Mon Apr 29 01:49:52 UTC 2024 I: starting to build python-cobra/unstable/armhf on jenkins on '2024-04-29 01:49' Mon Apr 29 01:49:52 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_34/5545/console.log Mon Apr 29 01:49:52 UTC 2024 I: Downloading source for unstable/python-cobra=0.29.0-2 --2024-04-29 01:49:53-- http://deb.debian.org/debian/pool/main/p/python-cobra/python-cobra_0.29.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3121 (3.0K) [text/prs.lines.tag] Saving to: ‘python-cobra_0.29.0-2.dsc’ 0K ... 100% 387M=0s 2024-04-29 01:49:53 (387 MB/s) - ‘python-cobra_0.29.0-2.dsc’ saved [3121/3121] Mon Apr 29 01:49:53 UTC 2024 I: python-cobra_0.29.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-cobra Binary: python3-cobra, python-cobra-data Architecture: any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all Version: 0.29.0-2 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://opencobra.github.io/cobrapy/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-cobra Vcs-Git: https://salsa.debian.org/med-team/python-cobra.git Testsuite: autopkgtest Testsuite-Triggers: python3-jsonschema, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-sbml5, python3-scipy, quilt Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest , python3-pytest-benchmark , python3-pytest-mock , python3-jsonschema , libsbml5-dev , python3-matplotlib , python3-appdirs , python3-diskcache , python3-httpx , python3-pydantic , python3-rich Package-List: python-cobra-data deb python optional arch=all python3-cobra deb python optional arch=any-amd64,arm64,armel,armhf,any-i386,mips,mips64el,mipsel,ppc64el,alpha,hppa,m68k,powerpc,powerpcspe,ppc64,sh4,sparc64,x32 Checksums-Sha1: f28e39c60745c6b7a2c09aa4d9abd39b82bf2b76 3649668 python-cobra_0.29.0.orig.tar.gz a8382a19d158d8f0a674515d3b3feb3ddec7bce6 8884 python-cobra_0.29.0-2.debian.tar.xz Checksums-Sha256: b334b514f0253dfd1f3e1860b687c76005aae55ed98a213166c401b5780fcbc2 3649668 python-cobra_0.29.0.orig.tar.gz df668f6702f022b4e18f19dd75ae71dfcae3085ad92d0622d7b2fb6f8650766a 8884 python-cobra_0.29.0-2.debian.tar.xz Files: d31eb29abffaa85b8db2a936d21bd42f 3649668 python-cobra_0.29.0.orig.tar.gz ad6a395572324288c993f35f6d3e08b3 8884 python-cobra_0.29.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmYt5LwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHjQhAAkbv+0Irxmq7mqQNwipVbt2vGdzljQW2O +XoS+My9ULJo4+ugozxo06kfYyBMEGpnKOyCsNOI6SG4yl6iEH3OYTAze64Tt9O8 zglOe2InBdUUAGAGWmN0PY53XKsA5UruqyLS6jtNhTTe3vw4mXKPbZsYZi8+kD6K OeGQxO0sFaexgGGU53IxVGUjXXdIoOxVPJ24zPsy2Rjvt+JhpAa2jiou9mS4PJdt rfrMrr71dzKsrqriSqUQe+trkgI6ARDk/gVOw3w6D4vhk5UuOg7stqpYM9x69ck6 quvZU6o2ppyUlUlVcTf6OnCoa4Vp4qMI/f8j6xnZ9S9CeYURrNw8hyRG+G3jgfC7 aswPn27NM79eHebRC5DD7/7BjAfW2ak8XdLiweOMMJPJm600voIZsnjWgCqggjkO 04z564XTHBbMzhUUcIdZDTrME90F7+haMJTbKKCJ9K0KbYSDOOIce5UNu27frdj5 lNBk0iRQWIg4zV4L16TDA3rYwLZMWG3K8hTjWagj7PwHPMulwEg9XUGUr5a0qlJ7 lLL9IUwf4+FjEBB9AccxxPGS99niUDZ93wyjH+uon4G+afGLqh91NA6hAa+bJZOA SXF2sVAfRszR0kAv7vLXk4vqmOlHV0+aT/N7DllV8jM4f+ERzQ9kL+KzPTEli15T JkhcCF0jWGo= =J9XS -----END PGP SIGNATURE----- Mon Apr 29 01:49:53 UTC 2024 I: Checking whether the package is not for us Mon Apr 29 01:49:53 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Mon Apr 29 01:49:53 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Mon Apr 29 01:58:20 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 28 13:50:00 -12 2024 I: pbuilder-time-stamp: 1714355400 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cobra_0.29.0-2.dsc] I: copying [./python-cobra_0.29.0.orig.tar.gz] I: copying [./python-cobra_0.29.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Apr 28 05:55:08 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cobra_0.29.0-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cobra in python-cobra-0.29.0 dpkg-source: info: unpacking python-cobra_0.29.0.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.29.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying xfail_test_show_versions.patch dpkg-source: info: applying ignore_tests.patch dpkg-source: info: applying do-not-seek-for-name.patch dpkg-source: info: applying 32-bit-test.patch dpkg-source: info: applying no_future_dependency.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30488/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='2e152f8ead3c41c1a520737bc5329101' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='30488' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/pbuilderrc_wz02 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/b1 --logfile b1/build.log python-cobra_0.29.0-2.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 28 07:44 /bin -> usr/bin I: user script /srv/workspace/pbuilder/30488/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5-dev, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19440 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-resources; however: Package python3-importlib-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang (>= 1.7.0-1~); however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 5.0.8-1~); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5-dev; however: Package libsbml5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-appdirs; however: Package python3-appdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd3{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbtf2{a} libcamd3{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcxsparse4{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libklu2{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldl3{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libparu0{a} libpipeline1{a} libpng16-16t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libqhull-r8.0{a} libraqm0{a} librbio4{a} libreadline8t64{a} libsbml5-dev{a} libsbml5t64{a} libsharpyuv0{a} libspex3{a} libspqr4{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libumfpack6{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-anyio{a} python3-appdirs{a} python3-attr{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-h11{a} python3-hatch-vcs{a} python3-hatchling{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-importlib-resources{a} python3-iniconfig{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pathspec{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-pluggy{a} python3-pydantic{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-benchmark{a} python3-pytest-mock{a} python3-referencing{a} python3-requests{a} python3-rich{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-simplejson{a} python3-six{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-trove-classifiers{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} swig{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgraphblas-dev libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-elasticsearch python3-freezegun python3-graphviz python3-html5lib python3-jinja2 python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygal python3-rfc3987 python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 214 newly installed, 0 to remove and 0 not upgraded. Need to get 136 MB of archives. After unpacking 571 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.11-minimal armhf 3.11.9-1 [805 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.11-minimal armhf 3.11.9-1 [1600 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libpython3.11-stdlib armhf 3.11.9-1 [1704 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf python3.11 armhf 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.2.1-3 [1326 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20240203 [158 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-3+b1 [1091 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [928 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.43-5 [262 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b4 [372 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-1 [140 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b1 [46.4 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23 [252 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b1 [16.4 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.14-1 [693 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7 [481 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf blt armhf 2.5.3+dfsg-7 [6024 B] Get: 53 http://deb.debian.org/debian unstable/main armhf cython3 armhf 3.0.10+dfsg-5 [3208 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 61 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.3 [901 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf python3-distutils all 3.12.3-1 [131 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 68.1.2-2 [468 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20240422 [107 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libsuitesparseconfig7 armhf 1:7.7.0+dfsg-2 [21.8 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libamd3 armhf 1:7.7.0+dfsg-2 [39.4 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libblas-dev armhf 3.12.0-3 [119 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf libbtf2 armhf 1:7.7.0+dfsg-2 [24.2 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libcamd3 armhf 1:7.7.0+dfsg-2 [37.6 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libccolamd3 armhf 1:7.7.0+dfsg-2 [39.6 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libcolamd3 armhf 1:7.7.0+dfsg-2 [32.1 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libcholmod5 armhf 1:7.7.0+dfsg-2 [606 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libcxsparse4 armhf 1:7.7.0+dfsg-2 [79.0 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.6.2-1 [140 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.78.4-7 [1285 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libltdl7 armhf 2.4.7-7+b1 [390 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libglpk40 armhf 5.0-1+b1 [330 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-2+b1 [328 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-2+b1 [591 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libklu2 armhf 1:7.7.0+dfsg-2 [82.0 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libldl3 armhf 1:7.7.0+dfsg-2 [22.8 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libsuitesparse-mongoose3 armhf 1:7.7.0+dfsg-2 [46.1 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libumfpack6 armhf 1:7.7.0+dfsg-2 [267 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf librbio4 armhf 1:7.7.0+dfsg-2 [39.2 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libspqr4 armhf 1:7.7.0+dfsg-2 [128 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libspex3 armhf 1:7.7.0+dfsg-2 [55.5 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libparu0 armhf 1:7.7.0+dfsg-2 [62.0 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf liblapack-dev armhf 3.12.0-3 [1903 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf libsuitesparse-dev armhf 1:7.7.0+dfsg-2 [1438 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libglpk-dev armhf 5.0-1+b1 [404 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 8.3.0-2+b1 [2156 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libimagequant0 armhf 2.18.0-1+b1 [30.7 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 111 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b1 [25.5 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.14-2+b1 [126 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf libopenjp2-7 armhf 2.5.0-2+b3 [170 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf libpython3.11t64 armhf 3.11.9-1 [1674 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf libpython3.11-dev armhf 3.11.9-1 [3108 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf libpython3-dev armhf 3.11.8-1 [9560 B] Get: 123 http://deb.debian.org/debian unstable/main armhf libqhull-r8.0 armhf 2020.2-6+b1 [219 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf libraqm0 armhf 0.10.1-1+b1 [11.8 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf libsbml5t64 armhf 5.20.2+dfsg-3 [1877 kB] Get: 126 http://deb.debian.org/debian unstable/main armhf libsbml5-dev armhf 5.20.2+dfsg-3 [3015 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.3.2-0.4+b1 [106 kB] Get: 128 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.3.2-0.4+b1 [262 kB] Get: 129 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-4 [301 kB] Get: 130 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.3.2-0.4+b1 [107 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.3.2-0.4+b1 [116 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf libxslt1.1 armhf 1.1.35-1+b1 [212 kB] Get: 133 http://deb.debian.org/debian unstable/main armhf python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf python3-idna all 3.6-2 [37.0 kB] Get: 135 http://deb.debian.org/debian unstable/main armhf python3-sniffio all 1.3.0-2 [7076 B] Get: 136 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.10.0-1 [66.2 kB] Get: 137 http://deb.debian.org/debian unstable/main armhf python3-anyio all 4.3.0-1 [56.5 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf python3-appdirs all 1.4.4-4 [12.5 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf python3-attr all 23.2.0-2 [65.5 kB] Get: 140 http://deb.debian.org/debian unstable/main armhf python3-brotli armhf 1.1.0-2+b3 [304 kB] Get: 141 http://deb.debian.org/debian unstable/main armhf python3-certifi all 2023.11.17-1 [155 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 143 http://deb.debian.org/debian unstable/main armhf python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 144 http://deb.debian.org/debian unstable/main armhf python3-colorama all 0.4.6-4 [36.2 kB] Get: 145 http://deb.debian.org/debian unstable/main armhf python3-click all 8.1.7-1 [94.0 kB] Get: 146 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:1.26.4+ds-8 [4132 kB] Get: 147 http://deb.debian.org/debian unstable/main armhf python3-contourpy armhf 1.0.7-3 [231 kB] Get: 148 http://deb.debian.org/debian unstable/main armhf python3-cpuinfo all 9.0.0+git20221119-1 [23.2 kB] Get: 149 http://deb.debian.org/debian unstable/main armhf python3-cycler all 0.12.1-1 [9496 B] Get: 150 http://deb.debian.org/debian unstable/main armhf python3-six all 1.16.0-6 [16.3 kB] Get: 151 http://deb.debian.org/debian unstable/main armhf python3-dateutil all 2.9.0-2 [79.4 kB] Get: 152 http://deb.debian.org/debian unstable/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 153 http://deb.debian.org/debian unstable/main armhf python3-depinfo armhf 2.2.0-2 [11.5 kB] Get: 154 http://deb.debian.org/debian unstable/main armhf python3.11-dev armhf 3.11.9-1 [501 kB] Get: 155 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.11.8-1 [26.1 kB] Get: 156 http://deb.debian.org/debian unstable/main armhf python3-diskcache all 5.6.3-1 [34.4 kB] Get: 157 http://deb.debian.org/debian unstable/main armhf python3-scipy armhf 1.11.4-6 [16.9 MB] Get: 158 http://deb.debian.org/debian unstable/main armhf python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 159 http://deb.debian.org/debian unstable/main armhf python3-mpmath all 1.3.0-1 [419 kB] Get: 160 http://deb.debian.org/debian unstable/main armhf python3-sympy all 1.12-7 [3869 kB] Get: 161 http://deb.debian.org/debian unstable/main armhf python3-tz all 2024.1-2 [30.9 kB] Get: 162 http://deb.debian.org/debian unstable/main armhf python3-fs all 2.4.16-4 [95.4 kB] Get: 163 http://deb.debian.org/debian unstable/main armhf python3-lxml armhf 5.2.1-1 [1788 kB] Get: 164 http://deb.debian.org/debian unstable/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b3 [24.4 kB] Get: 165 http://deb.debian.org/debian unstable/main armhf python3-unicodedata2 armhf 15.1.0+ds-1+b1 [297 kB] Get: 166 http://deb.debian.org/debian unstable/main armhf unicode-data all 15.1.0-1 [8547 kB] Get: 167 http://deb.debian.org/debian unstable/main armhf python3-fonttools armhf 4.46.0-1 [1536 kB] Get: 168 http://deb.debian.org/debian unstable/main armhf python3-h11 all 0.14.0-1 [50.1 kB] Get: 169 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.0-1 [45.5 kB] Get: 170 http://deb.debian.org/debian unstable/main armhf python3-pathspec all 0.12.1-1 [28.1 kB] Get: 171 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 172 http://deb.debian.org/debian unstable/main armhf python3-trove-classifiers all 2024.1.31-1 [9968 B] Get: 173 http://deb.debian.org/debian unstable/main armhf python3-hatchling all 1.24.2-1 [53.2 kB] Get: 174 http://deb.debian.org/debian unstable/main armhf python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get: 175 http://deb.debian.org/debian unstable/main armhf python3-hatch-vcs all 0.4.0-1 [8336 B] Get: 176 http://deb.debian.org/debian unstable/main armhf python3-httpcore all 1.0.4-1 [44.5 kB] Get: 177 http://deb.debian.org/debian unstable/main armhf python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 178 http://deb.debian.org/debian unstable/main armhf python3-mdurl all 0.1.2-1 [9444 B] Get: 179 http://deb.debian.org/debian unstable/main armhf python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 180 http://deb.debian.org/debian unstable/main armhf python3-rich all 13.7.1-1 [201 kB] Get: 181 http://deb.debian.org/debian unstable/main armhf python3-httpx all 0.27.0-1 [76.8 kB] Get: 182 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.2.0-1 [59.9 kB] Get: 183 http://deb.debian.org/debian unstable/main armhf python3-zipp all 1.0.0-6 [6696 B] Get: 184 http://deb.debian.org/debian unstable/main armhf python3-importlib-resources all 6.0.1-1 [21.7 kB] Get: 185 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 186 http://deb.debian.org/debian unstable/main armhf python3-rpds-py armhf 0.12.0-3 [224 kB] Get: 187 http://deb.debian.org/debian unstable/main armhf python3-referencing all 0.31.0-1 [22.2 kB] Get: 188 http://deb.debian.org/debian unstable/main armhf python3-jsonschema-specifications all 2023.12.1-1 [8976 B] Get: 189 http://deb.debian.org/debian unstable/main armhf python3-jsonschema all 4.19.2-2 [71.2 kB] Get: 190 http://deb.debian.org/debian unstable/main armhf python3-kiwisolver armhf 1.4.5-1 [69.0 kB] Get: 191 http://deb.debian.org/debian unstable/main armhf python3-pil armhf 10.3.0-2 [521 kB] Get: 192 http://deb.debian.org/debian unstable/main armhf python3-tk armhf 3.12.3-1 [105 kB] Get: 193 http://deb.debian.org/debian unstable/main armhf python3-pil.imagetk armhf 10.3.0-2 [79.1 kB] Get: 194 http://deb.debian.org/debian unstable/main armhf python3-pyparsing all 3.1.2-1 [146 kB] Get: 195 http://deb.debian.org/debian unstable/main armhf python3-matplotlib armhf 3.6.3-2 [7907 kB] Get: 196 http://deb.debian.org/debian unstable/main armhf python3-swiglpk armhf 5.0.10-1 [87.8 kB] Get: 197 http://deb.debian.org/debian unstable/main armhf python3-optlang all 1.8.1-1 [82.4 kB] Get: 198 http://deb.debian.org/debian unstable/main armhf python3-pandas-lib armhf 2.1.4+dfsg-7 [7005 kB] Get: 199 http://deb.debian.org/debian unstable/main armhf python3-pandas all 2.1.4+dfsg-7 [3015 kB] Get: 200 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.43.0-1 [52.5 kB] Get: 201 http://deb.debian.org/debian unstable/main armhf python3-pip all 24.0+dfsg-2 [1517 kB] Get: 202 http://deb.debian.org/debian unstable/main armhf python3-pipdeptree armhf 2.2.0-3 [20.6 kB] Get: 203 http://deb.debian.org/debian unstable/main armhf python3-pydantic armhf 1.10.14-1 [2853 kB] Get: 204 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.1.1-2 [245 kB] Get: 205 http://deb.debian.org/debian unstable/main armhf python3-pytest-benchmark all 4.0.0-3 [43.4 kB] Get: 206 http://deb.debian.org/debian unstable/main armhf python3-pytest-mock all 3.12.0-1.1 [17.6 kB] Get: 207 http://deb.debian.org/debian unstable/main armhf python3-urllib3 all 1.26.18-2 [116 kB] Get: 208 http://deb.debian.org/debian unstable/main armhf python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 209 http://deb.debian.org/debian unstable/main armhf python3-ruamel.yaml.clib armhf 0.2.8+ds-1 [160 kB] Get: 210 http://deb.debian.org/debian unstable/main armhf python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 211 http://deb.debian.org/debian unstable/main armhf swig armhf 4.2.1-1 [1375 kB] Get: 212 http://deb.debian.org/debian unstable/main armhf python3-sbml5 armhf 5.20.2+dfsg-3 [3121 kB] Get: 213 http://deb.debian.org/debian unstable/main armhf python3-simplejson armhf 3.19.2-1+b1 [65.5 kB] Get: 214 http://deb.debian.org/debian unstable/main armhf python3-tabulate all 0.8.10-1 [38.8 kB] Fetched 136 MB in 5s (25.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19440 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.9-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_armhf.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:armhf (3.11.9-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19756 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_armhf.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../5-libreadline8t64_8.2-4_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_armhf.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20748 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_armhf.deb ... Unpacking python3 (3.11.8-1) ... 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Setting up libicu72:armhf (72.1-4+b1) ... Setting up liblerc4:armhf (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:armhf (1.1.0-2+b3) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:armhf (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:armhf (2020.2-6+b1) ... Setting up libldl3:armhf (1:7.7.0+dfsg-2) ... Setting up file (1:5.45-3) ... Setting up libjbig0:armhf (2.1-6.1+b1) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Apr 29 01:51:15 UTC 2024. Universal Time is now: Mon Apr 29 01:51:15 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libbtf2:armhf (1:7.7.0+dfsg-2) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:armhf (2.78.4-7) ... No schema files found: doing nothing. Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-2+b1) ... Setting up libexpat1-dev:armhf (2.6.2-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:armhf (1.0.13-3+b1) ... Setting up libimagequant0:armhf (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.43-5) ... Setting up libtcl8.6:armhf (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libltdl7:armhf (2.4.7-7+b1) ... Setting up libgfortran5:armhf (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.3.2-0.4+b1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:armhf (4.5.1+git230720-4) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsuitesparseconfig7:armhf (1:7.7.0+dfsg-2) ... Setting up libopenjp2-7:armhf (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:armhf (1.3.2-0.4+b1) ... Setting up libbsd0:armhf (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up libblas-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3+b1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.17.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libgmp-dev:armhf (2:6.3.0+dfsg-2+b1) ... Setting up libamd3:armhf (1:7.7.0+dfsg-2) ... Setting up libtool (2.4.7-7) ... Setting up libcolamd3:armhf (1:7.7.0+dfsg-2) ... Setting up libsbml5t64:armhf (5.20.2+dfsg-3) ... Setting up libspex3:armhf (1:7.7.0+dfsg-2) ... Setting up libsuitesparse-mongoose3:armhf (1:7.7.0+dfsg-2) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:armhf (1.3.2-0.4+b1) ... Setting up libcxsparse4:armhf (1:7.7.0+dfsg-2) ... Setting up libcamd3:armhf (1:7.7.0+dfsg-2) ... Setting up libsbml5-dev (5.20.2+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b4) ... Setting up libglpk40:armhf (5.0-1+b1) ... Setting up librbio4:armhf (1:7.7.0+dfsg-2) ... Setting up liblapack-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libccolamd3:armhf (1:7.7.0+dfsg-2) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libxslt1.1:armhf (1.1.35-1+b1) ... Setting up libx11-6:armhf (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:armhf (8.3.0-2+b1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1+b1) ... Setting up libcholmod5:armhf (1:7.7.0+dfsg-2) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b1) ... Setting up libspqr4:armhf (1:7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.9-1) ... Setting up libpython3.11t64:armhf (3.11.9-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libklu2:armhf (1:7.7.0+dfsg-2) ... Setting up libpython3.11-dev:armhf (3.11.9-1) ... Setting up libraqm0:armhf (0.10.1-1+b1) ... Setting up libumfpack6:armhf (1:7.7.0+dfsg-2) ... Setting up libxss1:armhf (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:armhf (2.3.6-1+b1) ... Setting up libpython3-dev:armhf (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libtk8.6:armhf (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up libparu0:armhf (1:7.7.0+dfsg-2) ... Setting up python3 (3.11.8-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-sbml5 (5.20.2+dfsg-3) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-pil:armhf (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-idna (3.6-2) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-h11 (0.14.0-1) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-pip (24.0+dfsg-2) ... Setting up python3-cpuinfo (9.0.0+git20221119-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-rpds-py (0.12.0-3) ... Setting up python3-trove-classifiers (2024.1.31-1) ... Setting up python3-lxml:armhf (5.2.1-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-diskcache (5.6.3-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pipdeptree (2.2.0-3) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-swiglpk (5.0.10-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... Setting up python3-more-itertools (10.2.0-1) ... Setting up python3-httpcore (1.0.4-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sniffio (1.3.0-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libsuitesparse-dev:armhf (1:7.7.0+dfsg-2) ... Setting up python3-anyio (4.3.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (8.1.1-2) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-ruamel.yaml.clib:armhf (0.2.8+ds-1) ... Setting up python3-tabulate (0.8.10-1) ... Setting up python3-tk:armhf (3.12.3-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-click (8.1.7-1) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:armhf (10.3.0-2) ... Setting up libglpk-dev:armhf (5.0-1+b1) ... Setting up python3-pydantic (1.10.14-1) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-depinfo (2.2.0-2) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-pytest-mock (3.12.0-1.1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-hatchling (1.24.2-1) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up python3-optlang (1.8.1-1) ... Setting up python3-pytest-benchmark (4.0.0-3) ... Setting up dh-python (6.20240422) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-importlib-resources (6.0.1-1) ... Setting up python3-rich (13.7.1-1) ... Setting up python3-pandas-lib:armhf (2.1.4+dfsg-7) ... Setting up python3-pandas (2.1.4+dfsg-7) ... Setting up python3-httpx (0.27.0-1) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up python3-jsonschema (4.19.2-2) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Processing triggers for libc-bin (2.37-19) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cobra-0.29.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.0-2_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.0' dh_auto_clean I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.1, pluggy-1.5.0 benchmark: 4.0.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.0 configfile: tox.ini plugins: anyio-4.3.0, mock-3.12.0, benchmark-4.0.0 collected 551 items tests/test_core/test_configuration.py ...... [ 1%] tests/test_core/test_core_reaction.py ..........ss...................... [ 7%] ...................x....... [ 12%] tests/test_core/test_dictlist.py ...................... [ 16%] tests/test_core/test_formula.py ..... [ 17%] tests/test_core/test_gene.py . [ 17%] tests/test_core/test_gpr.py .....................x..x................... [ 25%] .......................... [ 29%] tests/test_core/test_group.py .. [ 30%] tests/test_core/test_metabolite.py ...ss.ss. [ 31%] tests/test_core/test_model.py .......................................... [ 39%] ...........s..s.ss. [ 43%] tests/test_core/test_solution.py .ss [ 43%] tests/test_flux_analysis/test_deletion.py ....s..... [ 45%] tests/test_flux_analysis/test_fastcc.py .... [ 46%] tests/test_flux_analysis/test_geometric.py .. [ 46%] tests/test_flux_analysis/test_moma.py . [ 46%] tests/test_flux_analysis/test_parsimonious.py .. [ 47%] tests/test_flux_analysis/test_reaction.py . [ 47%] tests/test_flux_analysis/test_room.py .... [ 47%] tests/test_flux_analysis/test_variability.py ....... [ 49%] tests/test_flux_analysis/test_deletion.py sss [ 49%] tests/test_flux_analysis/test_moma.py s [ 49%] tests/test_flux_analysis/test_deletion.py ...... [ 50%] tests/test_flux_analysis/test_gapfilling.py . [ 51%] tests/test_flux_analysis/test_helpers.py ... [ 51%] tests/test_flux_analysis/test_loopless.py ..... [ 52%] tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%] tests/test_flux_analysis/test_variability.py ....... [ 54%] tests/test_io/test_annotation.py .. [ 55%] tests/test_io/test_annotation_format.py .. [ 55%] tests/test_io/test_io_order.py ........................... [ 60%] tests/test_io/test_json.py .... [ 61%] tests/test_io/test_mat.py .......ssss.... [ 64%] tests/test_io/test_notes.py . [ 64%] tests/test_io/test_pickle.py .. [ 64%] tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............. [ 72%] tests/test_io/test_web/test_load.py ..ssss. [ 73%] tests/test_io/test_yaml.py .x [ 73%] tests/test_manipulation/test_annotate.py . [ 73%] tests/test_manipulation/test_delete.py ....... [ 75%] tests/test_manipulation/test_modify.py ... [ 75%] tests/test_manipulation/test_validate.py .. [ 76%] tests/test_medium/test_boundary_types.py ......... [ 77%] tests/test_medium/test_minimal_medium.py .......... [ 79%] tests/test_sampling/test_achr.py ...... [ 80%] tests/test_sampling/test_optgp.py ...... [ 81%] tests/test_sampling/test_sampling.py .......... [ 83%] tests/test_summary/test_metabolite_summary.py ................. [ 86%] tests/test_summary/test_model_summary.py ............... [ 89%] tests/test_summary/test_reaction_summary.py .................... [ 92%] tests/test_util/test_array.py .. [ 93%] tests/test_util/test_context.py ... [ 93%] tests/test_util/test_process_pool.py ............... [ 96%] tests/test_util/test_solver.py ..............s [ 99%] tests/test_util/test_util.py ...x [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list warn("need to pass in a list") .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead. warn("Please use reaction.flux instead.", DeprecationWarning) .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py:438: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol.growth) .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py:439: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol_one.growth) .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_json.py: 1 warning .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_mat.py: 3 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_pickle.py: 1 warning .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_sbml.py: 9 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py: 1 warning /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py::test_save_yaml_model /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py:29: PendingDeprecationWarning: you should no longer specify 'unsafe'. For **dumping only** use yaml=YAML(typ='full') yaml = YAML(typ="unsafe") .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py: 96 warnings /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py:97: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` return most[0] .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py:74: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` compartment = most[matches[most]][0] .pybuild/cpython3_3.11_cobra/build/tests/test_util/test_process_pool.py::test_with_context /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py:72: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://pytest-mock.readthedocs.io/en/latest/remarks.html#usage-as-context-manager self._pool.__enter__() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ------------------------------------------------------------------------------------------------------------------------ benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------ Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_subtract_metabolite_benchmark[cplex] 17.2390 (1.0) 52.1580 (1.0) 18.2453 (1.0) 2.2340 (1.0) 17.9600 (1.0) 0.3190 (1.14) 35;91 54,808.6960 (1.0) 1870 1 test_subtract_metabolite_benchmark[gurobi] 17.2800 (1.00) 64.3170 (1.23) 18.4417 (1.01) 2.6459 (1.18) 18.0791 (1.01) 0.3210 (1.14) 38;83 54,224.9516 (0.99) 1603 1 test_subtract_metabolite_benchmark[glpk] 17.3590 (1.01) 52.6380 (1.01) 18.3193 (1.00) 2.2380 (1.00) 18.0000 (1.00) 0.2810 (1.0) 40;122 54,587.2597 (1.00) 1858 1 test_achr_sample_benchmark 682.8951 (39.61) 1,102.4399 (21.14) 810.9441 (44.45) 71.8623 (32.17) 801.8110 (44.64) 101.6360 (361.66) 114;9 1,233.1306 (0.02) 429 1 test_change_objective_benchmark[optlang-glpk] 782.6521 (45.40) 2,424.4710 (46.48) 816.4615 (44.75) 46.4639 (20.80) 806.1701 (44.89) 47.8282 (170.19) 38;2 1,224.7974 (0.02) 1715 1 test_optgp_sample_benchmark 969.0051 (56.21) 1,594.6230 (30.57) 1,211.8989 (66.42) 127.0737 (56.88) 1,196.9970 (66.65) 192.9822 (686.70) 247;1 825.1513 (0.02) 671 1 test_loopless_benchmark_after 3,506.2729 (203.39) 3,989.9350 (76.50) 3,637.9397 (199.39) 86.6444 (38.78) 3,613.3290 (201.19) 72.9380 (259.54) 29;9 274.8809 (0.01) 104 1 test_loopless_benchmark_before 19,835.2811 (>1000.0) 22,979.6870 (440.58) 20,782.9976 (>1000.0) 958.1916 (428.90) 20,482.6970 (>1000.0) 1,179.6971 (>1000.0) 7;1 48.1163 (0.00) 32 1 test_minimal_medium_mip_benchmark 22,120.4770 (>1000.0) 23,882.4140 (457.89) 23,154.7509 (>1000.0) 501.5072 (224.48) 23,234.2175 (>1000.0) 816.9709 (>1000.0) 9;0 43.1877 (0.00) 26 1 test_minimal_medium_linear_benchmark 22,483.0640 (>1000.0) 26,902.4239 (515.79) 23,668.4048 (>1000.0) 1,066.9795 (477.60) 23,346.8330 (>1000.0) 738.9130 (>1000.0) 3;2 42.2504 (0.00) 24 1 test_copy_benchmark[optlang-glpk] 57,258.0950 (>1000.0) 168,008.5040 (>1000.0) 74,325.2540 (>1000.0) 30,548.3850 (>1000.0) 62,949.8455 (>1000.0) 14,863.7340 (>1000.0) 1;1 13.4544 (0.00) 12 1 test_single_reaction_deletion_benchmark[glpk] 66,778.9039 (>1000.0) 67,508.8380 (>1000.0) 67,148.8189 (>1000.0) 214.3872 (95.96) 67,159.4910 (>1000.0) 300.4289 (>1000.0) 6;0 14.8923 (0.00) 15 1 test_deepcopy_benchmark 88,586.6239 (>1000.0) 93,173.5351 (>1000.0) 91,018.5157 (>1000.0) 1,816.7869 (813.23) 91,861.2230 (>1000.0) 3,482.7511 (>1000.0) 6;0 10.9868 (0.00) 11 1 test_gpr_equality_benchmark 106,725.5561 (>1000.0) 107,652.8820 (>1000.0) 107,091.2982 (>1000.0) 280.1305 (125.39) 107,048.2240 (>1000.0) 262.3298 (933.47) 3;1 9.3378 (0.00) 9 1 test_single_gene_deletion_fba_benchmark[glpk] 139,836.6591 (>1000.0) 159,885.7220 (>1000.0) 147,071.5300 (>1000.0) 7,925.0571 (>1000.0) 142,169.2930 (>1000.0) 12,643.8755 (>1000.0) 2;0 6.7994 (0.00) 7 1 test_fastcc_benchmark[glpk] 214,957.5370 (>1000.0) 221,868.2830 (>1000.0) 217,867.8058 (>1000.0) 3,545.4990 (>1000.0) 215,524.7959 (>1000.0) 6,415.5547 (>1000.0) 2;0 4.5899 (0.00) 5 1 test_add_metabolite_benchmark[gurobi] 284,009.4391 (>1000.0) 289,214.4080 (>1000.0) 285,675.6978 (>1000.0) 2,230.9790 (998.63) 284,301.8280 (>1000.0) 3,010.9692 (>1000.0) 1;0 3.5005 (0.00) 5 1 test_add_metabolite_benchmark[glpk] 284,770.3311 (>1000.0) 296,747.0509 (>1000.0) 289,104.9638 (>1000.0) 4,860.7309 (>1000.0) 286,578.7850 (>1000.0) 6,452.2425 (>1000.0) 1;0 3.4590 (0.00) 5 1 test_add_metabolite_benchmark[cplex] 293,155.7820 (>1000.0) 297,966.6049 (>1000.0) 294,843.7522 (>1000.0) 2,052.8664 (918.90) 294,046.9100 (>1000.0) 3,163.3737 (>1000.0) 1;0 3.3916 (0.00) 5 1 test_optgp_init_benchmark 298,183.3441 (>1000.0) 312,271.8331 (>1000.0) 306,640.7174 (>1000.0) 5,711.8060 (>1000.0) 307,028.0640 (>1000.0) 8,733.2032 (>1000.0) 1;0 3.2611 (0.00) 5 1 test_achr_init_benchmark 302,382.1920 (>1000.0) 311,350.1860 (>1000.0) 307,484.7988 (>1000.0) 4,442.6584 (>1000.0) 310,131.2710 (>1000.0) 8,048.9777 (>1000.0) 2;0 3.2522 (0.00) 5 1 test_flux_variability_loopless_benchmark[glpk] 469,346.9841 (>1000.0) 512,493.1160 (>1000.0) 493,229.9066 (>1000.0) 18,948.1522 (>1000.0) 493,526.7350 (>1000.0) 34,150.7579 (>1000.0) 2;0 2.0275 (0.00) 5 1 test_double_gene_deletion_benchmark 588,164.9940 (>1000.0) 624,185.1280 (>1000.0) 610,346.7096 (>1000.0) 15,595.1486 (>1000.0) 618,696.2470 (>1000.0) 24,722.4827 (>1000.0) 1;0 1.6384 (0.00) 5 1 test_single_gene_deletion_linear_moma_benchmark[glpk] 676,461.4901 (>1000.0) 1,768,240.1501 (>1000.0) 897,476.3722 (>1000.0) 486,776.8697 (>1000.0) 680,403.4651 (>1000.0) 275,279.5695 (>1000.0) 1;1 1.1142 (0.00) 5 1 test_double_reaction_deletion_benchmark 800,330.6601 (>1000.0) 832,404.0170 (>1000.0) 817,478.1100 (>1000.0) 13,289.1476 (>1000.0) 812,796.4870 (>1000.0) 20,739.3472 (>1000.0) 2;0 1.2233 (0.00) 5 1 test_gpr_symbolism_benchmark 808,700.8690 (>1000.0) 1,129,018.8930 (>1000.0) 874,538.0166 (>1000.0) 142,271.5256 (>1000.0) 812,138.9430 (>1000.0) 82,925.6810 (>1000.0) 1;1 1.1435 (0.00) 5 1 test_pfba_benchmark[glpk] 871,496.3971 (>1000.0) 881,370.6749 (>1000.0) 877,397.2126 (>1000.0) 3,771.0454 (>1000.0) 878,652.0950 (>1000.0) 4,712.1270 (>1000.0) 2;0 1.1397 (0.00) 5 1 test_single_gene_deletion_linear_room_benchmark[glpk] 1,005,844.3000 (>1000.0) 1,015,324.7509 (>1000.0) 1,010,045.4974 (>1000.0) 4,307.9805 (>1000.0) 1,007,751.7100 (>1000.0) 7,425.1067 (>1000.0) 1;0 0.9901 (0.00) 5 1 test_flux_variability_benchmark[glpk] 1,020,413.7220 (>1000.0) 1,031,537.6730 (>1000.0) 1,025,128.7326 (>1000.0) 4,148.1635 (>1000.0) 1,024,903.9171 (>1000.0) 5,004.2060 (>1000.0) 2;0 0.9755 (0.00) 5 1 test_copy_benchmark_large_model[optlang-glpk] 1,190,898.7369 (>1000.0) 1,695,389.3891 (>1000.0) 1,385,364.0192 (>1000.0) 264,158.2542 (>1000.0) 1,196,090.9860 (>1000.0) 472,497.2780 (>1000.0) 2;0 0.7218 (0.00) 5 1 test_geometric_fba_benchmark[glpk] 1,375,815.9770 (>1000.0) 1,392,207.0140 (>1000.0) 1,384,914.8822 (>1000.0) 7,313.0206 (>1000.0) 1,387,078.8420 (>1000.0) 13,173.0263 (>1000.0) 1;0 0.7221 (0.00) 5 1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ==== 509 passed, 31 skipped, 11 xfailed, 170 warnings in 282.22s (0:04:42) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11 creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/metabolite.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/formula.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/reaction.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/model.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/species.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/annotations.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/load.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/yaml.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/mat.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/json.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/delete.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/validate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/optgp.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/sampling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/core.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/exceptions.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/object.py to object.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/configuration.py to configuration.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/model.py to model.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/solution.py to solution.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/metabolite.py to metabolite.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/gene.py to gene.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/group.py to group.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/species.py to species.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/formula.py to formula.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/dictlist.py to dictlist.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/load.py to load.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/yaml.py to yaml.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/dict.py to dict.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/process_pool.py to process_pool.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/solver.py to solver.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/core.py to core.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra-0.29.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.0' dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.0-2_armhf.deb'. dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.29.0-2_armhf.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.29.0-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30488 and its subdirectories I: Current time: Sun Apr 28 13:58:12 -12 2024 I: pbuilder-time-stamp: 1714355892 Mon Apr 29 01:58:23 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64a-armhf-rb.debian.net. Mon Apr 29 01:58:23 UTC 2024 I: Preparing to do remote build '2' on virt64a-armhf-rb.debian.net. Mon Apr 29 02:19:47 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. Mon Apr 29 02:19:50 UTC 2024 I: python-cobra_0.29.0-2_armhf.changes: Format: 1.8 Date: Sun, 28 Apr 2024 07:31:52 +0200 Source: python-cobra Binary: python-cobra-data python3-cobra Architecture: all armhf Version: 0.29.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks with Python 3 Closes: 1069985 Changes: python-cobra (0.29.0-2) unstable; urgency=medium . * Team upload. * Build-Depends: s/libsbml5/libsbml5-dev/ Closes: #1069985 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 2fbff3a4054ebdfbe5a2e74c8c0923042a9963c0 1437816 python-cobra-data_0.29.0-2_all.deb 2381da120e4195541d6249f8723fed84231d8425 10859 python-cobra_0.29.0-2_armhf.buildinfo 0839d404b24fed97c3f001d2ea9a5b7304416c99 1118912 python3-cobra_0.29.0-2_armhf.deb Checksums-Sha256: 66c38a7cd227fbf6901221760fe4dd73a9db2712dc31bf58facb3e1f31f53a58 1437816 python-cobra-data_0.29.0-2_all.deb bd334f36a02105ab54ce5d4af8dd1825b5f6e97b9617d11129ff3ba9ef130b10 10859 python-cobra_0.29.0-2_armhf.buildinfo e759e83acd20a87dd358c8ef3dbcf1f6adea43e7a5410221bf40a845e32a8704 1118912 python3-cobra_0.29.0-2_armhf.deb Files: 390170dd5d73e229e6cd7e883b104efa 1437816 python optional python-cobra-data_0.29.0-2_all.deb 6715e63dafdb671efcd220da8c5c0479 10859 python optional python-cobra_0.29.0-2_armhf.buildinfo 703874116405111ed2f3ec3aca7ca214 1118912 python optional python3-cobra_0.29.0-2_armhf.deb Mon Apr 29 02:19:51 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_34-5545.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/python-cobra_0.29.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/python-cobra_0.29.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/python-cobra_0.29.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/b1/python-cobra_0.29.0-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/b2/python-cobra_0.29.0-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.386s) 0.386s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.042s) 0.042s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 718ms CPU time consumed: 719ms Mon Apr 29 02:19:52 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 29 02:19:52 UTC 2024 I: python-cobra from unstable built successfully and reproducibly on armhf. Mon Apr 29 02:19:54 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Apr 29 02:19:54 UTC 2024 I: Submitting 12K b1/python-cobra_0.29.0-2_armhf.buildinfo.asc Mon Apr 29 02:19:55 UTC 2024 I: Submitting 12K b2/python-cobra_0.29.0-2_armhf.buildinfo.asc Mon Apr 29 02:19:57 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 29 02:19:57 UTC 2024 I: Done submitting .buildinfo files. Mon Apr 29 02:19:57 UTC 2024 I: Removing signed python-cobra_0.29.0-2_armhf.buildinfo.asc files: removed './b1/python-cobra_0.29.0-2_armhf.buildinfo.asc' removed './b2/python-cobra_0.29.0-2_armhf.buildinfo.asc'