements = 10000; | ^~~~~~~~~~~ ../tests/src/parallel/test_FireAndForgetIndexed.cpp:28:10: warning: variable ‘Submit’ set but not used [-Wunused-but-set-variable] 28 | auto Submit = [&vec](size_t index, size_t data) { vec[index] += data; }; | ^~~~~~ [170/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp [171/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -MF tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp [172/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp [173/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -MF tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -c ../tests/src/utility/test_PartitionElements.cpp [174/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -c ../tests/src/utility/test_StringUtils.cpp [175/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -c ../tests/src/utility/test_MoveInsert.cpp [176/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o -c ../src/align/PairwiseAlignment.cpp [177/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp [178/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o -c ../src/poa/PoaGraphImpl.cpp [179/182] c++ -o src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,-soname,libpbcopper.so.2.3.0 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread [180/182] /usr/bin/meson --internal symbolextractor /build/reproducible-path/pbcopper-2.3.0+dfsg/build src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/libpbcopper.so.2.3.0.symbols [181/182] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o [182/182] c++ -o tests/pbcopper_test tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o tests/pbcopper_test.p/src_align_test_Alignment.cpp.o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o tests/pbcopper_test.p/src_container_test_BitContainer.cpp.o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o tests/pbcopper_test.p/src_container_test_BitmaskContainer.cpp.o tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o tests/pbcopper_test.p/src_container_test_Contains.cpp.o tests/pbcopper_test.p/src_container_test_DNAString.cpp.o tests/pbcopper_test.p/src_container_test_Unordered.cpp.o tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o tests/pbcopper_test.p/src_cli2_test_Interface.cpp.o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o tests/pbcopper_test.p/src_data_test_Frames.cpp.o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o tests/pbcopper_test.p/src_data_test_Interval.cpp.o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o tests/pbcopper_test.p/src_data_test_Read.cpp.o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o tests/pbcopper_test.p/src_data_test_SNR.cpp.o tests/pbcopper_test.p/src_json_test_JSON.cpp.o tests/pbcopper_test.p/src_library_test_Library.cpp.o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o tests/pbcopper_test.p/src_reports_test_Report.cpp.o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 '-Wl,-rpath,$ORIGIN/../src' -Wl,-rpath-link,/build/reproducible-path/pbcopper-2.3.0+dfsg/build/src -Wl,--start-group src/libpbcopper.so.2.3.0 /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -Wl,--end-group -pthread debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' cd build && meson test --no-rebuild --print-errorlogs 1/2 pbcopper formatting check OK 0.01s 2/2 pbcopper gtest unittests OK 9.78s Ok: 2 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-logs/testlog.txt make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install -O--builddirectory=build cd build && DESTDIR=/build/reproducible-path/pbcopper-2.3.0\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [1/9] Generating src/LibraryGitHash.h with a custom command [2/8] Generating src/utility/PbcopperGitHash.cpp with a custom command [2/3] Installing files. Installing src/libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu Installing src/libpbcopper.a to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/LibraryInfo.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/PbcopperConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/Heteroduplex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/KMerIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/LSHIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/internal/HeteroduplexUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AffineAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AlignConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/BandedChainAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeedsConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/EdlibAlign.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/FindSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/GlobalLocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LinearAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/PairwiseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/SparseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignBlocks.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw_cpp.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/CLI.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Interface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/MultiToolInterface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Option.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionGroup.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/PositionalArgument.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Result.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Results.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/ResultsHandler.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Tool.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/VersionPrinterCallback.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/BuiltinOptions.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/CommandLineParser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HelpMetrics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HiddenOptionMode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/VersionPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitmaskContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/CapacityPointer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Contains.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/DNAString.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/RHUnordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Unordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/AsciiConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/Cuda.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/Alignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/AlignmentGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Accuracy.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CCSTag.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Cigar.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CigarOperation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Clipping.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameCodec.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameEncoders.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Frames.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/GenomicInterval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Interval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/IntervalTree.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/LocalContextFlags.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MappedRead.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Orientation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Position.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValues.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Read.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadId.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSMovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/SNR.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Strand.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Zmw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ClippingImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/MovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/RSMovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/json/JSON.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/json Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Bundle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Info.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/Logging.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogField.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogLevel.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogMessage.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/ConfusionMatrix.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/FishersExact.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForget.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForgetIndexed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/ThreadCount.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/WorkQueue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Bubble.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Dbg.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DbgNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DnaBit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Kmer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Mers.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Parser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/SparseHaplotype.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaConsensus.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/RangeFinder.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/SparsePoa.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/reports/Report.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/reports Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/Index.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHits.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Hashing-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Index-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/edlib.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/htslib/kfunc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/htslib Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/kxsort/kxsort.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/kxsort Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/kalloc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/ksw2.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/MPMCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/SPSCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/robin_hood/robin_hood.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/robin_hood Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/sparc/sparc.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/sparc Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Alarm.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Base64.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Deleters.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FastMod.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FileUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Intrinsics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MemoryConsumption.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MinMax.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveAppend.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveInsert.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/OStreamRedirect.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Overloaded.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PartitionElements.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PbcopperVersion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Random.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SafeSubtract.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SequenceUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Shuffle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Ssize.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Stopwatch.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/StringUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/TimeReporter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Unused.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/FileUtils-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/Stopwatch-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/third-party/json.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-private/pbcopper.pc to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig Installing symlink pointing to libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.so debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libpbcopper2.3.0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.a debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.so debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.so.2.3.0 debian/libpbcopper2.3.0/usr/lib/x86_64-linux-gnu PKGDEV=libpbcopper-dev PKGSHL=libpbcopper2.3.0 install -d -m 755 debian/libpbcopper-dev/usr mv debian/tmp/usr/include debian/libpbcopper-dev/usr install -d -m 755 debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -a -O--builddirectory=build dh_strip -a -O--builddirectory=build dh_makeshlibs -a -O--builddirectory=build dh_shlibdeps -a -O--builddirectory=build dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dpkg-gencontrol: warning: Depends field of package libpbcopper-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'libpbcopper2.3.0' in '../libpbcopper2.3.0_2.3.0+dfsg-2_amd64.deb'. dpkg-deb: building package 'libpbcopper2.3.0-dbgsym' in '../libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_amd64.deb'. dpkg-deb: building package 'libpbcopper-dev' in '../libpbcopper-dev_2.3.0+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pbcopper_2.3.0+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../pbcopper_2.3.0+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/725458 and its subdirectories I: Current time: Wed Jul 2 18:51:02 -12 2025 I: pbuilder-time-stamp: 1751525462 Fri May 31 00:28:03 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri May 31 00:28:03 UTC 2024 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri May 31 00:39:14 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri May 31 00:39:14 UTC 2024 I: pbcopper_2.3.0+dfsg-2_amd64.changes: Format: 1.8 Date: Thu, 25 Jan 2024 20:05:13 +0100 Source: pbcopper Binary: libpbcopper-dev libpbcopper2.3.0 libpbcopper2.3.0-dbgsym Architecture: amd64 Version: 2.3.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libpbcopper-dev - data structures, algorithms, and utilities for C++ applications - libpbcopper2.3.0 - data structures, algorithms, and utilities for C++ applications Closes: 1060791 Changes: pbcopper (2.3.0+dfsg-2) unstable; urgency=medium . * Build-Depends: s/libboost1.81-dev/libboost-dev/ Closes: #1060791 Checksums-Sha1: 5728379d633f61684fe02ad4ba2db7f18ce218cb 1092220 libpbcopper-dev_2.3.0+dfsg-2_amd64.deb 50ee76553073f80433677fb91bbbc06c970e6797 13812020 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_amd64.deb 787092bd8ee9f74c39de721fa195f34fdd644f8f 753360 libpbcopper2.3.0_2.3.0+dfsg-2_amd64.deb accb62366b2ce703b575f502b0538973a05b6af8 7467 pbcopper_2.3.0+dfsg-2_amd64.buildinfo Checksums-Sha256: 8837e0f8dc228f0866f85cbda92025bde2126c13c05c57d4b314758e39458f49 1092220 libpbcopper-dev_2.3.0+dfsg-2_amd64.deb 75ab6863c7a1a3e2d9cc9fd64b0066a60addcc57f11a669465f9ee4ffdade749 13812020 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_amd64.deb 8ea971ba01adf035a27ea0890c2798f49b9c3e0a66ba4275d40c55d6c38e37b3 753360 libpbcopper2.3.0_2.3.0+dfsg-2_amd64.deb cb41d1e3b7eb8a8ead6e204865836eb68fb72aee11e41d81a89e18f1025505e5 7467 pbcopper_2.3.0+dfsg-2_amd64.buildinfo Files: f5ec170230e623c201cf8a95af49ed17 1092220 libdevel optional libpbcopper-dev_2.3.0+dfsg-2_amd64.deb 3b1f54bf5efad90acb7b5daf37677a0e 13812020 debug optional libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_amd64.deb cdc281404a287e32e356a75125df1921 753360 libs optional libpbcopper2.3.0_2.3.0+dfsg-2_amd64.deb 871bc48e496744c40cc093980ac3c2cf 7467 science optional pbcopper_2.3.0+dfsg-2_amd64.buildinfo Fri May 31 00:39:16 UTC 2024 I: diffoscope 268 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_30-10317.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.uM6PUohm/pbcopper_2.3.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.uM6PUohm/pbcopper_2.3.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.uM6PUohm/pbcopper_2.3.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.uM6PUohm/b1/pbcopper_2.3.0+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.uM6PUohm/b2/pbcopper_2.3.0+dfsg-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.611s) 0.611s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.180s) 0.180s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.025s CPU time consumed: 1.025s Fri May 31 00:39:17 UTC 2024 I: diffoscope 268 found no differences in the changes files, and a .buildinfo file also exists. Fri May 31 00:39:17 UTC 2024 I: pbcopper from unstable built successfully and reproducibly on amd64. Fri May 31 00:39:19 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 31 00:39:19 UTC 2024 I: Submitting 12K b1/pbcopper_2.3.0+dfsg-2_amd64.buildinfo.asc Fri May 31 00:39:21 UTC 2024 I: Submitting 12K b2/pbcopper_2.3.0+dfsg-2_amd64.buildinfo.asc Fri May 31 00:39:24 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 31 00:39:24 UTC 2024 I: Done submitting .buildinfo files. Fri May 31 00:39:24 UTC 2024 I: Removing signed pbcopper_2.3.0+dfsg-2_amd64.buildinfo.asc files: removed './b1/pbcopper_2.3.0+dfsg-2_amd64.buildinfo.asc' removed './b2/pbcopper_2.3.0+dfsg-2_amd64.buildinfo.asc'