Offset 1, 3 lines modified | Offset 1, 3 lines modified | ||
1 | ·b | 1 | ·bb86e98fcd1925ed39f4fe2360f7eb44·1043536·doc·optional·libhtsjdk-java-doc_4.1.0+dfsg-1_all.deb |
2 | ·e2a525d9d62d110f9137837762113747·1832576·java·optional·libhtsjdk-java_4.1.0+dfsg-1_all.deb | 2 | ·e2a525d9d62d110f9137837762113747·1832576·java·optional·libhtsjdk-java_4.1.0+dfsg-1_all.deb |
Offset 1, 3 lines modified | Offset 1, 3 lines modified | ||
1 | -rw-r--r--···0········0········0········4·2024-02-11·21:41:39.000000·debian-binary | 1 | -rw-r--r--···0········0········0········4·2024-02-11·21:41:39.000000·debian-binary |
2 | -rw-r--r--···0········0········0····26368·2024-02-11·21:41:39.000000·control.tar.xz | 2 | -rw-r--r--···0········0········0····26368·2024-02-11·21:41:39.000000·control.tar.xz |
3 | -rw-r--r--···0········0········0··10169 | 3 | -rw-r--r--···0········0········0··1016976·2024-02-11·21:41:39.000000·data.tar.xz |
Offset 1, 13 lines modified | Offset 1, 13 lines modified | ||
1 | Package:·libhtsjdk-java-doc | 1 | Package:·libhtsjdk-java-doc |
2 | Source:·htsjdk | 2 | Source:·htsjdk |
3 | Version:·4.1.0+dfsg-1 | 3 | Version:·4.1.0+dfsg-1 |
4 | Architecture:·all | 4 | Architecture:·all |
5 | Maintainer:·Debian·Med·Packaging·Team·<debian-med-packaging@lists.alioth.debian.org> | 5 | Maintainer:·Debian·Med·Packaging·Team·<debian-med-packaging@lists.alioth.debian.org> |
6 | Installed-Size:·2514 | 6 | Installed-Size:·25147 |
7 | Section:·doc | 7 | Section:·doc |
8 | Priority:·optional | 8 | Priority:·optional |
9 | Multi-Arch:·foreign | 9 | Multi-Arch:·foreign |
10 | Homepage:·https://samtools.github.io/htsjdk/ | 10 | Homepage:·https://samtools.github.io/htsjdk/ |
11 | Description:·Documentation·for·the·java·HTSJDK·library | 11 | Description:·Documentation·for·the·java·HTSJDK·library |
12 | ·HTSJDK·is·an·implementation·of·a·unified·Java·library·for·accessing·common | 12 | ·HTSJDK·is·an·implementation·of·a·unified·Java·library·for·accessing·common |
13 | ·file·formats,·such·as·SAM·(Sequence·Alignment/Map)·and·VCF,·used·for | 13 | ·file·formats,·such·as·SAM·(Sequence·Alignment/Map)·and·VCF,·used·for |
Offset 1080, 22 lines modified | Offset 1080, 22 lines modified | ||
1080 | -rw-r--r--···0·root·········(0)·root·········(0)····10867·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFSampleHeaderLine.html | 1080 | -rw-r--r--···0·root·········(0)·root·········(0)····10867·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFSampleHeaderLine.html |
1081 | -rw-r--r--···0·root·········(0)·root·········(0)····32388·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFSimpleHeaderLine.html | 1081 | -rw-r--r--···0·root·········(0)·root·········(0)····32388·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFSimpleHeaderLine.html |
1082 | -rw-r--r--···0·root·········(0)·root·········(0)····29765·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFStandardHeaderLines.html | 1082 | -rw-r--r--···0·root·········(0)·root·········(0)····29765·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFStandardHeaderLines.html |
1083 | -rw-r--r--···0·root·········(0)·root·········(0)·····9958·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFTextTransformer.html | 1083 | -rw-r--r--···0·root·········(0)·root·········(0)·····9958·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFTextTransformer.html |
1084 | -rw-r--r--···0·root·········(0)·root·········(0)····28441·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFUtils.html | 1084 | -rw-r--r--···0·root·········(0)·root·········(0)····28441·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFUtils.html |
1085 | -rw-r--r--···0·root·········(0)·root·········(0)····14736·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/package-summary.html | 1085 | -rw-r--r--···0·root·········(0)·root·········(0)····14736·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/package-summary.html |
1086 | -rw-r--r--···0·root·········(0)·root·········(0)····13991·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/package-tree.html | 1086 | -rw-r--r--···0·root·········(0)·root·········(0)····13991·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/package-tree.html |
1087 | -rw-r--r--···0·root·········(0)·root·········(0)··3133 | 1087 | -rw-r--r--···0·root·········(0)·root·········(0)··3133863·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/index-all.html |
1088 | -rw-r--r--···0·root·········(0)·root·········(0)····25187·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/index.html | 1088 | -rw-r--r--···0·root·········(0)·root·········(0)····25187·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/index.html |
1089 | -rw-r--r--···0·root·········(0)·root·········(0)·····1498·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/jquery-ui.overrides.css | 1089 | -rw-r--r--···0·root·········(0)·root·········(0)·····1498·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/jquery-ui.overrides.css |
1090 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/legal/ | 1090 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/legal/ |
1091 | -rw-r--r--···0·root·········(0)·root·········(0)·····1522·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/legal/ASSEMBLY_EXCEPTION | 1091 | -rw-r--r--···0·root·········(0)·root·········(0)·····1522·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/legal/ASSEMBLY_EXCEPTION |
1092 | -rw-r--r--···0·root·········(0)·root·········(0)·····2936·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/legal/jquery.md | 1092 | -rw-r--r--···0·root·········(0)·root·········(0)·····2936·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/legal/jquery.md |
1093 | -rw-r--r--···0·root·········(0)·root·········(0)·····1870·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/legal/jqueryUI.md | 1093 | -rw-r--r--···0·root·········(0)·root·········(0)·····1870·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/legal/jqueryUI.md |
1094 | -rw-r--r--···0·root·········(0)·root·········(0)···804 | 1094 | -rw-r--r--···0·root·········(0)·root·········(0)···804270·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/member-search-index.js |
1095 | -rw-r--r--···0·root·········(0)·root·········(0)·······45·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/module-search-index.js | 1095 | -rw-r--r--···0·root·········(0)·root·········(0)·······45·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/module-search-index.js |
1096 | -rw-r--r--···0·root·········(0)·root·········(0)······826·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/overview-summary.html | 1096 | -rw-r--r--···0·root·········(0)·root·········(0)······826·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/overview-summary.html |
1097 | -rw-r--r--···0·root·········(0)·root·········(0)···237598·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/overview-tree.html | 1097 | -rw-r--r--···0·root·········(0)·root·········(0)···237598·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/overview-tree.html |
1098 | -rw-r--r--···0·root·········(0)·root·········(0)·····3152·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/package-search-index.js | 1098 | -rw-r--r--···0·root·········(0)·root·········(0)·····3152·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/package-search-index.js |
1099 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/resources/ | 1099 | drwxr-xr-x···0·root·········(0)·root·········(0)········0·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/resources/ |
1100 | -rw-r--r--···0·root·········(0)·root·········(0)······499·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/resources/glass.png | 1100 | -rw-r--r--···0·root·········(0)·root·········(0)······499·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/resources/glass.png |
1101 | -rw-r--r--···0·root·········(0)·root·········(0)······394·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/resources/x.png | 1101 | -rw-r--r--···0·root·········(0)·root·········(0)······394·2024-02-11·21:41:39.000000·./usr/share/doc/libhtsjdk-java/api/resources/x.png |
Offset 6667, 25 lines modified | Offset 6667, 25 lines modified | ||
6667 | <div·class="block">Scans·the·classpath·for·classes·within·the·specified·package·and·sub-packages·that | 6667 | <div·class="block">Scans·the·classpath·for·classes·within·the·specified·package·and·sub-packages·that |
6668 | ·extend·the·parentType.</div> | 6668 | ·extend·the·parentType.</div> |
6669 | </dd> | 6669 | </dd> |
6670 | <dt><a·href="htsjdk/samtools/cram/CRAIIndex.html#find(java.util.List,int,int,int)"·class="member-name-link">find(List<CRAIEntry>,·int,·int,·int)</a>·-·Static·method·in·class·htsjdk.samtools.cram.<a·href="htsjdk/samtools/cram/CRAIIndex.html"·title="class·in·htsjdk.samtools.cram">CRAIIndex</a></dt> | 6670 | <dt><a·href="htsjdk/samtools/cram/CRAIIndex.html#find(java.util.List,int,int,int)"·class="member-name-link">find(List<CRAIEntry>,·int,·int,·int)</a>·-·Static·method·in·class·htsjdk.samtools.cram.<a·href="htsjdk/samtools/cram/CRAIIndex.html"·title="class·in·htsjdk.samtools.cram">CRAIIndex</a></dt> |
6671 | <dd> | 6671 | <dd> |
6672 | <div·class="block">Currently·unused,·but·retained·for·the·native·rai·query·implementation</div> | 6672 | <div·class="block">Currently·unused,·but·retained·for·the·native·rai·query·implementation</div> |
6673 | </dd> | 6673 | </dd> |
6674 | <dt><a·href="htsjdk/samtools/reference/IndexedFastaSequenceFile.html#findAndLoadSequenceDictionary(java.nio.file.Path)"·class="member-name-link">findAndLoadSequenceDictionary(Path)</a>·-·Method·in·class·htsjdk.samtools.reference.<a·href="htsjdk/samtools/reference/ | 6674 | <dt><a·href="htsjdk/samtools/reference/BlockCompressedIndexedFastaSequenceFile.html#findAndLoadSequenceDictionary(java.nio.file.Path)"·class="member-name-link">findAndLoadSequenceDictionary(Path)</a>·-·Method·in·class·htsjdk.samtools.reference.<a·href="htsjdk/samtools/reference/BlockCompressedI[·...·truncated·by·diffoscope;·len:·88,·SHA:·44be62ca3aaa55627f4efebc6281393e1afa9131913e0e4e5a600ab2773a299c·...·]IndexedFastaSequenceFile</a></dt> |
6675 | <dd> | 6675 | <dd> |
6676 | <div·class="block">Attempts·to·find·and·load·the·sequence·dictionary·if·present.</div> | 6676 | <div·class="block">Attempts·to·find·and·load·the·sequence·dictionary·if·present.</div> |
6677 | </dd> | 6677 | </dd> |
6678 | <dt><a·href="htsjdk/samtools/util/IntervalTree.html#findByIndex(int)"·class="member-name-link">findByIndex(int)</a>·-·Method·in·class·htsjdk.samtools.util.<a·href="htsjdk/samtools/util/IntervalTree.html"·title="class·in·htsjdk.samtools.util">IntervalTree</a></dt> | 6678 | <dt><a·href="htsjdk/samtools/util/IntervalTree.html#findByIndex(int)"·class="member-name-link">findByIndex(int)</a>·-·Method·in·class·htsjdk.samtools.util.<a·href="htsjdk/samtools/util/IntervalTree.html"·title="class·in·htsjdk.samtools.util">IntervalTree</a></dt> |
6679 | <dd> | 6679 | <dd> |
6680 | <div·class="block">Find·the·nth·interval·in·the·tree.</div> | 6680 | <div·class="block">Find·the·nth·interval·in·the·tree.</div> |
6681 | </dd> | 6681 | </dd> |
6682 | <dt><a·href="htsjdk/samtools/SAMFlag.html#findByName(java.lang.String)"·class="member-name-link">findByName(String)</a>·-·Static·method·in·enum·class·htsjdk.samtools.<a·href="htsjdk/samtools/SAMFlag.html"·title="enum·class·in·htsjdk.samtools">SAMFlag</a></dt> | 6682 | <dt><a·href="htsjdk/samtools/SAMFlag.html#findByName(java.lang.String)"·class="member-name-link">findByName(String)</a>·-·Static·method·in·enum·class·htsjdk.samtools.<a·href="htsjdk/samtools/SAMFlag.html"·title="enum·class·in·htsjdk.samtools">SAMFlag</a></dt> |
6683 | <dd> </dd> | 6683 | <dd> </dd> |
6684 | <dt><a·href="htsjdk/samtools/reference/IndexedFastaSequenceFile.html#findFastaIndex(java.nio.file.Path)"·class="member-name-link">findFastaIndex(Path)</a>·-·Static·method·in·class·htsjdk.samtools.reference.<a·href="htsjdk/samtools/reference/IndexedFastaSequenceF | 6684 | <dt><a·href="htsjdk/samtools/reference/BlockCompressedIndexedFastaSequenceFile.html#findFastaIndex(java.nio.file.Path)"·class="member-name-link">findFastaIndex(Path)</a>·-·Static·method·in·class·htsjdk.samtools.reference.<a·href="htsjdk/samtools/reference/BlockCompressedIndexedFastaSequenceFile[·...·truncated·by·diffoscope;·len:·65,·SHA:·10808bda5d7d9467ebfa8ed6bd1c2ad6457b4e0ace51caac345459eda054e4a9·...·]IndexedFastaSequenceFile</a></dt> |
6685 | <dd> </dd> | 6685 | <dd> </dd> |
6686 | <dt><a·href="htsjdk/samtools/SamFiles.html#findIndex(java.io.File)"·class="member-name-link">findIndex(File)</a>·-·Static·method·in·class·htsjdk.samtools.<a·href="htsjdk/samtools/SamFiles.html"·title="class·in·htsjdk.samtools">SamFiles</a></dt> | 6686 | <dt><a·href="htsjdk/samtools/SamFiles.html#findIndex(java.io.File)"·class="member-name-link">findIndex(File)</a>·-·Static·method·in·class·htsjdk.samtools.<a·href="htsjdk/samtools/SamFiles.html"·title="class·in·htsjdk.samtools">SamFiles</a></dt> |
6687 | <dd> | 6687 | <dd> |
6688 | <div·class="block">Finds·the·index·file·associated·with·the·provided·SAM·file.</div> | 6688 | <div·class="block">Finds·the·index·file·associated·with·the·provided·SAM·file.</div> |
6689 | </dd> | 6689 | </dd> |
6690 | <dt><a·href="htsjdk/samtools/SamFiles.html#findIndex(java.nio.file.Path)"·class="member-name-link">findIndex(Path)</a>·-·Static·method·in·class·htsjdk.samtools.<a·href="htsjdk/samtools/SamFiles.html"·title="class·in·htsjdk.samtools">SamFiles</a></dt> | 6690 | <dt><a·href="htsjdk/samtools/SamFiles.html#findIndex(java.nio.file.Path)"·class="member-name-link">findIndex(Path)</a>·-·Static·method·in·class·htsjdk.samtools.<a·href="htsjdk/samtools/SamFiles.html"·title="class·in·htsjdk.samtools">SamFiles</a></dt> |
6691 | <dd> | 6691 | <dd> |
Offset 5342, 22 lines modified | Offset 5342, 22 lines modified | ||
5342 | ··_\x8f_\x8i_\x8n_\x8d_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8C_\x8l_\x8a_\x8s_\x8s_\x8<_\x8?_\x8>_\x8)·-·Method·in·class·htsjdk.utils._\x8C_\x8l_\x8a_\x8s_\x8s_\x8F_\x8i_\x8n_\x8d_\x8e_\x8r | 5342 | ··_\x8f_\x8i_\x8n_\x8d_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8,_\x8·_\x8C_\x8l_\x8a_\x8s_\x8s_\x8<_\x8?_\x8>_\x8)·-·Method·in·class·htsjdk.utils._\x8C_\x8l_\x8a_\x8s_\x8s_\x8F_\x8i_\x8n_\x8d_\x8e_\x8r |
5343 | ······Scans·the·classpath·for·classes·within·the·specified·package·and·sub- | 5343 | ······Scans·the·classpath·for·classes·within·the·specified·package·and·sub- |
5344 | ······packages·that·extend·the·parentType. | 5344 | ······packages·that·extend·the·parentType. |
5345 | ··_\x8f_\x8i_\x8n_\x8d_\x8(_\x8L_\x8i_\x8s_\x8t_\x8<_\x8C_\x8R_\x8A_\x8I_\x8E_\x8n_\x8t_\x8r_\x8y_\x8>_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Static·method·in·class | 5345 | ··_\x8f_\x8i_\x8n_\x8d_\x8(_\x8L_\x8i_\x8s_\x8t_\x8<_\x8C_\x8R_\x8A_\x8I_\x8E_\x8n_\x8t_\x8r_\x8y_\x8>_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8,_\x8·_\x8i_\x8n_\x8t_\x8)·-·Static·method·in·class |
5346 | ··htsjdk.samtools.cram._\x8C_\x8R_\x8A_\x8I_\x8I_\x8n_\x8d_\x8e_\x8x | 5346 | ··htsjdk.samtools.cram._\x8C_\x8R_\x8A_\x8I_\x8I_\x8n_\x8d_\x8e_\x8x |
5347 | ······Currently·unused,·but·retained·for·the·native·rai·query·implementation | 5347 | ······Currently·unused,·but·retained·for·the·native·rai·query·implementation |
5348 | ··_\x8f_\x8i_\x8n_\x8d_\x8A_\x8n_\x8d_\x8L_\x8o_\x8a_\x8d_\x8S_\x8e_\x8q_\x8u_\x8e_\x8n_\x8c_\x8e_\x8D_\x8i_\x8c_\x8t_\x8i_\x8o_\x8n_\x8a_\x8r_\x8y_\x8(_\x8P_\x8a_\x8t_\x8h_\x8)·-·Method·in·class | 5348 | ··_\x8f_\x8i_\x8n_\x8d_\x8A_\x8n_\x8d_\x8L_\x8o_\x8a_\x8d_\x8S_\x8e_\x8q_\x8u_\x8e_\x8n_\x8c_\x8e_\x8D_\x8i_\x8c_\x8t_\x8i_\x8o_\x8n_\x8a_\x8r_\x8y_\x8(_\x8P_\x8a_\x8t_\x8h_\x8)·-·Method·in·class |
5349 | ··htsjdk.samtools.reference._\x8I_\x8n_\x8d_\x8e_\x8x_\x8e_\x8d_\x8F_\x8a_\x8s_\x8t_\x8a_\x8S_\x8e_\x8q_\x8u_\x8e_\x8n_\x8c_\x8e_\x8F_\x8i_\x8l_\x8e | 5349 | ··htsjdk.samtools.reference._\x8B_.l_.o_.c_.k_.C_.o_.m_.p_.r_.e_.s_.s_.e_.d_.I_\x8n_\x8d_\x8e_\x8x_\x8e_\x8d_\x8F_\x8a_\x8s_\x8t_\x8a_\x8S_\x8e_\x8q_\x8u_\x8e_\x8n_\x8c_\x8e_\x8F_\x8i_\x8l_\x8e |
5350 | ······Attempts·to·find·and·load·the·sequence·dictionary·if·present. | 5350 | ······Attempts·to·find·and·load·the·sequence·dictionary·if·present. |
5351 | ··_\x8f_\x8i_\x8n_\x8d_\x8B_\x8y_\x8I_\x8n_\x8d_\x8e_\x8x_\x8(_\x8i_\x8n_\x8t_\x8)·-·Method·in·class·htsjdk.samtools.util._\x8I_\x8n_\x8t_\x8e_\x8r_\x8v_\x8a_\x8l_\x8T_\x8r_\x8e_\x8e | 5351 | ··_\x8f_\x8i_\x8n_\x8d_\x8B_\x8y_\x8I_\x8n_\x8d_\x8e_\x8x_\x8(_\x8i_\x8n_\x8t_\x8)·-·Method·in·class·htsjdk.samtools.util._\x8I_\x8n_\x8t_\x8e_\x8r_\x8v_\x8a_\x8l_\x8T_\x8r_\x8e_\x8e |
5352 | ······Find·the·nth·interval·in·the·tree. | 5352 | ······Find·the·nth·interval·in·the·tree. |
5353 | ··_\x8f_\x8i_\x8n_\x8d_\x8B_\x8y_\x8N_\x8a_\x8m_\x8e_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8)·-·Static·method·in·enum·class·htsjdk.samtools._\x8S_\x8A_\x8M_\x8F_\x8l_\x8a_\x8g | 5353 | ··_\x8f_\x8i_\x8n_\x8d_\x8B_\x8y_\x8N_\x8a_\x8m_\x8e_\x8(_\x8S_\x8t_\x8r_\x8i_\x8n_\x8g_\x8)·-·Static·method·in·enum·class·htsjdk.samtools._\x8S_\x8A_\x8M_\x8F_\x8l_\x8a_\x8g |
5354 | ······ | 5354 | ······ |
5355 | ··_\x8f_\x8i_\x8n_\x8d_\x8F_\x8a_\x8s_\x8t_\x8a_\x8I_\x8n_\x8d_\x8e_\x8x_\x8(_\x8P_\x8a_\x8t_\x8h_\x8)·-·Static·method·in·class | 5355 | ··_\x8f_\x8i_\x8n_\x8d_\x8F_\x8a_\x8s_\x8t_\x8a_\x8I_\x8n_\x8d_\x8e_\x8x_\x8(_\x8P_\x8a_\x8t_\x8h_\x8)·-·Static·method·in·class |
5356 | ··htsjdk.samtools.reference._\x8I_\x8n_\x8d_\x8e_\x8x_\x8e_\x8d_\x8F_\x8a_\x8s_\x8t_\x8a_\x8S_\x8e_\x8q_\x8u_\x8e_\x8n_\x8c_\x8e_\x8F_\x8i_\x8l_\x8e | 5356 | ··htsjdk.samtools.reference._\x8B_.l_.o_.c_.k_.C_.o_.m_.p_.r_.e_.s_.s_.e_.d_.I_\x8n_\x8d_\x8e_\x8x_\x8e_\x8d_\x8F_\x8a_\x8s_\x8t_\x8a_\x8S_\x8e_\x8q_\x8u_\x8e_\x8n_\x8c_\x8e_\x8F_\x8i_\x8l_\x8e |
5357 | ······ | 5357 | ······ |
5358 | ··_\x8f_\x8i_\x8n_\x8d_\x8I_\x8n_\x8d_\x8e_\x8x_\x8(_\x8F_\x8i_\x8l_\x8e_\x8)·-·Static·method·in·class·htsjdk.samtools._\x8S_\x8a_\x8m_\x8F_\x8i_\x8l_\x8e_\x8s | 5358 | ··_\x8f_\x8i_\x8n_\x8d_\x8I_\x8n_\x8d_\x8e_\x8x_\x8(_\x8F_\x8i_\x8l_\x8e_\x8)·-·Static·method·in·class·htsjdk.samtools._\x8S_\x8a_\x8m_\x8F_\x8i_\x8l_\x8e_\x8s |
5359 | ······Finds·the·index·file·associated·with·the·provided·SAM·file. | 5359 | ······Finds·the·index·file·associated·with·the·provided·SAM·file. |
5360 | ··_\x8f_\x8i_\x8n_\x8d_\x8I_\x8n_\x8d_\x8e_\x8x_\x8(_\x8P_\x8a_\x8t_\x8h_\x8)·-·Static·method·in·class·htsjdk.samtools._\x8S_\x8a_\x8m_\x8F_\x8i_\x8l_\x8e_\x8s | 5360 | ··_\x8f_\x8i_\x8n_\x8d_\x8I_\x8n_\x8d_\x8e_\x8x_\x8(_\x8P_\x8a_\x8t_\x8h_\x8)·-·Static·method·in·class·htsjdk.samtools._\x8S_\x8a_\x8m_\x8F_\x8i_\x8l_\x8e_\x8s |
5361 | ······Finds·the·index·file·associated·with·the·provided·SAM·file. | 5361 | ······Finds·the·index·file·associated·with·the·provided·SAM·file. |
5362 | ··_\x8f_\x8i_\x8n_\x8d_\x8L_\x8a_\x8s_\x8t_\x8A_\x8l_\x8i_\x8g_\x8n_\x8e_\x8d_\x8E_\x8n_\x8t_\x8r_\x8y_\x8(_\x8L_\x8i_\x8s_\x8t_\x8<_\x8C_\x8R_\x8A_\x8I_\x8E_\x8n_\x8t_\x8r_\x8y_\x8>_\x8)·-·Static·method·in·class | 5362 | ··_\x8f_\x8i_\x8n_\x8d_\x8L_\x8a_\x8s_\x8t_\x8A_\x8l_\x8i_\x8g_\x8n_\x8e_\x8d_\x8E_\x8n_\x8t_\x8r_\x8y_\x8(_\x8L_\x8i_\x8s_\x8t_\x8<_\x8C_\x8R_\x8A_\x8I_\x8E_\x8n_\x8t_\x8r_\x8y_\x8>_\x8)·-·Static·method·in·class |
5363 | ··htsjdk.samtools.cram._\x8C_\x8R_\x8A_\x8I_\x8I_\x8n_\x8d_\x8e_\x8x | 5363 | ··htsjdk.samtools.cram._\x8C_\x8R_\x8A_\x8I_\x8I_\x8n_\x8d_\x8e_\x8x |
Offset 8165, 29 lines modified | Offset 8165, 29 lines modified | ||
8165 | },·{ | 8165 | },·{ |
8166 | ····"p":·"htsjdk.utils", | 8166 | ····"p":·"htsjdk.utils", |
8167 | ····"c":·"ClassFinder", | 8167 | ····"c":·"ClassFinder", |
8168 | ····"l":·"find(String,·Class<?>)", | 8168 | ····"l":·"find(String,·Class<?>)", |
8169 | ····"u":·"find(java.lang.String,java.lang.Class)" | 8169 | ····"u":·"find(java.lang.String,java.lang.Class)" |
8170 | },·{ | 8170 | },·{ |
8171 | ····"p":·"htsjdk.samtools.reference", | 8171 | ····"p":·"htsjdk.samtools.reference", |
8172 | ····"c":·"IndexedFastaSequenceFile", | 8172 | ····"c":·"BlockCompressedIndexedFastaSequenceFile", |
8173 | ····"l":·"findAndLoadSequenceDictionary(Path)", | 8173 | ····"l":·"findAndLoadSequenceDictionary(Path)", |
8174 | ····"u":·"findAndLoadSequenceDictionary(java.nio.file.Path)" | 8174 | ····"u":·"findAndLoadSequenceDictionary(java.nio.file.Path)" |
8175 | },·{ | 8175 | },·{ |
8176 | ····"p":·"htsjdk.samtools.util", | 8176 | ····"p":·"htsjdk.samtools.util", |
8177 | ····"c":·"IntervalTree", | 8177 | ····"c":·"IntervalTree", |
8178 | ····"l":·"findByIndex(int)" | 8178 | ····"l":·"findByIndex(int)" |
8179 | },·{ | 8179 | },·{ |
8180 | ····"p":·"htsjdk.samtools", | 8180 | ····"p":·"htsjdk.samtools", |
8181 | ····"c":·"SAMFlag", | 8181 | ····"c":·"SAMFlag", |
8182 | ····"l":·"findByName(String)", | 8182 | ····"l":·"findByName(String)", |
8183 | ····"u":·"findByName(java.lang.String)" | 8183 | ····"u":·"findByName(java.lang.String)" |
8184 | },·{ | 8184 | },·{ |
8185 | ····"p":·"htsjdk.samtools.reference", | 8185 | ····"p":·"htsjdk.samtools.reference", |
8186 | ····"c":·"IndexedFastaSequenceFile", | 8186 | ····"c":·"BlockCompressedIndexedFastaSequenceFile", |
8187 | ····"l":·"findFastaIndex(Path)", | 8187 | ····"l":·"findFastaIndex(Path)", |
8188 | ····"u":·"findFastaIndex(java.nio.file.Path)" | 8188 | ····"u":·"findFastaIndex(java.nio.file.Path)" |
8189 | },·{ | 8189 | },·{ |
8190 | ····"p":·"htsjdk.samtools", | 8190 | ····"p":·"htsjdk.samtools", |
8191 | ····"c":·"SamFiles", | 8191 | ····"c":·"SamFiles", |
8192 | ····"l":·"findIndex(File)", | 8192 | ····"l":·"findIndex(File)", |
8193 | ····"u":·"findIndex(java.io.File)" | 8193 | ····"u":·"findIndex(java.io.File)" |