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| 1 | -rw-r--r--···0········0········0········4·2024-02-29·01:53:34.000000·debian-binary | 1 | -rw-r--r--···0········0········0········4·2024-02-29·01:53:34.000000·debian-binary |
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| 1 | Package:·gromacs-data | 1 | Package:·gromacs-data |
| 2 | Source:·gromacs | 2 | Source:·gromacs |
| 3 | Version:·2024.1-1 | 3 | Version:·2024.1-1 |
| 4 | Architecture:·all | 4 | Architecture:·all |
| 5 | Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org> | 5 | Maintainer:·Debichem·Team·<debichem-devel@lists.alioth.debian.org> |
| 6 | Installed-Size:·29858 | 6 | Installed-Size:·298584 |
| 7 | Depends:·libjs-mathjax | 7 | Depends:·libjs-mathjax |
| 8 | Recommends:·gromacs | 8 | Recommends:·gromacs |
| 9 | Section:·science | 9 | Section:·science |
| 10 | Priority:·optional | 10 | Priority:·optional |
| 11 | Multi-Arch:·foreign | 11 | Multi-Arch:·foreign |
| 12 | Homepage:·https://www.gromacs.org/ | 12 | Homepage:·https://www.gromacs.org/ |
| 13 | Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation | 13 | Description:·GROMACS·molecular·dynamics·sim,·data·and·documentation |
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| 74 | </div><!--·top·--> | 74 | </div><!--·top·--> |
| 75 | <div><div·class="header"> | 75 | <div><div·class="header"> |
| 76 | ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div> | 76 | ··<div·class="headertitle"><div·class="title">Module·dependency·graph</div></div> |
| 77 | </div><!--header--> | 77 | </div><!--header--> |
| 78 | <div·class="contents"> | 78 | <div·class="contents"> |
| 79 | <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p> | 79 | <div·class="textblock"><p>The·graph·below·shows·the·dependencies·between·the·source·code·modules,·computed·from·include·statements·in·the·code.·For·documented·modules·(those·that·do·not·have·a·gray·background),·clicking·on·the·module·takes·you·to·the·module·documentation.·Legend·for·the·graph·can·be·found·below·the·graph.</p> |
| 80 | <div·class="dotgraph"> | 80 | <div·class="dotgraph"> |
| 81 | <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width=" | 81 | <iframe·scrolling="no"·frameborder="0"·src="dot_module-deps.svg"·width="3863"·height="1462"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div> |
| 82 | ·<h1><a·class="anchor"·id="autotoc_md49"></a> | 82 | ·<h1><a·class="anchor"·id="autotoc_md49"></a> |
| 83 | Legend</h1> | 83 | Legend</h1> |
| 84 | <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p> | 84 | <p>The·graph·below·annotates·the·colors·and·line·styles·used·in·the·module·dependency·graph·above.·More·detailed·textual·annotation·is·below·the·graph.</p> |
| 85 | <div·class="dotgraph"> | 85 | <div·class="dotgraph"> |
| 86 | <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div> | 86 | <iframe·scrolling="no"·frameborder="0"·src="dot_inline_dotgraph_2.svg"·width="440"·height="407"><p><b>This·browser·is·not·able·to·show·SVG:·try·Firefox,·Chrome,·Safari,·or·Opera·instead.</b></p></iframe></div> |
| 87 | <p>Node·colors:·</p><dl> | 87 | <p>Node·colors:·</p><dl> |
| 88 | <dt>gray·background·</dt> | 88 | <dt>gray·background·</dt> |
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| 105 | ····['makeperturbedlj14params_74',·['makePerturbedLJ14Params',·['../namespacegmx_1_1anonymous__namespace_02topsort_8cpp_03.xhtml#a219912ab4897d2bd79841029e509036f',·1,·'gmx::anonymous_namespace{topsort.cpp}']]], | 105 | ····['makeperturbedlj14params_74',·['makePerturbedLJ14Params',·['../namespacegmx_1_1anonymous__namespace_02topsort_8cpp_03.xhtml#a219912ab4897d2bd79841029e509036f',·1,·'gmx::anonymous_namespace{topsort.cpp}']]], |
| 106 | ····['makeplan_75',·['makePlan',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#aac2d74bc36d942b818b853a7a2fe0819',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]], | 106 | ····['makeplan_75',·['makePlan',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#aac2d74bc36d942b818b853a7a2fe0819',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]], |
| 107 | ····['makepreprocessoroptions_76',·['makePreprocessorOptions',·['../ocl__compiler_8cpp.xhtml#a153ca6bd9b7d0c8003b267169ab0b0e1',·1,·'gmx::ocl']]], | 107 | ····['makepreprocessoroptions_76',·['makePreprocessorOptions',·['../ocl__compiler_8cpp.xhtml#a153ca6bd9b7d0c8003b267169ab0b0e1',·1,·'gmx::ocl']]], |
| 108 | ····['makeprogramfromcache_77',·['makeProgramFromCache',·['../ocl__caching_8cpp.xhtml#a9f9b1fc653bcb02f7f46e5bd6bb2f05d',·1,·'gmx::ocl']]], | 108 | ····['makeprogramfromcache_77',·['makeProgramFromCache',·['../ocl__caching_8cpp.xhtml#a9f9b1fc653bcb02f7f46e5bd6bb2f05d',·1,·'gmx::ocl']]], |
| 109 | ····['makerandomseed_78',·['makeRandomSeed',·['../namespacegmx.xhtml#a36cfc66dfee3ab6a934e04486bbf05e6',·1,·'gmx']]], | 109 | ····['makerandomseed_78',·['makeRandomSeed',·['../namespacegmx.xhtml#a36cfc66dfee3ab6a934e04486bbf05e6',·1,·'gmx']]], |
| 110 | ····['makerandomseedinternal_79',·['makeRandomSeedInternal',·['../namespacegmx.xhtml#ab08f1195b83d7128d3c4000aa22ba0e8',·1,·'gmx']]], | 110 | ····['makerandomseedinternal_79',·['makeRandomSeedInternal',·['../namespacegmx.xhtml#ab08f1195b83d7128d3c4000aa22ba0e8',·1,·'gmx']]], |
| 111 | ····['makerealstrides_80',·['makeRealStrides',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a0c29c98856bc6245820f6bd5ca830bba',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]], | 111 | ····['makerealstrides_80',·['makeRealStrides',·['../namespacegmx_1_1anonymous__namespace_02gpu__3dfft__sycl__rocfft_8cpp_03.xhtml#a0c29c98856bc6245820f6bd5ca830bba',·1,·'gmx::anonymous_namespace{gpu_3dfft_sycl_rocfft.cpp}']]], |
| 112 | ····['makerefdatafilename_81',·['makerefdatafilename',·['../namespacegmx_1_1test.xhtml#a186c4a54149691e05141d4bd2355a861',·1,·'gmx::test::makeRefDataFileName()'], | ||
| 112 | ···· | 113 | ········['../namespacegmx_1_1test_1_1anonymous__namespace_02pmetest_8cpp_03.xhtml#af070fa4b5e37706561c293db35d39f1f',·1,·'gmx::test::anonymous_namespace{pmetest.cpp}::makeRefDataFileName()'] |
| 113 | ········['../namespacegmx_1_1test.xhtml#a186c4a54149691e05141d4bd2355a861',·1,·'gmx::test::makeRefDataFileName()'] | ||
| 114 | ····]], | 114 | ····]], |
| 115 | ····['makereffrompointer_82',·['makeRefFromPointer',·['../namespacegmx.xhtml#a0c88c8ee70d81b75a8377ee38ed659b9',·1,·'gmx']]], | 115 | ····['makereffrompointer_82',·['makeRefFromPointer',·['../namespacegmx.xhtml#a0c88c8ee70d81b75a8377ee38ed659b9',·1,·'gmx']]], |
| 116 | ····['makervecarray_83',·['makeRvecArray',·['../state_8h.xhtml#aa69dfdec392ef5ac146b0b4f508ee9d9',·1,·'state.cpp']]], | 116 | ····['makervecarray_83',·['makeRvecArray',·['../state_8h.xhtml#aa69dfdec392ef5ac146b0b4f508ee9d9',·1,·'state.cpp']]], |
| 117 | ····['makesimpletopology_84',·['makeSimpleTopology',·['../classanonymous__namespace_02indexutil_8cpp_03_1_1IndexBlockTest.xhtml#ae2a783ea7f644aec26c5c36688e73c0b',·1,·'anonymous_namespace{indexutil.cpp}::IndexBlockTest']]], | 117 | ····['makesimpletopology_84',·['makeSimpleTopology',·['../classanonymous__namespace_02indexutil_8cpp_03_1_1IndexBlockTest.xhtml#ae2a783ea7f644aec26c5c36688e73c0b',·1,·'anonymous_namespace{indexutil.cpp}::IndexBlockTest']]], |
| 118 | ····['makesimulationinput_85',·['makeSimulationInput',·['../group__module__mdrun.xhtml#gae18c40e552af59d3ac816c1b943a57bc',·1,·'gmx']]], | 118 | ····['makesimulationinput_85',·['makeSimulationInput',·['../group__module__mdrun.xhtml#gae18c40e552af59d3ac816c1b943a57bc',·1,·'gmx']]], |
| 119 | ····['makesolvekernel_86',·['makeSolveKernel',·['../pme__solve__sycl_8cpp.xhtml#a64e706e97c6587265b3b42ceace902ce',·1,·'pme_solve_sycl.cpp']]], | 119 | ····['makesolvekernel_86',·['makeSolveKernel',·['../pme__solve__sycl_8cpp.xhtml#a64e706e97c6587265b3b42ceace902ce',·1,·'pme_solve_sycl.cpp']]], |
| 120 | ····['makespreadkernel_87',·['makeSpreadKernel',·['../namespacegmx_1_1anonymous__namespace_02densityfittingforceprovider_8cpp_03.xhtml#a71d9cb1e033ddafcc72c5c7285386360',·1,·'gmx::anonymous_namespace{densityfittingforceprovider.cpp}']]], | 120 | ····['makespreadkernel_87',·['makeSpreadKernel',·['../namespacegmx_1_1anonymous__namespace_02densityfittingforceprovider_8cpp_03.xhtml#a71d9cb1e033ddafcc72c5c7285386360',·1,·'gmx::anonymous_namespace{densityfittingforceprovider.cpp}']]], |
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| 461 | ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'], | 461 | ········['../namespacegmx.xhtml#aa9e7df55e017bd726d027d65551bbd0ca6adf97f83acf6453d4a6a4b1070f3754',·1,·'gmx::None'], |
| 462 | ········['../pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791a6adf97f83acf6453d4a6a4b1070f3754',·1,·'None: pme.h'], | 462 | ········['../pme_8h.xhtml#adc082ed1af9a4868af13352373ed3791a6adf97f83acf6453d4a6a4b1070f3754',·1,·'None: pme.h'], |
| 463 | ········['../namespacegmx.xhtml#aab37976982b986b87613d521381fcb6aa334c4a4c42fdb79d7ebc3e73b517e6f8',·1,·'gmx::none'] | 463 | ········['../namespacegmx.xhtml#aab37976982b986b87613d521381fcb6aa334c4a4c42fdb79d7ebc3e73b517e6f8',·1,·'gmx::none'] |
| 464 | ····]], | 464 | ····]], |
| 465 | ····['nonexistent_286',·['Nonexistent',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a4ae5e9809862b352a35922a5bcb1bdf3',·1,·'device_information.h']]], | 465 | ····['nonexistent_286',·['Nonexistent',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a4ae5e9809862b352a35922a5bcb1bdf3',·1,·'device_information.h']]], |
| 466 | ····['nonfunctional_287',·['NonFunctional',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a836c1376187303303ffb10b26f2a4422',·1,·'device_information.h']]], | 466 | ····['nonfunctional_287',·['NonFunctional',·['../device__information_8h.xhtml#a0b85af2bfbb9599409b639e98717c888a836c1376187303303ffb10b26f2a4422',·1,·'device_information.h']]], |
| 467 | ····['nonlinear_288',·['nonlinear',·['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a47e3d35ab4249db25f1467971d8aba21',·1,·'gmx::NonLinear'], | ||
| 468 | ····· | 467 | ····['nonlinear_288',·['nonlinear',·['../classgmx_1_1VirtualSitesHandler.xhtml#a9bc9f8f9c0f9558d09bf4b5ed0273e3ba47e3d35ab4249db25f1467971d8aba21',·1,·'gmx::VirtualSitesHandler::NonLinear'], |
| 468 | ········['../namespacegmx.xhtml#a63cf11bdf7c50436e7a754d50689f362a47e3d35ab4249db25f1467971d8aba21',·1,·'gmx::NonLinear'] | ||
| 469 | ····]], | 469 | ····]], |
| 470 | ····['nonlocal_289',·['nonlocal',·['../namespacegmx.xhtml#a84de1dccdfb142b80c42b0b19f8c6548aedf6f2af1e5ce85c8f9ff667192169d0',·1,·'gmx::NonLocal'], | 470 | ····['nonlocal_289',·['nonlocal',·['../namespacegmx.xhtml#a84de1dccdfb142b80c42b0b19f8c6548aedf6f2af1e5ce85c8f9ff667192169d0',·1,·'gmx::NonLocal'], |
| 471 | ········['../namespacegmx.xhtml#a8593d10460a38e0d418692d63f962521aedf6f2af1e5ce85c8f9ff667192169d0',·1,·'gmx::NonLocal'] | 471 | ········['../namespacegmx.xhtml#a8593d10460a38e0d418692d63f962521aedf6f2af1e5ce85c8f9ff667192169d0',·1,·'gmx::NonLocal'] |
| 472 | ····]], | 472 | ····]], |
| 473 | ····['nonlocal_5fdone_290',·['nonlocal_done',·['../structNbnxmGpu.xhtml#a7c7aea1f8edd8460d24b4a36d07f1984',·1,·'NbnxmGpu']]], | 473 | ····['nonlocal_5fdone_290',·['nonlocal_done',·['../structNbnxmGpu.xhtml#a7c7aea1f8edd8460d24b4a36d07f1984',·1,·'NbnxmGpu']]], |
| 474 | ····['nooptionaloutput_291',·['NoOptionalOutput',·['../classgmx_1_1test_1_1NoOptionalOutput.xhtml',·1,·'gmx::test']]], | 474 | ····['nooptionaloutput_291',·['NoOptionalOutput',·['../classgmx_1_1test_1_1NoOptionalOutput.xhtml',·1,·'gmx::test']]], |
| 475 | ····['nopbcjumps_292',·['NoPBCJumps',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a3c9450d09d1b92477398f1a26bbb11bf',·1,·'gmx']]], | 475 | ····['nopbcjumps_292',·['NoPBCJumps',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a3c9450d09d1b92477398f1a26bbb11bf',·1,·'gmx']]], |
| 476 | ····['norder_293',·['nOrder',·['../classgmx_1_1Lincs.xhtml#a916d6e0a08223001ef38a5b74043ab38',·1,·'gmx::Lincs']]], | 476 | ····['norder_293',·['nOrder',·['../classgmx_1_1Lincs.xhtml#a916d6e0a08223001ef38a5b74043ab38',·1,·'gmx::Lincs']]], |
| 477 | ····['norm_294',·['norm',·['../namespacegmx.xhtml#ac4968e669f258a20e94e885b49ef2934',·1,·'gmx::norm()'], | ||
| 478 | ····· | 477 | ····['norm_294',·['norm',·['../classgmx_1_1BasicVector.xhtml#aad63bfd2384a9d1f876b925ee95de1dc',·1,·'gmx::BasicVector::norm()'], |
| 478 | ········['../namespacegmx.xhtml#ac4968e669f258a20e94e885b49ef2934',·1,·'gmx::norm(BasicVector<·ValueType·>·v)'], | ||
| 479 | ········['../namespacegmx.xhtml#abfc89b990a48f86125d9437b6050be46',·1,·'gmx::norm(T·*v)'] | 479 | ········['../namespacegmx.xhtml#abfc89b990a48f86125d9437b6050be46',·1,·'gmx::norm(T·*v)'] |
| 480 | ····]], | 480 | ····]], |
| 481 | ····['norm2_295',·['norm2',·['../namespacegmx.xhtml#a9e1713a0b402535e1f59ebd7cf4d1b5b',·1,·'gmx::norm2()'], | 481 | ····['norm2_295',·['norm2',·['../namespacegmx.xhtml#a9e1713a0b402535e1f59ebd7cf4d1b5b',·1,·'gmx::norm2()'], |
| 482 | ········['../classgmx_1_1BasicVector.xhtml#aac10162bd5e4aeae070a245d55404164',·1,·'gmx::BasicVector::norm2()'] | 482 | ········['../classgmx_1_1BasicVector.xhtml#aac10162bd5e4aeae070a245d55404164',·1,·'gmx::BasicVector::norm2()'] |
| 483 | ····]], | 483 | ····]], |
| 484 | ····['norm_5fand_5fscale_5fvectors_296',·['norm_and_scale_vectors',·['../autocorr_8cpp.xhtml#ae225e0667d9a6856ba697f31ecc40ade',·1,·'autocorr.cpp']]], | 484 | ····['norm_5fand_5fscale_5fvectors_296',·['norm_and_scale_vectors',·['../autocorr_8cpp.xhtml#ae225e0667d9a6856ba697f31ecc40ade',·1,·'autocorr.cpp']]], |
| 485 | ····['normal_297',·['Normal',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319a960b44c579bc2f6818d2daaf9e4c16f0',·1,·'device_stream.h']]], | 485 | ····['normal_297',·['Normal',·['../device__stream_8h.xhtml#a745c3a25d092600ae45b68d7e73d8319a960b44c579bc2f6818d2daaf9e4c16f0',·1,·'device_stream.h']]], |
| 486 | ····['normaldistribution_298',·['normaldistribution',·['../ | 486 | ····['normaldistribution_298',·['normaldistribution',·['../structUmbrellaOptions.xhtml#a473f1363f6af80b169a66c49e0806794',·1,·'UmbrellaOptions::normalDistribution'], |
| 487 | ········['../classgmx_1_1NormalDistribution.xhtml#a06215348b437434202cda73d44de8c99',·1,·'gmx::NormalDistribution::NormalDistribution( | 487 | ········['../classgmx_1_1NormalDistribution.xhtml#a06215348b437434202cda73d44de8c99',·1,·'gmx::NormalDistribution::NormalDistribution()'], |
| 488 | ········['../classgmx_1_1NormalDistribution.xhtml',·1,·'gmx::NormalDistribution<·RealType·>'], | 488 | ········['../classgmx_1_1NormalDistribution.xhtml',·1,·'gmx::NormalDistribution<·RealType·>'], |
| 489 | ········['../s | 489 | ········['../classgmx_1_1NormalDistribution.xhtml#a96caccdbb3d6390fcb152f6f6a38a2e1',·1,·'gmx::NormalDistribution::NormalDistribution()'] |
| 490 | ····]], | 490 | ····]], |
| 491 | ····['normaldistribution_2ecpp_299',·['normaldistribution.cpp',·['../normaldistribution_8cpp.xhtml',·1,·'']]], | 491 | ····['normaldistribution_2ecpp_299',·['normaldistribution.cpp',·['../normaldistribution_8cpp.xhtml',·1,·'']]], |
| 492 | ····['normaldistribution_2eh_300',·['normaldistribution.h',·['../normaldistribution_8h.xhtml',·1,·'']]], | 492 | ····['normaldistribution_2eh_300',·['normaldistribution.h',·['../normaldistribution_8h.xhtml',·1,·'']]], |
| 493 | ····['normalization_301',·['normalization',·['../namespacegmx.xhtml#a35a656f58d79c7258c8b6e0141bd440b',·1,·'gmx::Normalization'], | ||
| 494 | ····· | 493 | ····['normalization_301',·['normalization',·['../group__module__trajectoryanalysis.xhtml#ga8dc818a96d0962c8bcb8f3c080d565c8',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}::Normalization'], |
| 494 | ········['../namespacegmx.xhtml#a35a656f58d79c7258c8b6e0141bd440b',·1,·'gmx::Normalization'] | ||
| 495 | ····]], | 495 | ····]], |
| 496 | ····['normalizationtype_5f_302',·['normalizationType_',·['../classgmx_1_1AwhEnergyBlock.xhtml#a13a7cdfa3b51a59d927b3a6dc101bb48',·1,·'gmx::AwhEnergyBlock']]], | 496 | ····['normalizationtype_5f_302',·['normalizationType_',·['../classgmx_1_1AwhEnergyBlock.xhtml#a13a7cdfa3b51a59d927b3a6dc101bb48',·1,·'gmx::AwhEnergyBlock']]], |
| 497 | ····['normalizationvalue_5f_303',·['normalizationValue_',·['../classgmx_1_1AwhEnergyBlock.xhtml#ad7c3727d885b1c8276f38bcb8d770dd4',·1,·'gmx::AwhEnergyBlock']]], | 497 | ····['normalizationvalue_5f_303',·['normalizationValue_',·['../classgmx_1_1AwhEnergyBlock.xhtml#ad7c3727d885b1c8276f38bcb8d770dd4',·1,·'gmx::AwhEnergyBlock']]], |
| 498 | ····['normalize_5facf_304',·['normalize_acf',·['../autocorr_8cpp.xhtml#a415d5aa1ec90e0366c9754df28f3e180',·1,·'autocorr.cpp']]], | 498 | ····['normalize_5facf_304',·['normalize_acf',·['../autocorr_8cpp.xhtml#a415d5aa1ec90e0366c9754df28f3e180',·1,·'autocorr.cpp']]], |
| 499 | ····['normalizeblock_305',·['normalizeBlock',·['../namespacegmx.xhtml#a70bac9d01a06d35dc45d86a6bdba4f06',·1,·'gmx']]], | 499 | ····['normalizeblock_305',·['normalizeBlock',·['../namespacegmx.xhtml#a70bac9d01a06d35dc45d86a6bdba4f06',·1,·'gmx']]], |
| 500 | ····['normalizedensities_5f_306',·['normalizeDensities_',·['../structgmx_1_1DensityFittingParameters.xhtml#a108b0f7f69ade1010f60a941430e1434',·1,·'gmx::DensityFittingParameters']]], | 500 | ····['normalizedensities_5f_306',·['normalizeDensities_',·['../structgmx_1_1DensityFittingParameters.xhtml#a108b0f7f69ade1010f60a941430e1434',·1,·'gmx::DensityFittingParameters']]], |
| 501 | ····['normalizefreeenergyandpmfsum_307',·['normalizefreeenergyandpmfsum',·['../namespacegmx.xhtml#ac1a9213632dd1a11d0ad5eb64eb211cc',·1,·'gmx::normalizeFreeEnergyAndPmfSum()'], | 501 | ····['normalizefreeenergyandpmfsum_307',·['normalizefreeenergyandpmfsum',·['../namespacegmx.xhtml#ac1a9213632dd1a11d0ad5eb64eb211cc',·1,·'gmx::normalizeFreeEnergyAndPmfSum()'], |
| 502 | ········['../classgmx_1_1PointState.xhtml#a9734176eb05174d67c84c4f6c1d44a6d',·1,·'gmx::PointState::normalizeFreeEnergyAndPmfSum()'] | 502 | ········['../classgmx_1_1PointState.xhtml#a9734176eb05174d67c84c4f6c1d44a6d',·1,·'gmx::PointState::normalizeFreeEnergyAndPmfSum()'] |
| 503 | ····]], | 503 | ····]], |
| 504 | ····['normalizeprobability_308',·['normalizeProbability',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abc1ff464523654b5de9dd88ee7c036b4',·1,·'gmx::AbstractAverageHistogram']]], | 504 | ····['normalizeprobability_308',·['normalizeProbability',·['../classgmx_1_1AbstractAverageHistogram.xhtml#abc1ff464523654b5de9dd88ee7c036b4',·1,·'gmx::AbstractAverageHistogram']]], |
| 505 | ····['normalizereferencedensity_309',·['normalizeReferenceDensity',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#aba089e24c17d4a809955ccb7fbcadd74',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]], | 505 | ····['normalizereferencedensity_309',·['normalizeReferenceDensity',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#aba089e24c17d4a809955ccb7fbcadd74',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup']]], |
| 506 | ····['normalizesumpositivevaluestounity_310',·['normalizeSumPositiveValuesToUnity',·['../namespacegmx.xhtml#a327f10cbb6dad34a7a108b93d3f5d4e1',·1,·'gmx']]], | 506 | ····['normalizesumpositivevaluestounity_310',·['normalizeSumPositiveValuesToUnity',·['../namespacegmx.xhtml#a327f10cbb6dad34a7a108b93d3f5d4e1',·1,·'gmx']]], |
| 507 | ····['normalizevalue_311',·['normalizevalue',·['../classgmx_1_1EnumOptionStorage.xhtml#a714ef64c0797beedd1ffe8193b7b35a8',·1,·'gmx::EnumOptionStorage::normalizeValue()'], | ||
| 507 | ···· | 508 | ········['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a7b800b3a96308ce591b6ae34cf5817b6',·1,·'gmx::OptionStorageTemplateSimple::normalizeValue()'] |
| 508 | ········['../classgmx_1_1EnumOptionStorage.xhtml#a714ef64c0797beedd1ffe8193b7b35a8',·1,·'gmx::EnumOptionStorage::normalizeValue()'] | ||
| 509 | ····]], | 509 | ····]], |
| 510 | ····['normalizevalues_312',·['normalizevalues',·['../classanonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a41d05ec823b0c59328fe0272416509cf',·1,·'anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::normalizeValues()'], | ||
| 510 | ···· | 511 | ········['../classgmx_1_1OptionInfo.xhtml#afa99b6a8d6f5e06151d7f3b0f8817cfa',·1,·'gmx::OptionInfo::normalizeValues()'], |
| 512 | ········['../classgmx_1_1AbstractOptionStorage.xhtml#a238bb8bb4773156da77fc2828453773e',·1,·'gmx::AbstractOptionStorage::normalizeValues()'], | ||
| 511 | ········['../classgmx_1_1SelectionOptionStorage.xhtml#acfb88582bb18c5a1876b8299e3097bc3',·1,·'gmx::SelectionOptionStorage::normalizeValues()'], | 513 | ········['../classgmx_1_1SelectionOptionStorage.xhtml#acfb88582bb18c5a1876b8299e3097bc3',·1,·'gmx::SelectionOptionStorage::normalizeValues()'], |
| 512 | ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#a3ae5bffb43f83750b8784665cafed6c2',·1,·'gmx::SelectionFileOptionStorage::normalizeValues()'], | 514 | ········['../classgmx_1_1SelectionFileOptionStorage.xhtml#a3ae5bffb43f83750b8784665cafed6c2',·1,·'gmx::SelectionFileOptionStorage::normalizeValues()'], |
| 513 | ········['../classanonymous__namespace_02abstractoptionstorage_8cpp_03_1_1MockOptionStorage.xhtml#a41d05ec823b0c59328fe0272416509cf',·1,·'anonymous_namespace{abstractoptionstorage.cpp}::MockOptionStorage::normalizeValues()'], | ||
| 514 | ········['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a24fb31501a4f2bcc6b4f8f4308b9737c',·1,·'gmx::OptionStorageTemplateSimple::normalizeValues()'] | 515 | ········['../classgmx_1_1OptionStorageTemplateSimple.xhtml#a24fb31501a4f2bcc6b4f8f4308b9737c',·1,·'gmx::OptionStorageTemplateSimple::normalizeValues()'] |
| 515 | ········['../classgmx_1_1AbstractOptionStorage.xhtml#a238bb8bb4773156da77fc2828453773e',·1,·'gmx::AbstractOptionStorage::normalizeValues()'] | ||
| 516 | ····]], | 516 | ····]], |
| 517 | ····['normalmodes_2ecpp_313',·['normalmodes.cpp',·['../normalmodes_8cpp.xhtml',·1,·'']]], | 517 | ····['normalmodes_2ecpp_313',·['normalmodes.cpp',·['../normalmodes_8cpp.xhtml',·1,·'']]], |
| 518 | ····['normalmodestest_314',·['NormalModesTest',·['../classgmx_1_1test_1_1anonymous__namespace_02normalmodes_8cpp_03_1_1NormalModesTest.xhtml',·1,·'gmx::test::anonymous_namespace{normalmodes.cpp}']]], | 518 | ····['normalmodestest_314',·['NormalModesTest',·['../classgmx_1_1test_1_1anonymous__namespace_02normalmodes_8cpp_03_1_1NormalModesTest.xhtml',·1,·'gmx::test::anonymous_namespace{normalmodes.cpp}']]], |
| 519 | ····['nosehoover_5fvxi_315',·['nosehoover_vxi',·['../classt__state.xhtml#a349969aa77c689a1aa3d2a3f903ad2b3',·1,·'t_state::nosehoover_vxi'], | 519 | ····['nosehoover_5fvxi_315',·['nosehoover_vxi',·['../classt__state.xhtml#a349969aa77c689a1aa3d2a3f903ad2b3',·1,·'t_state::nosehoover_vxi'], |
| 520 | ········['../structgmx_1_1PTCouplingArrays.xhtml#a6af6f95f1d4a30e290f6b724f0a313af',·1,·'gmx::PTCouplingArrays::nosehoover_vxi'] | 520 | ········['../structgmx_1_1PTCouplingArrays.xhtml#a6af6f95f1d4a30e290f6b724f0a313af',·1,·'gmx::PTCouplingArrays::nosehoover_vxi'] |
| 521 | ····]], | 521 | ····]], |
| 522 | ····['nosehoover_5fxi_316',·['nosehoover_xi',·['../structgmx_1_1PTCouplingArrays.xhtml#a611790ef9fc3907feed3c81b1c29b1db',·1,·'gmx::PTCouplingArrays::nosehoover_xi'], | 522 | ····['nosehoover_5fxi_316',·['nosehoover_xi',·['../structgmx_1_1PTCouplingArrays.xhtml#a611790ef9fc3907feed3c81b1c29b1db',·1,·'gmx::PTCouplingArrays::nosehoover_xi'], |
| Offset 535, 53 lines modified | Offset 535, 53 lines modified | ||
| 535 | ········['../classgmx_1_1Options.xhtml',·1,·'gmx::Options'] | 535 | ········['../classgmx_1_1Options.xhtml',·1,·'gmx::Options'] |
| 536 | ····]], | 536 | ····]], |
| 537 | ····['options_20options_174',·['Extensible·Handling·of·Options·(options)',·['../group__module__options.xhtml',·1,·'']]], | 537 | ····['options_20options_174',·['Extensible·Handling·of·Options·(options)',·['../group__module__options.xhtml',·1,·'']]], |
| 538 | ····['options_2ecpp_175',·['options.cpp',·['../options_8cpp.xhtml',·1,·'']]], | 538 | ····['options_2ecpp_175',·['options.cpp',·['../options_8cpp.xhtml',·1,·'']]], |
| 539 | ····['options_2eh_176',·['options.h',·['../api_2legacy_2include_2gromacs_2options_2options_8h.xhtml',·1,·'(Global·Namespace)'], | 539 | ····['options_2eh_176',·['options.h',·['../api_2legacy_2include_2gromacs_2options_2options_8h.xhtml',·1,·'(Global·Namespace)'], |
| 540 | ········['../src_2gromacs_2domdec_2options_8h.xhtml',·1,·'(Global·Namespace)'] | 540 | ········['../src_2gromacs_2domdec_2options_8h.xhtml',·1,·'(Global·Namespace)'] |
| 541 | ····]], | 541 | ····]], |
| 542 | ····['options_5f_177',·['options_',·['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a82e46f05bb9b7b80b013b6c614089228',·1,·'gmx::SelectionOptionManager::Impl::options_'], | ||
| 543 | ····· | 542 | ····['options_5f_177',·['options_',·['../classgmx_1_1CommandLineHelpWriter_1_1Impl.xhtml#a9baa833f1ccfd071e838765eb5de135e',·1,·'gmx::CommandLineHelpWriter::Impl::options_'], |
| 544 | ········['../classgmx_1_1test_1_1FlagTest.xhtml#af80844cb3a58c500effbefef505aab8b',·1,·'gmx::test::FlagTest::options_'], | 543 | ········['../classgmx_1_1test_1_1FlagTest.xhtml#af80844cb3a58c500effbefef505aab8b',·1,·'gmx::test::FlagTest::options_'], |
| 545 | ········['../classgmx_1_1OptionsAssigner_1_1Impl.xhtml#a292a0c6cfed7148f01a99b95d8f8d7f4',·1,·'gmx::OptionsAssigner::Impl::options_'], | ||
| 546 | ········['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a461bcb33bd4d0aed73b9a02f46963ba4',·1,·'gmx::DomainDecompositionBuilder::Impl::options_'], | 544 | ········['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a461bcb33bd4d0aed73b9a02f46963ba4',·1,·'gmx::DomainDecompositionBuilder::Impl::options_'], |
| 547 | ········['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#aa0b581c60a66865d20e59c0b7734729c',·1,·'gmx::internal::OptionSectionImpl::Group::options_'] | 545 | ········['../classgmx_1_1internal_1_1OptionSectionImpl_1_1Group.xhtml#aa0b581c60a66865d20e59c0b7734729c',·1,·'gmx::internal::OptionSectionImpl::Group::options_'], |
| 546 | ········['../classgmx_1_1OptionsAssigner_1_1Impl.xhtml#a292a0c6cfed7148f01a99b95d8f8d7f4',·1,·'gmx::OptionsAssigner::Impl::options_'], | ||
| 547 | ········['../classgmx_1_1SelectionOptionManager_1_1Impl.xhtml#a82e46f05bb9b7b80b013b6c614089228',·1,·'gmx::SelectionOptionManager::Impl::options_'] | ||
| 548 | ····]], | 548 | ····]], |
| 549 | ····['options_5fimpl_2eh_178',·['options_impl.h',·['../options__impl_8h.xhtml',·1,·'']]], | 549 | ····['options_5fimpl_2eh_178',·['options_impl.h',·['../options__impl_8h.xhtml',·1,·'']]], |
| 550 | ····['optionsadapter_179',·['optionsadapter',·['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter'], | 550 | ····['optionsadapter_179',·['optionsadapter',·['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter'], |
| 551 | ········['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml#a1f9a304d7b9fb1e0ecf1e1241be78a04',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter::OptionsAdapter()'] | 551 | ········['../classgmx_1_1anonymous__namespace_02pargs_8cpp_03_1_1OptionsAdapter.xhtml#a1f9a304d7b9fb1e0ecf1e1241be78a04',·1,·'gmx::anonymous_namespace{pargs.cpp}::OptionsAdapter::OptionsAdapter()'] |
| 552 | ····]], | 552 | ····]], |
| 553 | ····['optionsassigner_180',·['optionsassigner',·['../classgmx_1_1Options.xhtml#a597cdff9412b378552b0419beb08fb2f',·1,·'gmx::Options::OptionsAssigner'], | 553 | ····['optionsassigner_180',·['optionsassigner',·['../classgmx_1_1Options.xhtml#a597cdff9412b378552b0419beb08fb2f',·1,·'gmx::Options::OptionsAssigner'], |
| 554 | ········['../classgmx_1_1OptionsAssigner.xhtml',·1,·'gmx::OptionsAssigner'], | 554 | ········['../classgmx_1_1OptionsAssigner.xhtml',·1,·'gmx::OptionsAssigner'], |
| 555 | ········['../classgmx_1_1OptionsAssigner.xhtml#a1ec73dc8457bd1a10e4542b0617aac2c',·1,·'gmx::OptionsAssigner::OptionsAssigner()'] | 555 | ········['../classgmx_1_1OptionsAssigner.xhtml#a1ec73dc8457bd1a10e4542b0617aac2c',·1,·'gmx::OptionsAssigner::OptionsAssigner()'] |
| 556 | ····]], | 556 | ····]], |
| 557 | ····['optionsassigner_2ecpp_181',·['optionsassigner.cpp',·['../tests_2optionsassigner_8cpp.xhtml',·1,·'(Global·Namespace)'], | 557 | ····['optionsassigner_2ecpp_181',·['optionsassigner.cpp',·['../tests_2optionsassigner_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 558 | ········['../optionsassigner_8cpp.xhtml',·1,·'(Global·Namespace)'] | 558 | ········['../optionsassigner_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 559 | ····]], | 559 | ····]], |
| 560 | ····['optionsassigner_2eh_182',·['optionsassigner.h',·['../optionsassigner_8h.xhtml',·1,·'']]], | 560 | ····['optionsassigner_2eh_182',·['optionsassigner.h',·['../optionsassigner_8h.xhtml',·1,·'']]], |
| 561 | ····['optionsbehaviorcollection_183',·['optionsbehaviorcollection',·['../classgmx_1_1OptionsBehaviorCollection.xhtml | 561 | ····['optionsbehaviorcollection_183',·['optionsbehaviorcollection',·['../classgmx_1_1OptionsBehaviorCollection.xhtml',·1,·'gmx::OptionsBehaviorCollection'], |
| 562 | ········['../classgmx_1_1OptionsBehaviorCollection.xhtml',·1,·'gmx::OptionsBehaviorCollection'] | 562 | ········['../classgmx_1_1OptionsBehaviorCollection.xhtml#a74526a586cd629ef3cf99fea463e57f1',·1,·'gmx::OptionsBehaviorCollection::OptionsBehaviorCollection()'] |
| 563 | ····]], | 563 | ····]], |
| 564 | ····['optionsbehaviorpointer_184',·['OptionsBehaviorPointer',·['../namespacegmx.xhtml#a059233e5e29d17f821d7f56ef3faa7e4',·1,·'gmx']]], | 564 | ····['optionsbehaviorpointer_184',·['OptionsBehaviorPointer',·['../namespacegmx.xhtml#a059233e5e29d17f821d7f56ef3faa7e4',·1,·'gmx']]], |
| 565 | ····['optionsection_185',·['optionsection',·['../classgmx_1_1OptionSection.xhtml',·1,·'gmx::OptionSection'], | ||
| 565 | ···· | 566 | ········['../classgmx_1_1OptionSection.xhtml#a74841a5d684ddb79e48ced3904fc87c2',·1,·'gmx::OptionSection::OptionSection()'] |
| 566 | ········['../classgmx_1_1OptionSection.xhtml',·1,·'gmx::OptionSection'] | ||
| 567 | ····]], | 567 | ····]], |
| 568 | ····['optionsection_2eh_186',·['optionsection.h',·['../optionsection_8h.xhtml',·1,·'']]], | 568 | ····['optionsection_2eh_186',·['optionsection.h',·['../optionsection_8h.xhtml',·1,·'']]], |
| 569 | ····['optionsectionhandle_187',·['optionsectionhandle',·['../classgmx_1_1OptionSectionHandle.xhtml',·1,·'gmx::OptionSectionHandle'], | 569 | ····['optionsectionhandle_187',·['optionsectionhandle',·['../classgmx_1_1OptionSectionHandle.xhtml',·1,·'gmx::OptionSectionHandle'], |
| 570 | ········['../classgmx_1_1OptionSectionHandle.xhtml#a45e7721f3ce03848210e7ca441a14aac',·1,·'gmx::OptionSectionHandle::OptionSectionHandle()'] | 570 | ········['../classgmx_1_1OptionSectionHandle.xhtml#a45e7721f3ce03848210e7ca441a14aac',·1,·'gmx::OptionSectionHandle::OptionSectionHandle()'] |
| 571 | ····]], | 571 | ····]], |
| 572 | ····['optionsectionimpl_188',·['optionsectionimpl',·['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml',·1,·'gmx::internal::OptionSectionImpl'], | ||
| 572 | ···· | 573 | ········['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml#ad732e164448081e172643b2e192e1d68',·1,·'gmx::internal::OptionSectionImpl::OptionSectionImpl()'] |
| 573 | ········['../classgmx_1_1internal_1_1OptionSectionImpl.xhtml',·1,·'gmx::internal::OptionSectionImpl'] | ||
| 574 | ····]], | 574 | ····]], |
| 575 | ····['optionsfilter_189',·['optionsfilter',·['../classgmx_1_1anonymous__namespace_02cmdlinehelpwriter_8cpp_03_1_1OptionsFilter.xhtml#aacaefce8572e2ffc40493686194daf32',·1,·'gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFilter::OptionsFilter()'], | 575 | ····['optionsfilter_189',·['optionsfilter',·['../classgmx_1_1anonymous__namespace_02cmdlinehelpwriter_8cpp_03_1_1OptionsFilter.xhtml#aacaefce8572e2ffc40493686194daf32',·1,·'gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFilter::OptionsFilter()'], |
| 576 | ········['../classgmx_1_1anonymous__namespace_02cmdlinehelpwriter_8cpp_03_1_1OptionsFilter.xhtml',·1,·'gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFilter'] | 576 | ········['../classgmx_1_1anonymous__namespace_02cmdlinehelpwriter_8cpp_03_1_1OptionsFilter.xhtml',·1,·'gmx::anonymous_namespace{cmdlinehelpwriter.cpp}::OptionsFilter'] |
| 577 | ····]], | 577 | ····]], |
| 578 | ····['optionsfinished_190',·['optionsfinished',·['../classgmx_1_1TimeUnitBehavior.xhtml#a39dbf3ae0c6cd27e41260525cdc81934',·1,·'gmx::TimeUnitBehavior::optionsFinished()'], | 578 | ····['optionsfinished_190',·['optionsfinished',·['../classgmx_1_1TimeUnitBehavior.xhtml#a39dbf3ae0c6cd27e41260525cdc81934',·1,·'gmx::TimeUnitBehavior::optionsFinished()'], |
| 579 | ········['../classgmx_1_1TrajectoryAnalysisModule.xhtml#afa3457cc922f1d16c4c19cec740e0442',·1,·'gmx::TrajectoryAnalysisModule::optionsFinished()'], | ||
| 580 | ········['../classgmx_1_1SelectionOptionBehavior.xhtml#ac18e2436bac7d70a0a973166150b3683',·1,·'gmx::SelectionOptionBehavior::optionsFinished()'], | 579 | ········['../classgmx_1_1SelectionOptionBehavior.xhtml#ac18e2436bac7d70a0a973166150b3683',·1,·'gmx::SelectionOptionBehavior::optionsFinished()'], |
| 580 | ········['../classgmx_1_1TrajectoryAnalysisModule.xhtml#afa3457cc922f1d16c4c19cec740e0442',·1,·'gmx::TrajectoryAnalysisModule::optionsFinished()'], | ||
| 581 | ········['../classgmx_1_1IOptionsBehavior.xhtml#a0e51c68861417e488fcb2a61b425887a',·1,·'gmx::IOptionsBehavior::optionsFinished()'], | 581 | ········['../classgmx_1_1IOptionsBehavior.xhtml#a0e51c68861417e488fcb2a61b425887a',·1,·'gmx::IOptionsBehavior::optionsFinished()'], |
| 582 | ········['../classgmx_1_1TrajectoryAnalysisRunnerCommon.xhtml#a03b3e6895e314ca7ea90359ed0a3fedd',·1,·'gmx::TrajectoryAnalysisRunnerCommon::optionsFinished()'], | 582 | ········['../classgmx_1_1TrajectoryAnalysisRunnerCommon.xhtml#a03b3e6895e314ca7ea90359ed0a3fedd',·1,·'gmx::TrajectoryAnalysisRunnerCommon::optionsFinished()'], |
| 583 | ········['../group__module__trajectoryanalysis.xhtml#gad6e3bdf7096e4c88b9ff8cf4e1ad9739',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf::optionsFinished()'], | 583 | ········['../group__module__trajectoryanalysis.xhtml#gad6e3bdf7096e4c88b9ff8cf4e1ad9739',·1,·'gmx::analysismodules::anonymous_namespace{rdf.cpp}::Rdf::optionsFinished()'], |
| 584 | ········['../classgmx_1_1OptionsBehaviorCollection.xhtml#a96e859a1f8ceb6bd4c430944a4f3faaa',·1,·'gmx::OptionsBehaviorCollection::optionsFinished()'], | 584 | ········['../classgmx_1_1OptionsBehaviorCollection.xhtml#a96e859a1f8ceb6bd4c430944a4f3faaa',·1,·'gmx::OptionsBehaviorCollection::optionsFinished()'], |
| 585 | ········['../classgmx_1_1ICommandLineOptionsModule.xhtml#ace80320e3379cc01c79e52c2a51e4e56',·1,·'gmx::ICommandLineOptionsModule::optionsFinished()'], | 585 | ········['../classgmx_1_1ICommandLineOptionsModule.xhtml#ace80320e3379cc01c79e52c2a51e4e56',·1,·'gmx::ICommandLineOptionsModule::optionsFinished()'], |
| 586 | ········['../classgmx_1_1analysismodules_1_1Msd.xhtml#a0b40f3faf4d88711bbabac660aa3f597',·1,·'gmx::analysismodules::Msd::optionsFinished()'] | 586 | ········['../classgmx_1_1analysismodules_1_1Msd.xhtml#a0b40f3faf4d88711bbabac660aa3f597',·1,·'gmx::analysismodules::Msd::optionsFinished()'] |
| 587 | ····]], | 587 | ····]], |
| Offset 2, 42 lines modified | Offset 2, 42 lines modified | ||
| 2 | ····['p_0',·['p',·['../structgmx__ana__poscalc__t.xhtml#af8e621e3296236f51d768438758b7cfe',·1,·'gmx_ana_poscalc_t::p'], | 2 | ····['p_0',·['p',·['../structgmx__ana__poscalc__t.xhtml#af8e621e3296236f51d768438758b7cfe',·1,·'gmx_ana_poscalc_t::p'], |
| 3 | ········['../structgmx__ana__selvalue__t.xhtml#a5ac7ec54e9c4bd24a4e1c525eb8ab996',·1,·'gmx_ana_selvalue_t::p'], | 3 | ········['../structgmx__ana__selvalue__t.xhtml#a5ac7ec54e9c4bd24a4e1c525eb8ab996',·1,·'gmx_ana_selvalue_t::p'], |
| 4 | ········['../structt__methoddata__distance.xhtml#a4e60cc193bb2b70b0a199f573006cc2f',·1,·'t_methoddata_distance::p'], | 4 | ········['../structt__methoddata__distance.xhtml#a4e60cc193bb2b70b0a199f573006cc2f',·1,·'t_methoddata_distance::p'], |
| 5 | ········['../structpartition.xhtml#ae07c240cf01bfd862cd8233bb978e308',·1,·'partition::p'], | 5 | ········['../structpartition.xhtml#ae07c240cf01bfd862cd8233bb978e308',·1,·'partition::p'], |
| 6 | ········['../structt__methoddata__kweval.xhtml#a4652f5688fe92e8903f34b55572b6dd6',·1,·'t_methoddata_kweval::p'], | 6 | ········['../structt__methoddata__kweval.xhtml#a4652f5688fe92e8903f34b55572b6dd6',·1,·'t_methoddata_kweval::p'], |
| 7 | ········['../structmethoddata__permute.xhtml#ab2ba3a38c146ec2ddf26bbade9938bdb',·1,·'methoddata_permute::p'] | 7 | ········['../structmethoddata__permute.xhtml#ab2ba3a38c146ec2ddf26bbade9938bdb',·1,·'methoddata_permute::p'] |
| 8 | ····]], | 8 | ····]], |
| 9 | ····['p1_1',·['p1',·['../structmethoddata__merge.xhtml#a4cfa6a26abef34e7898cb95313808995',·1,·'methoddata_merge::p1'], | ||
| 10 | ····· | 9 | ····['p1_1',·['p1',·['../namespacegmx.xhtml#a6e4ce54343e36af1edaf514bd298959fa5f2b9323c39ee3c861a7b382d205c3d3',·1,·'gmx::P1'], |
| 10 | ········['../structmethoddata__merge.xhtml#a4cfa6a26abef34e7898cb95313808995',·1,·'methoddata_merge::p1'] | ||
| 11 | ····]], | 11 | ····]], |
| 12 | ····['p2_2',·['p2',·['../structmethoddata__merge.xhtml#a3b289de286d8a69f4d02910c3a246460',·1,·'methoddata_merge']]], | 12 | ····['p2_2',·['p2',·['../structmethoddata__merge.xhtml#a3b289de286d8a69f4d02910c3a246460',·1,·'methoddata_merge']]], |
| 13 | ····['package_3',·['Package',·['../structgmx_1_1HardwareTopology_1_1Package.xhtml',·1,·'gmx::HardwareTopology']]], | 13 | ····['package_3',·['Package',·['../structgmx_1_1HardwareTopology_1_1Package.xhtml',·1,·'gmx::HardwareTopology']]], |
| 14 | ····['packageidinmachine_4',·['packageIdInMachine',·['../structgmx_1_1CpuInfo_1_1LogicalProcessor.xhtml#a4f9fa92734944301901b1dcd85093254',·1,·'gmx::CpuInfo::LogicalProcessor']]], | 14 | ····['packageidinmachine_4',·['packageIdInMachine',·['../structgmx_1_1CpuInfo_1_1LogicalProcessor.xhtml#a4f9fa92734944301901b1dcd85093254',·1,·'gmx::CpuInfo::LogicalProcessor']]], |
| 15 | ····['packagerankintopology_5',·['packageRankInTopology',·['../structgmx_1_1HardwareTopology_1_1LogicalProcessor.xhtml#a1b9ad69ea5aa8aca7f5595c889df2e7c',·1,·'gmx::HardwareTopology::LogicalProcessor']]], | 15 | ····['packagerankintopology_5',·['packageRankInTopology',·['../structgmx_1_1HardwareTopology_1_1LogicalProcessor.xhtml#a1b9ad69ea5aa8aca7f5595c889df2e7c',·1,·'gmx::HardwareTopology::LogicalProcessor']]], |
| 16 | ····['packages_6',·['packages',·['../structgmx_1_1HardwareTopology_1_1Machine.xhtml#a74871628a052ed8f5cb82d2d53cd7c97',·1,·'gmx::HardwareTopology::Machine']]], | 16 | ····['packages_6',·['packages',·['../structgmx_1_1HardwareTopology_1_1Machine.xhtml#a74871628a052ed8f5cb82d2d53cd7c97',·1,·'gmx::HardwareTopology::Machine']]], |
| 17 | ····['packed_20j_20clusters_20of_20warps_7',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]], | 17 | ····['packed_20j_20clusters_20of_20warps_7',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]], |
| 18 | ····['packedboundingboxes_8',·['packedBoundingBoxes',·['../classNbnxm_1_1Grid.xhtml#a353b04469531e9ab020abdd48aa0e351',·1,·'Nbnxm::Grid']]], | 18 | ····['packedboundingboxes_8',·['packedBoundingBoxes',·['../classNbnxm_1_1Grid.xhtml#a353b04469531e9ab020abdd48aa0e351',·1,·'Nbnxm::Grid']]], |
| 19 | ····['packedjclusterlist_9',·['PackedJClusterList',·['../classPackedJClusterList.xhtml',·1,·'']]], | 19 | ····['packedjclusterlist_9',·['PackedJClusterList',·['../classPackedJClusterList.xhtml',·1,·'']]], |
| 20 | ····['packhaloexternal_10',·['PackHaloExternal',·['../classPackHaloExternal.xhtml',·1,·'']]], | 20 | ····['packhaloexternal_10',·['PackHaloExternal',·['../classPackHaloExternal.xhtml',·1,·'']]], |
| 21 | ····['packhalointernal_11',·['PackHaloInternal',·['../classPackHaloInternal.xhtml',·1,·'']]], | 21 | ····['packhalointernal_11',·['PackHaloInternal',·['../classPackHaloInternal.xhtml',·1,·'']]], |
| 22 | ····['paddedarrayref_12',·['paddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#af96cdc4e2ae79fc9e3de0a7ac3291b1f',·1,·'gmx::ArrayRefWithPadding']]], | 22 | ····['paddedarrayref_12',·['paddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#af96cdc4e2ae79fc9e3de0a7ac3291b1f',·1,·'gmx::ArrayRefWithPadding']]], |
| 23 | ····['paddedconstarrayref_13',·['paddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a3b87c53ddcde85eccd59b62fafc2fec3',·1,·'gmx::ArrayRefWithPadding']]], | 23 | ····['paddedconstarrayref_13',·['paddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a3b87c53ddcde85eccd59b62fafc2fec3',·1,·'gmx::ArrayRefWithPadding']]], |
| 24 | ····['paddedhostvector_14',·['paddedhostvector',·['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'], | ||
| 25 | ····· | 24 | ····['paddedhostvector_14',·['paddedhostvector',·['../state_8h.xhtml#ac8c51716c19f5f58463e856c19b39acb',·1,·'PaddedHostVector: state.h'], |
| 25 | ········['../namespacegmx.xhtml#a5ec47a61b30ffcc249cc27ae5ea47da8',·1,·'gmx::PaddedHostVector'] | ||
| 26 | ····]], | 26 | ····]], |
| 27 | ····['paddednumatomsincolumn_15',·['paddedNumAtomsInColumn',·['../classNbnxm_1_1Grid.xhtml#a95f443a30f4a01b8cb23197a95e51443',·1,·'Nbnxm::Grid']]], | 27 | ····['paddednumatomsincolumn_15',·['paddedNumAtomsInColumn',·['../classNbnxm_1_1Grid.xhtml#a95f443a30f4a01b8cb23197a95e51443',·1,·'Nbnxm::Grid']]], |
| 28 | ····['paddedsize_16',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]], | 28 | ····['paddedsize_16',·['paddedSize',·['../classgmx_1_1PaddedVector.xhtml#aa3d1b552af6106d1bb61426b4605add3',·1,·'gmx::PaddedVector']]], |
| 29 | ····['paddedvector_17',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list<·value_type·>·const·&il)'], | ||
| 30 | ····· | 29 | ····['paddedvector_17',·['paddedvector',·['../classgmx_1_1PaddedVector.xhtml#ae8d292225db685d912d5be8f26d32d2d',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·const·allocator_type·&allocator=Allocator())'], |
| 31 | ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector<·T,·Allocator·>'], | ||
| 32 | ········['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&v,·const·allocator_type·&allocator=Allocator())'], | 30 | ········['../classgmx_1_1PaddedVector.xhtml#ac090f26229cc0e5ca4cf4f70d500dd9e',·1,·'gmx::PaddedVector::PaddedVector(size_type·count,·value_type·const·&v,·const·allocator_type·&allocator=Allocator())'], |
| 33 | ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&allocator)'], | 31 | ········['../classgmx_1_1PaddedVector.xhtml#a8a5f5975b2207677f1e956060b02c1d2',·1,·'gmx::PaddedVector::PaddedVector(allocator_type·const·&allocator)'], |
| 32 | ········['../classgmx_1_1PaddedVector.xhtml#aae517037a7e2a04806a72deffe661437',·1,·'gmx::PaddedVector::PaddedVector(std::initializer_list<·value_type·>·const·&il)'], | ||
| 34 | ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&o)'], | 33 | ········['../classgmx_1_1PaddedVector.xhtml#a1455b09f0cb0dd2b5f6ff5b092ecea08',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·const·&o)'], |
| 35 | ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&&o)·noexcept'], | 34 | ········['../classgmx_1_1PaddedVector.xhtml#a99f036b6e7ea821ab24604474748c8f6',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&&o)·noexcept'], |
| 36 | ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&&o,·const·Allocator·&alloc)·noexcept'] | 35 | ········['../classgmx_1_1PaddedVector.xhtml#af634e58ae15af112df64a6e9f42a5460',·1,·'gmx::PaddedVector::PaddedVector(PaddedVector·&&o,·const·Allocator·&alloc)·noexcept'], |
| 36 | ········['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx::PaddedVector<·T,·Allocator·>'] | ||
| 37 | ····]], | 37 | ····]], |
| 38 | ····['paddedvector_2ecpp_18',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]], | 38 | ····['paddedvector_2ecpp_18',·['paddedvector.cpp',·['../paddedvector_8cpp.xhtml',·1,·'']]], |
| 39 | ····['paddedvector_2eh_19',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]], | 39 | ····['paddedvector_2eh_19',·['paddedvector.h',·['../paddedvector_8h.xhtml',·1,·'']]], |
| 40 | ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_20',·['PaddedVector<·gmx::BasicVector·>',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]], | 40 | ····['paddedvector_3c_20gmx_3a_3abasicvector_20_3e_20',·['PaddedVector<·gmx::BasicVector·>',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]], |
| 41 | ····['paddedvector_3c_20real_20_3e_21',·['PaddedVector<·real·>',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]], | 41 | ····['paddedvector_3c_20real_20_3e_21',·['PaddedVector<·real·>',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]], |
| 42 | ····['paddedvector_3c_20rvec_20_3e_22',·['PaddedVector<·RVec·>',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]], | 42 | ····['paddedvector_3c_20rvec_20_3e_22',·['PaddedVector<·RVec·>',·['../classgmx_1_1PaddedVector.xhtml',·1,·'gmx']]], |
| 43 | ····['paddedvectortest_23',·['PaddedVectorTest',·['../classgmx_1_1test_1_1PaddedVectorTest.xhtml',·1,·'gmx::test']]], | 43 | ····['paddedvectortest_23',·['PaddedVectorTest',·['../classgmx_1_1test_1_1PaddedVectorTest.xhtml',·1,·'gmx::test']]], |
| Offset 24, 16 lines modified | Offset 24, 16 lines modified | ||
| 24 | ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]], | 24 | ····['qmmm_2eh_14',·['qmmm.h',·['../qmmm_8h.xhtml',·1,·'']]], |
| 25 | ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]], | 25 | ····['qmmmforceprovider_15',·['QMMMForceProvider',·['../classgmx_1_1QMMMForceProvider.xhtml',·1,·'gmx']]], |
| 26 | ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'], | 26 | ····['qmmmforceprovider_2ecpp_16',·['qmmmforceprovider.cpp',·['../tests_2qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 27 | ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'] | 27 | ········['../qmmmforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 28 | ····]], | 28 | ····]], |
| 29 | ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]], | 29 | ····['qmmmforceprovider_2eh_17',·['qmmmforceprovider.h',·['../qmmmforceprovider_8h.xhtml',·1,·'']]], |
| 30 | ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]], | 30 | ····['qmmmforceprovider_5fstub_2ecpp_18',·['qmmmforceprovider_stub.cpp',·['../qmmmforceprovider__stub_8cpp.xhtml',·1,·'']]], |
| 31 | ····['qmmminputgenerator_19',·['qmmminputgenerator',·['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator'], | ||
| 31 | ···· | 32 | ········['../classgmx_1_1QMMMInputGenerator.xhtml#aa0847e6ee608ea7444b36c9db6e0bdd6',·1,·'gmx::QMMMInputGenerator::QMMMInputGenerator()'] |
| 32 | ········['../classgmx_1_1QMMMInputGenerator.xhtml',·1,·'gmx::QMMMInputGenerator'] | ||
| 33 | ····]], | 33 | ····]], |
| 34 | ····['qmmminputgenerator_2ecpp_20',·['qmmminputgenerator.cpp',·['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'], | 34 | ····['qmmminputgenerator_2ecpp_20',·['qmmminputgenerator.cpp',·['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 35 | ········['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'] | 35 | ········['../qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 36 | ····]], | 36 | ····]], |
| 37 | ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]], | 37 | ····['qmmminputgenerator_2eh_21',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]], |
| 38 | ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]], | 38 | ····['qmmmmdptransformfromstring_22',·['QMMMMdpTransformFromString',·['../namespacegmx_1_1anonymous__namespace_02qmmmoptions_8cpp_03.xhtml#a704afcf71de3ae29cf3c3a260c8e8e0c',·1,·'gmx::anonymous_namespace{qmmmoptions.cpp}']]], |
| 39 | ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]], | 39 | ····['qmmmmoduleinfo_23',·['QMMMModuleInfo',·['../structgmx_1_1QMMMModuleInfo.xhtml',·1,·'gmx']]], |
| Offset 413, 37 lines modified | Offset 413, 37 lines modified | ||
| 413 | ····['selections_20selection_262',·['Parsing·and·Evaluation·of·Analysis·Selections·(selection)',·['../group__module__selection.xhtml',·1,·'']]], | 413 | ····['selections_20selection_262',·['Parsing·and·Evaluation·of·Analysis·Selections·(selection)',·['../group__module__selection.xhtml',·1,·'']]], |
| 414 | ····['selections_5f_263',·['selections_',·['../classgmx_1_1TrajectoryAnalysisModuleData_1_1Impl.xhtml#af3968be6c04b57f731909d51b2244441',·1,·'gmx::TrajectoryAnalysisModuleData::Impl']]], | 414 | ····['selections_5f_263',·['selections_',·['../classgmx_1_1TrajectoryAnalysisModuleData_1_1Impl.xhtml#af3968be6c04b57f731909d51b2244441',·1,·'gmx::TrajectoryAnalysisModuleData::Impl']]], |
| 415 | ····['selectionstringmatchtype_264',·['SelectionStringMatchType',·['../group__module__selection.xhtml#ga2ab58eea84794341a35ac67e9b2dd229',·1,·'gmx']]], | 415 | ····['selectionstringmatchtype_264',·['SelectionStringMatchType',·['../group__module__selection.xhtml#ga2ab58eea84794341a35ac67e9b2dd229',·1,·'gmx']]], |
| 416 | ····['selectiontext_265',·['selectiontext',·['../classgmx_1_1internal_1_1SelectionData.xhtml#a4f2c61f76602dd1dcfb45e9258191279',·1,·'gmx::internal::SelectionData::selectionText()'], | 416 | ····['selectiontext_265',·['selectiontext',·['../classgmx_1_1internal_1_1SelectionData.xhtml#a4f2c61f76602dd1dcfb45e9258191279',·1,·'gmx::internal::SelectionData::selectionText()'], |
| 417 | ········['../classgmx_1_1Selection.xhtml#a710edcc0520d725ae7e90a5030427698',·1,·'gmx::Selection::selectionText()'] | 417 | ········['../classgmx_1_1Selection.xhtml#a710edcc0520d725ae7e90a5030427698',·1,·'gmx::Selection::selectionText()'] |
| 418 | ····]], | 418 | ····]], |
| 419 | ····['selectiontopologyproperties_266',·['selectiontopologyproperties',·['../structgmx_1_1SelectionTopologyProperties.xhtml',·1,·'gmx::SelectionTopologyProperties'], | 419 | ····['selectiontopologyproperties_266',·['selectiontopologyproperties',·['../structgmx_1_1SelectionTopologyProperties.xhtml',·1,·'gmx::SelectionTopologyProperties'], |
| 420 | ········['../structgmx_1_1SelectionTopologyProperties.xhtml#af834c076cd9cbc2c57b89250727bfbe3',·1,·'gmx::SelectionTopologyProperties::SelectionTopologyProperties()'], | ||
| 421 | ········['../structgmx_1_1SelectionTopologyProperties.xhtml#a14d9462c691bb3660355f479b50c6498',·1,·'gmx::SelectionTopologyProperties::SelectionTopologyProperties(bool·needsTopology,·bool·needsMasses)'] | 420 | ········['../structgmx_1_1SelectionTopologyProperties.xhtml#a14d9462c691bb3660355f479b50c6498',·1,·'gmx::SelectionTopologyProperties::SelectionTopologyProperties(bool·needsTopology,·bool·needsMasses)'], |
| 421 | ········['../structgmx_1_1SelectionTopologyProperties.xhtml#af834c076cd9cbc2c57b89250727bfbe3',·1,·'gmx::SelectionTopologyProperties::SelectionTopologyProperties()'] | ||
| 422 | ····]], | 422 | ····]], |
| 423 | ····['selectiontreeelement_267',·['selectiontreeelement',·['../classgmx_1_1SelectionTreeElement.xhtml#a23c50625ee174eb9b7cd96cf292c0a97',·1,·'gmx::SelectionTreeElement::SelectionTreeElement()'], | 423 | ····['selectiontreeelement_267',·['selectiontreeelement',·['../classgmx_1_1SelectionTreeElement.xhtml#a23c50625ee174eb9b7cd96cf292c0a97',·1,·'gmx::SelectionTreeElement::SelectionTreeElement()'], |
| 424 | ········['../classgmx_1_1SelectionTreeElement.xhtml',·1,·'gmx::SelectionTreeElement'] | 424 | ········['../classgmx_1_1SelectionTreeElement.xhtml',·1,·'gmx::SelectionTreeElement'] |
| 425 | ····]], | 425 | ····]], |
| 426 | ····['selectiontreeelementpointer_268',·['SelectionTreeElementPointer',·['../namespacegmx.xhtml#a2804c9c82f2a9bd0ec94d3c2f1003f42',·1,·'gmx']]], | 426 | ····['selectiontreeelementpointer_268',·['SelectionTreeElementPointer',·['../namespacegmx.xhtml#a2804c9c82f2a9bd0ec94d3c2f1003f42',·1,·'gmx']]], |
| 427 | ····['selectiontypeoption_269',·['SelectionTypeOption',·['../classgmx_1_1SelectionCollection.xhtml#af294f433688c52289ed05459d453dc34',·1,·'gmx::SelectionCollection']]], | 427 | ····['selectiontypeoption_269',·['SelectionTypeOption',·['../classgmx_1_1SelectionCollection.xhtml#af294f433688c52289ed05459d453dc34',·1,·'gmx::SelectionCollection']]], |
| 428 | ····['selectmoduletest_270',·['SelectModuleTest',·['../namespaceanonymous__namespace_02select_8cpp_03.xhtml#a09ac3d90cb8f628ef8bcfb584a8ab2d6',·1,·'anonymous_namespace{select.cpp}']]], | 428 | ····['selectmoduletest_270',·['SelectModuleTest',·['../namespaceanonymous__namespace_02select_8cpp_03.xhtml#a09ac3d90cb8f628ef8bcfb584a8ab2d6',·1,·'anonymous_namespace{select.cpp}']]], |
| 429 | ····['selectprunekernel_271',·['selectPruneKernel',·['../namespaceNbnxm.xhtml#a13759301368d62d361ad2e543cb68fff',·1,·'Nbnxm']]], | 429 | ····['selectprunekernel_271',·['selectPruneKernel',·['../namespaceNbnxm.xhtml#a13759301368d62d361ad2e543cb68fff',·1,·'Nbnxm']]], |
| 430 | ····['selectsinglefromarray_272',·['selectSingleFromArray',·['../classgmx_1_1AnalysisNeighborhoodPositions.xhtml#ab7bfbb8eba303c38bff880fc78688e93',·1,·'gmx::AnalysisNeighborhoodPositions']]], | 430 | ····['selectsinglefromarray_272',·['selectSingleFromArray',·['../classgmx_1_1AnalysisNeighborhoodPositions.xhtml#ab7bfbb8eba303c38bff880fc78688e93',·1,·'gmx::AnalysisNeighborhoodPositions']]], |
| 431 | ····['selectsplineandspreadkernelptr_273',·['selectSplineAndSpreadKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#aecfebe55042dd51c6c0a96a2c89b0f57',·1,·'pme_gpu_internal.cpp']]], | 431 | ····['selectsplineandspreadkernelptr_273',·['selectSplineAndSpreadKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#aecfebe55042dd51c6c0a96a2c89b0f57',·1,·'pme_gpu_internal.cpp']]], |
| 432 | ····['selectsplinekernelptr_274',·['selectSplineKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#abf494874acbbf5b70e1e33e008698fc1',·1,·'pme_gpu_internal.cpp']]], | 432 | ····['selectsplinekernelptr_274',·['selectSplineKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#abf494874acbbf5b70e1e33e008698fc1',·1,·'pme_gpu_internal.cpp']]], |
| 433 | ····['selectspreadkernelptr_275',·['selectSpreadKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#a8eeee450b2b1ed42c53912d7975eee9b',·1,·'pme_gpu_internal.cpp']]], | 433 | ····['selectspreadkernelptr_275',·['selectSpreadKernelPtr',·['../pme__gpu__internal_8cpp.xhtml#a8eeee450b2b1ed42c53912d7975eee9b',·1,·'pme_gpu_internal.cpp']]], |
| 434 | ····['selelem_2ecpp_276',·['selelem.cpp',·['../selelem_8cpp.xhtml',·1,·'']]], | 434 | ····['selelem_2ecpp_276',·['selelem.cpp',·['../selelem_8cpp.xhtml',·1,·'']]], |
| 435 | ····['selelem_2eh_277',·['selelem.h',·['../selelem_8h.xhtml',·1,·'']]], | 435 | ····['selelem_2eh_277',·['selelem.h',·['../selelem_8h.xhtml',·1,·'']]], |
| 436 | ····['selelemtemporaryvalueassigner_278',·['selelemtemporaryvalueassigner',·['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml | 436 | ····['selelemtemporaryvalueassigner_278',·['selelemtemporaryvalueassigner',·['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner'], |
| 437 | ········['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml#a154fddb09ea04bbdd3e59f4823bfd920',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner::SelelemTemporaryValueAssigner(const·SelectionTreeElementPointer·&sel,·const·SelectionTreeElement·&vsource)'], | 437 | ········['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml#a154fddb09ea04bbdd3e59f4823bfd920',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner::SelelemTemporaryValueAssigner(const·SelectionTreeElementPointer·&sel,·const·SelectionTreeElement·&vsource)'], |
| 438 | ········['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner'] | 438 | ········['../classanonymous__namespace_02evaluate_8cpp_03_1_1SelelemTemporaryValueAssigner.xhtml#af0c114152bd2b93303b710e4f8d07cf3',·1,·'anonymous_namespace{evaluate.cpp}::SelelemTemporaryValueAssigner::SelelemTemporaryValueAssigner()'] |
| 439 | ····]], | 439 | ····]], |
| 440 | ····['selfenergy_279',·['selfenergy',·['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1Ewald | 440 | ····['selfenergy_279',·['selfenergy',·['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldAnalytical_01_4.xhtml#adaa753e42803ea6c0c25f9927fe291d8',·1,·'gmx::CoulombCalculator<·KernelCoulombType::EwaldAnalytical·>::selfEnergy()'], |
| 441 | ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1RF_01_4.xhtml#a83bb16148e1beec93fb1f70e4cfa7485',·1,·'gmx::CoulombCalculator<·KernelCoulombType::RF·>::selfEnergy()'], | 441 | ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1RF_01_4.xhtml#a83bb16148e1beec93fb1f70e4cfa7485',·1,·'gmx::CoulombCalculator<·KernelCoulombType::RF·>::selfEnergy()'], |
| 442 | ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1Ewald | 442 | ········['../classgmx_1_1CoulombCalculator_3_01KernelCoulombType_1_1EwaldTabulated_01_4.xhtml#aad40b56c23fdb67151a395bf70a58b78',·1,·'gmx::CoulombCalculator<·KernelCoulombType::EwaldTabulated·>::selfEnergy()'] |
| 443 | ····]], | 443 | ····]], |
| 444 | ····['selhelp_2ecpp_280',·['selhelp.cpp',·['../selhelp_8cpp.xhtml',·1,·'']]], | 444 | ····['selhelp_2ecpp_280',·['selhelp.cpp',·['../selhelp_8cpp.xhtml',·1,·'']]], |
| 445 | ····['selhelp_2eh_281',·['selhelp.h',·['../selhelp_8h.xhtml',·1,·'']]], | 445 | ····['selhelp_2eh_281',·['selhelp.h',·['../selhelp_8h.xhtml',·1,·'']]], |
| 446 | ····['selmethod_2ecpp_282',·['selmethod.cpp',·['../selmethod_8cpp.xhtml',·1,·'']]], | 446 | ····['selmethod_2ecpp_282',·['selmethod.cpp',·['../selmethod_8cpp.xhtml',·1,·'']]], |
| 447 | ····['selmethod_2eh_283',·['selmethod.h',·['../selmethod_8h.xhtml',·1,·'']]], | 447 | ····['selmethod_2eh_283',·['selmethod.h',·['../selmethod_8h.xhtml',·1,·'']]], |
| 448 | ····['selmethodevalcontext_284',·['selmethodevalcontext',·['../structgmx_1_1SelMethodEvalContext.xhtml#af7866c2274dc36311bff15ad41a9d66c',·1,·'gmx::SelMethodEvalContext::SelMethodEvalContext()'], | 448 | ····['selmethodevalcontext_284',·['selmethodevalcontext',·['../structgmx_1_1SelMethodEvalContext.xhtml#af7866c2274dc36311bff15ad41a9d66c',·1,·'gmx::SelMethodEvalContext::SelMethodEvalContext()'], |
| 449 | ········['../structgmx_1_1SelMethodEvalContext.xhtml',·1,·'gmx::SelMethodEvalContext'] | 449 | ········['../structgmx_1_1SelMethodEvalContext.xhtml',·1,·'gmx::SelMethodEvalContext'] |
| Offset 427, 16 lines modified | Offset 427, 16 lines modified | ||
| 427 | ····]], | 427 | ····]], |
| 428 | ····['timeunitasstring_268',·['timeUnitAsString',·['../classgmx_1_1TimeUnitManager.xhtml#a4f9fcf6d46d7b2d9d534f083b301c8ae',·1,·'gmx::TimeUnitManager']]], | 428 | ····['timeunitasstring_268',·['timeUnitAsString',·['../classgmx_1_1TimeUnitManager.xhtml#a4f9fcf6d46d7b2d9d534f083b301c8ae',·1,·'gmx::TimeUnitManager']]], |
| 429 | ····['timeunitbehavior_269',·['TimeUnitBehavior',·['../classgmx_1_1TimeUnitBehavior.xhtml',·1,·'gmx']]], | 429 | ····['timeunitbehavior_269',·['TimeUnitBehavior',·['../classgmx_1_1TimeUnitBehavior.xhtml',·1,·'gmx']]], |
| 430 | ····['timeunitmanager_270',·['timeunitmanager',·['../classgmx_1_1TimeUnitManager.xhtml#ac1f08cab7f0f68500ffe6cbe94695164',·1,·'gmx::TimeUnitManager::TimeUnitManager(TimeUnit·unit)'], | 430 | ····['timeunitmanager_270',·['timeunitmanager',·['../classgmx_1_1TimeUnitManager.xhtml#ac1f08cab7f0f68500ffe6cbe94695164',·1,·'gmx::TimeUnitManager::TimeUnitManager(TimeUnit·unit)'], |
| 431 | ········['../classgmx_1_1TimeUnitManager.xhtml#a726dac3a92cf59e002165ba0db37f5d2',·1,·'gmx::TimeUnitManager::TimeUnitManager()'], | 431 | ········['../classgmx_1_1TimeUnitManager.xhtml#a726dac3a92cf59e002165ba0db37f5d2',·1,·'gmx::TimeUnitManager::TimeUnitManager()'], |
| 432 | ········['../classgmx_1_1TimeUnitManager.xhtml',·1,·'gmx::TimeUnitManager'] | 432 | ········['../classgmx_1_1TimeUnitManager.xhtml',·1,·'gmx::TimeUnitManager'] |
| 433 | ····]], | 433 | ····]], |
| 434 | ····['timeunitmanager_2ecpp_271',·['timeunitmanager.cpp',·['../timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)'], | 434 | ····['timeunitmanager_2ecpp_271',·['timeunitmanager.cpp',·['../tests_2timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 435 | ········['../t | 435 | ········['../timeunitmanager_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 436 | ····]], | 436 | ····]], |
| 437 | ····['timeunitmanager_2eh_272',·['timeunitmanager.h',·['../timeunitmanager_8h.xhtml',·1,·'']]], | 437 | ····['timeunitmanager_2eh_272',·['timeunitmanager.h',·['../timeunitmanager_8h.xhtml',·1,·'']]], |
| 438 | ····['timevalue_273',·['timevalue',·['../classgmx_1_1DoubleOption.xhtml#a430a6a0b3b7752ad235843e7da58b653',·1,·'gmx::DoubleOption::timeValue()'], | 438 | ····['timevalue_273',·['timevalue',·['../classgmx_1_1DoubleOption.xhtml#a430a6a0b3b7752ad235843e7da58b653',·1,·'gmx::DoubleOption::timeValue()'], |
| 439 | ········['../classgmx_1_1FloatOption.xhtml#a1e9cd8943aa71dfc4ab26b4465b8f7c3',·1,·'gmx::FloatOption::timeValue()'] | 439 | ········['../classgmx_1_1FloatOption.xhtml#a1e9cd8943aa71dfc4ab26b4465b8f7c3',·1,·'gmx::FloatOption::timeValue()'] |
| 440 | ····]], | 440 | ····]], |
| 441 | ····['timing_274',·['timing',·['../structgmx__wallclock__gpu__pme__t.xhtml#a607e29d4505f8c0bfafdd16acc013695',·1,·'gmx_wallclock_gpu_pme_t']]], | 441 | ····['timing_274',·['timing',·['../structgmx__wallclock__gpu__pme__t.xhtml#a607e29d4505f8c0bfafdd16acc013695',·1,·'gmx_wallclock_gpu_pme_t']]], |
| 442 | ····['timing_2ecpp_275',·['timing.cpp',·['../timing_8cpp.xhtml',·1,·'']]], | 442 | ····['timing_2ecpp_275',·['timing.cpp',·['../timing_8cpp.xhtml',·1,·'']]], |
| Offset 31, 41 lines modified | Offset 31, 41 lines modified | ||
| 31 | ····['unionfind_2eh_17',·['unionfind.h',·['../unionfind_8h.xhtml',·1,·'']]], | 31 | ····['unionfind_2eh_17',·['unionfind.h',·['../unionfind_8h.xhtml',·1,·'']]], |
| 32 | ····['unionfinder_18',·['UnionFinder',·['../classgmx_1_1UnionFinder.xhtml',·1,·'gmx']]], | 32 | ····['unionfinder_18',·['UnionFinder',·['../classgmx_1_1UnionFinder.xhtml',·1,·'gmx']]], |
| 33 | ····['unique_5fcptr_19',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]], | 33 | ····['unique_5fcptr_19',·['unique_cptr',·['../namespacegmx.xhtml#a89d1da25b1e1f9331f1fe99b15072eac',·1,·'gmx']]], |
| 34 | ····['unique_5fcptr_2eh_20',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]], | 34 | ····['unique_5fcptr_2eh_20',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]], |
| 35 | ····['unit_21',·['unit',·['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit'], | 35 | ····['unit_21',·['unit',·['../structUmbrellaOptions.xhtml#ae5d2dca38270c084eb3386aa26b9b959',·1,·'UmbrellaOptions::unit'], |
| 36 | ········['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()'] | 36 | ········['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm::unit()'] |
| 37 | ····]], | 37 | ····]], |
| 38 | ····['unitcellinfo_22',·['unitcellinfo',·['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo'], | ||
| 38 | ···· | 39 | ········['../structUnitCellInfo.xhtml#a9d3636ef8212130c876d2cbd16dcc69a',·1,·'UnitCellInfo::UnitCellInfo()'] |
| 39 | ········['../structUnitCellInfo.xhtml',·1,·'UnitCellInfo'] | ||
| 40 | ····]], | 40 | ····]], |
| 41 | ····['unitcelliscompact_23',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]], | 41 | ····['unitcelliscompact_23',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]], |
| 42 | ····['unitcellisrectangular_24',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]], | 42 | ····['unitcellisrectangular_24',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]], |
| 43 | ····['unitcellistriclinic_25',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]], | 43 | ····['unitcellistriclinic_25',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]], |
| 44 | ····['unitcelltype_26',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]], | 44 | ····['unitcelltype_26',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]], |
| 45 | ····['unitcelltypenames_27',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]], | 45 | ····['unitcelltypenames_27',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]], |
| 46 | ····['unittest_5fmain_2ecpp_28',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]], | 46 | ····['unittest_5fmain_2ecpp_28',·['unittest_main.cpp',·['../unittest__main_8cpp.xhtml',·1,·'']]], |
| 47 | ····['unitvector_29',·['unitvector',·['../namespacegmx.xhtml#a5bc71ede59923e4d25b11a995139970a',·1,·'gmx::unitVector()'], | 47 | ····['unitvector_29',·['unitvector',·['../namespacegmx.xhtml#a5bc71ede59923e4d25b11a995139970a',·1,·'gmx::unitVector()'], |
| 48 | ········['../classgmx_1_1BasicVector.xhtml#a4e7218ba6cbb3bc735e31a43597ec7a9',·1,·'gmx::BasicVector::unitVector()'] | 48 | ········['../classgmx_1_1BasicVector.xhtml#a4e7218ba6cbb3bc735e31a43597ec7a9',·1,·'gmx::BasicVector::unitVector()'] |
| 49 | ····]], | 49 | ····]], |
| 50 | ····['unity_30',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]], | 50 | ····['unity_30',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]], |
| 51 | ····['unknown_31',·['unknown',·['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'], | ||
| 52 | ····· | 51 | ····['unknown_31',·['unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'], |
| 53 | ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown: device_information.h'] | 52 | ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown: device_information.h'], |
| 53 | ········['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'] | ||
| 54 | ····]], | 54 | ····]], |
| 55 | ····['unpackandaddhalointernal_32',·['UnpackAndAddHaloInternal',·['../classUnpackAndAddHaloInternal.xhtml',·1,·'']]], | 55 | ····['unpackandaddhalointernal_32',·['UnpackAndAddHaloInternal',·['../classUnpackAndAddHaloInternal.xhtml',·1,·'']]], |
| 56 | ····['unpackhaloexternal_33',·['UnpackHaloExternal',·['../classUnpackHaloExternal.xhtml',·1,·'']]], | 56 | ····['unpackhaloexternal_33',·['UnpackHaloExternal',·['../classUnpackHaloExternal.xhtml',·1,·'']]], |
| 57 | ····['unpackrecvbufkernel_34',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]], | 57 | ····['unpackrecvbufkernel_34',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]], |
| 58 | ····['unpaddedarrayref_35',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]], | 58 | ····['unpaddedarrayref_35',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]], |
| 59 | ····['unpaddedconstarrayref_36',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]], | 59 | ····['unpaddedconstarrayref_36',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]], |
| 60 | ····['unset_37',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]], | 60 | ····['unset_37',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]], |
| 61 | ····['update_38',·['update',·['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'], | ||
| 61 | ····['update_38',·['update',·['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'], | ||
| 62 | ········['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'], | ||
| 63 | ········['../structgmx__ana__selmethod__t.xhtml#a18d9fe0bff35116b4e12cc63c381fb47',·1,·'gmx_ana_selmethod_t::update'], | 62 | ········['../structgmx__ana__selmethod__t.xhtml#a18d9fe0bff35116b4e12cc63c381fb47',·1,·'gmx_ana_selmethod_t::update'], |
| 64 | ········['../classgmx_1_1 | 63 | ········['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'], |
| 64 | ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'] | ||
| 65 | ····]], | 65 | ····]], |
| 66 | ····['update_5fconstrain_5fgpu_2eh_39',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]], | 66 | ····['update_5fconstrain_5fgpu_2eh_39',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]], |
| 67 | ····['update_5fconstrain_5fgpu_5fimpl_2ecpp_40',·['update_constrain_gpu_impl.cpp',·['../update__constrain__gpu__impl_8cpp.xhtml',·1,·'']]], | 67 | ····['update_5fconstrain_5fgpu_5fimpl_2ecpp_40',·['update_constrain_gpu_impl.cpp',·['../update__constrain__gpu__impl_8cpp.xhtml',·1,·'']]], |
| 68 | ····['update_5fconstrain_5fgpu_5fimpl_2eh_41',·['update_constrain_gpu_impl.h',·['../update__constrain__gpu__impl_8h.xhtml',·1,·'']]], | 68 | ····['update_5fconstrain_5fgpu_5fimpl_2eh_41',·['update_constrain_gpu_impl.h',·['../update__constrain__gpu__impl_8h.xhtml',·1,·'']]], |
| 69 | ····['update_5fconstrain_5fgpu_5fimpl_5fstubs_2ecpp_42',·['update_constrain_gpu_impl_stubs.cpp',·['../update__constrain__gpu__impl__stubs_8cpp.xhtml',·1,·'']]], | 69 | ····['update_5fconstrain_5fgpu_5fimpl_5fstubs_2ecpp_42',·['update_constrain_gpu_impl_stubs.cpp',·['../update__constrain__gpu__impl__stubs_8cpp.xhtml',·1,·'']]], |
| 70 | ····['update_5fconstrain_5fgpu_5finternal_2eh_43',·['update_constrain_gpu_internal.h',·['../update__constrain__gpu__internal_8h.xhtml',·1,·'']]], | 70 | ····['update_5fconstrain_5fgpu_5finternal_2eh_43',·['update_constrain_gpu_internal.h',·['../update__constrain__gpu__internal_8h.xhtml',·1,·'']]], |
| 71 | ····['update_5fconstrain_5fgpu_5finternal_5fsycl_2ecpp_44',·['update_constrain_gpu_internal_sycl.cpp',·['../update__constrain__gpu__internal__sycl_8cpp.xhtml',·1,·'']]], | 71 | ····['update_5fconstrain_5fgpu_5finternal_5fsycl_2ecpp_44',·['update_constrain_gpu_internal_sycl.cpp',·['../update__constrain__gpu__internal__sycl_8cpp.xhtml',·1,·'']]], |
| Offset 360, 16 lines modified | Offset 360, 16 lines modified | ||
| 360 | ········['../page_nbnxm.xhtml',·1,·'The·NxM·atom-cluster·non-bonded·algorithm'], | 360 | ········['../page_nbnxm.xhtml',·1,·'The·NxM·atom-cluster·non-bonded·algorithm'], |
| 361 | ········['../page_modularsimulator.xhtml#autotoc_md14',·1,·'The·simulator·algorithm'] | 361 | ········['../page_modularsimulator.xhtml#autotoc_md14',·1,·'The·simulator·algorithm'] |
| 362 | ····]], | 362 | ····]], |
| 363 | ····['algorithm_20builder_221',·['Simulator·algorithm·builder',·['../page_modularsimulator.xhtml#autotoc_md38',·1,·'']]], | 363 | ····['algorithm_20builder_221',·['Simulator·algorithm·builder',·['../page_modularsimulator.xhtml#autotoc_md38',·1,·'']]], |
| 364 | ····['align_5fstep_222',·['ALIGN_STEP',·['../mempool_8cpp.xhtml#a0cd40f06d30a789ea4b0a86f1bb08e20',·1,·'mempool.cpp']]], | 364 | ····['align_5fstep_222',·['ALIGN_STEP',·['../mempool_8cpp.xhtml#a0cd40f06d30a789ea4b0a86f1bb08e20',·1,·'mempool.cpp']]], |
| 365 | ····['alignedallocationpolicy_223',·['AlignedAllocationPolicy',·['../classgmx_1_1AlignedAllocationPolicy.xhtml',·1,·'gmx']]], | 365 | ····['alignedallocationpolicy_223',·['AlignedAllocationPolicy',·['../classgmx_1_1AlignedAllocationPolicy.xhtml',·1,·'gmx']]], |
| 366 | ····['alignedallocator_224',·['AlignedAllocator',·['../namespacegmx.xhtml#ac3ca6adcfda5170180c2140c7b2f9d47',·1,·'gmx']]], | 366 | ····['alignedallocator_224',·['AlignedAllocator',·['../namespacegmx.xhtml#ac3ca6adcfda5170180c2140c7b2f9d47',·1,·'gmx']]], |
| 367 | ····['alignedallocator_2ecpp_225',·['alignedallocator.cpp',·['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'], | 367 | ····['alignedallocator_2ecpp_225',·['alignedallocator.cpp',·['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 368 | ········['../ | 368 | ········['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 369 | ····]], | 369 | ····]], |
| 370 | ····['alignedallocator_2eh_226',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]], | 370 | ····['alignedallocator_2eh_226',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]], |
| 371 | ····['alignedallocator_5fimpl_2eh_227',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]], | 371 | ····['alignedallocator_5fimpl_2eh_227',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]], |
| 372 | ····['alignedarray_3c_20double_2c_20n_20_3e_228',·['AlignedArray<·double,·N·>',·['../structgmx_1_1AlignedArray_3_01double_00_01N_01_4.xhtml',·1,·'gmx']]], | 372 | ····['alignedarray_3c_20double_2c_20n_20_3e_228',·['AlignedArray<·double,·N·>',·['../structgmx_1_1AlignedArray_3_01double_00_01N_01_4.xhtml',·1,·'gmx']]], |
| 373 | ····['alignedarray_3c_20float_2c_20n_20_3e_229',·['AlignedArray<·float,·N·>',·['../structgmx_1_1AlignedArray_3_01float_00_01N_01_4.xhtml',·1,·'gmx']]], | 373 | ····['alignedarray_3c_20float_2c_20n_20_3e_229',·['AlignedArray<·float,·N·>',·['../structgmx_1_1AlignedArray_3_01float_00_01N_01_4.xhtml',·1,·'gmx']]], |
| 374 | ····['alignedfreegeneric_230',·['alignedFreeGeneric',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#ac11fa1cae95de1d83f00000c40f0cfde',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]], | 374 | ····['alignedfreegeneric_230',·['alignedFreeGeneric',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#ac11fa1cae95de1d83f00000c40f0cfde',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]], |
| 375 | ····['alignedmallocgeneric_231',·['alignedMallocGeneric',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#ad8983444d03b6578afb5e28f9ad8dfa8',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]], | 375 | ····['alignedmallocgeneric_231',·['alignedMallocGeneric',·['../namespacegmx_1_1anonymous__namespace_02alignedallocator_8cpp_03.xhtml#ad8983444d03b6578afb5e28f9ad8dfa8',·1,·'gmx::anonymous_namespace{alignedallocator.cpp}']]], |
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| 68 | ········['../classgmx_1_1basic__mdspan.xhtml#a7c22975cf4760a9f66be3e20d83e1e39',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·std::array<·ptrdiff_t,·extents_type::rank_dynamic()>·&dynamic_extents)'], | 68 | ········['../classgmx_1_1basic__mdspan.xhtml#a7c22975cf4760a9f66be3e20d83e1e39',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·std::array<·ptrdiff_t,·extents_type::rank_dynamic()>·&dynamic_extents)'], |
| 69 | ········['../classgmx_1_1basic__mdspan.xhtml#ad98e5109d35223338f274e3bdd850622',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&m)·noexcept'], | 69 | ········['../classgmx_1_1basic__mdspan.xhtml#ad98e5109d35223338f274e3bdd850622',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&m)·noexcept'], |
| 70 | ········['../classgmx_1_1basic__mdspan.xhtml#a869a9eefe1ee5fdbe009f0970533b6c4',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&m,·const·accessor_type·&a)·noexcept'], | 70 | ········['../classgmx_1_1basic__mdspan.xhtml#a869a9eefe1ee5fdbe009f0970533b6c4',·1,·'gmx::basic_mdspan::basic_mdspan(pointer·ptr,·const·mapping_type·&m,·const·accessor_type·&a)·noexcept'], |
| 71 | ········['../classgmx_1_1basic__mdspan.xhtml#aaff0fad86e9316fd92ad9ed713522e62',·1,·'gmx::basic_mdspan::basic_mdspan(U·&&other)'], | 71 | ········['../classgmx_1_1basic__mdspan.xhtml#aaff0fad86e9316fd92ad9ed713522e62',·1,·'gmx::basic_mdspan::basic_mdspan(U·&&other)'], |
| 72 | ········['../classgmx_1_1basic__mdspan.xhtml#a96da2575cb94ba65feb904f78a2bb5eb',·1,·'gmx::basic_mdspan::basic_mdspan(const·U·&other)'], | 72 | ········['../classgmx_1_1basic__mdspan.xhtml#a96da2575cb94ba65feb904f78a2bb5eb',·1,·'gmx::basic_mdspan::basic_mdspan(const·U·&other)'], |
| 73 | ········['../classgmx_1_1basic__mdspan.xhtml#a1af35e8aadb8ddbe4a239879e3db6238',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan<·OtherElementType,·OtherExtents,·OtherLayoutPolicy,·OtherAccessor·>·&rhs)·noexcept'], | 73 | ········['../classgmx_1_1basic__mdspan.xhtml#a1af35e8aadb8ddbe4a239879e3db6238',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan<·OtherElementType,·OtherExtents,·OtherLayoutPolicy,·OtherAccessor·>·&rhs)·noexcept'], |
| 74 | ········['../classgmx_1_1basic__mdspan.xhtml#a3fb425dfe9f5d47d8575a3a5ffe15356',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan·&other)·noexcept=default'], | 74 | ········['../classgmx_1_1basic__mdspan.xhtml#a3fb425dfe9f5d47d8575a3a5ffe15356',·1,·'gmx::basic_mdspan::basic_mdspan(const·basic_mdspan·&other)·noexcept=default'], |
| 75 | ········['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx::basic_mdspan<·ElementType,·Extents,·LayoutPolicy,·AccessorPolicy·>'], | ||
| 76 | ········['../classgmx_1_1basic__mdspan.xhtml#aee5fbcbcd53cd39660f4a224aa28055b',·1,·'gmx::basic_mdspan::basic_mdspan(basic_mdspan·&&other)·noexcept=default'], | 75 | ········['../classgmx_1_1basic__mdspan.xhtml#aee5fbcbcd53cd39660f4a224aa28055b',·1,·'gmx::basic_mdspan::basic_mdspan(basic_mdspan·&&other)·noexcept=default'], |
| 76 | ········['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx::basic_mdspan<·ElementType,·Extents,·LayoutPolicy,·AccessorPolicy·>'], | ||
| 77 | ········['../classgmx_1_1basic__mdspan.xhtml#a023bf1df41290714a1eb67ee9a952ef0',·1,·'gmx::basic_mdspan::basic_mdspan() | 77 | ········['../classgmx_1_1basic__mdspan.xhtml#a023bf1df41290714a1eb67ee9a952ef0',·1,·'gmx::basic_mdspan::basic_mdspan()'] |
| 78 | ····]], | 78 | ····]], |
| 79 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20dynamic_5fextents_5ftype_2c_20layout_5fright_20_3e_31',·['basic_mdspan<·value_type,·dynamic_extents_type,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], | 79 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20dynamic_5fextents_5ftype_2c_20layout_5fright_20_3e_31',·['basic_mdspan<·value_type,·dynamic_extents_type,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], |
| 80 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20extents_2c_20layout_5fright_20_3e_32',·['basic_mdspan<·value_type,·Extents,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], | 80 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20extents_2c_20layout_5fright_20_3e_32',·['basic_mdspan<·value_type,·Extents,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], |
| 81 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_2c_20layout_5fright_20_3e_33',·['basic_mdspan<·value_type,·gmx::extents,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], | 81 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_2c_20layout_5fright_20_3e_33',·['basic_mdspan<·value_type,·gmx::extents,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], |
| 82 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_3c_20dynamic_5fextent_2c_20dynamic_5fextent_20_3e_2c_20layout_5fright_20_3e_34',·['basic_mdspan<·value_type,·gmx::extents<·dynamic_extent,·dynamic_extent·>,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], | 82 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20gmx_3a_3aextents_3c_20dynamic_5fextent_2c_20dynamic_5fextent_20_3e_2c_20layout_5fright_20_3e_34',·['basic_mdspan<·value_type,·gmx::extents<·dynamic_extent,·dynamic_extent·>,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], |
| 83 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20static_5fextents_5ftype_2c_20layout_5fright_20_3e_35',·['basic_mdspan<·value_type,·static_extents_type,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], | 83 | ····['basic_5fmdspan_3c_20value_5ftype_2c_20static_5fextents_5ftype_2c_20layout_5fright_20_3e_35',·['basic_mdspan<·value_type,·static_extents_type,·layout_right·>',·['../classgmx_1_1basic__mdspan.xhtml',·1,·'gmx']]], |
| 84 | ····['basicaveragehistogrammodule_36',·['basicaveragehistogrammodule',·['../classgmx_1_1internal_1_1BasicAverageHistogramModule.xhtml',·1,·'gmx::internal::BasicAverageHistogramModule'], | 84 | ····['basicaveragehistogrammodule_36',·['basicaveragehistogrammodule',·['../classgmx_1_1internal_1_1BasicAverageHistogramModule.xhtml',·1,·'gmx::internal::BasicAverageHistogramModule'], |
| Offset 881, 70 lines modified | Offset 881, 70 lines modified | ||
| 881 | ········['../classgmx_1_1TextOutputStream.xhtml#a8c624ae9199c3bfd37bc35a1beb7852f',·1,·'gmx::TextOutputStream::close()'] | 881 | ········['../classgmx_1_1TextOutputStream.xhtml#a8c624ae9199c3bfd37bc35a1beb7852f',·1,·'gmx::TextOutputStream::close()'] |
| 882 | ····]], | 882 | ····]], |
| 883 | ····['close_5fsymtab_594',·['close_symtab',·['../symtab_8h.xhtml#ac1312ed27b85821cdccb3980d81f8026',·1,·'symtab.h']]], | 883 | ····['close_5fsymtab_594',·['close_symtab',·['../symtab_8h.xhtml#ac1312ed27b85821cdccb3980d81f8026',·1,·'symtab.h']]], |
| 884 | ····['closeafterforcecomputationcpu_595',·['closeAfterForceComputationCpu',·['../classDDBalanceRegionHandler.xhtml#a9bc7829dd33672815fe2aedb19c9e694',·1,·'DDBalanceRegionHandler']]], | 884 | ····['closeafterforcecomputationcpu_595',·['closeAfterForceComputationCpu',·['../classDDBalanceRegionHandler.xhtml#a9bc7829dd33672815fe2aedb19c9e694',·1,·'DDBalanceRegionHandler']]], |
| 885 | ····['closeafterforcecomputationgpu_596',·['closeAfterForceComputationGpu',·['../classDDBalanceRegionHandler.xhtml#abadc78a643b88af716117f0b46ba5473',·1,·'DDBalanceRegionHandler']]], | 885 | ····['closeafterforcecomputationgpu_596',·['closeAfterForceComputationGpu',·['../classDDBalanceRegionHandler.xhtml#abadc78a643b88af716117f0b46ba5473',·1,·'DDBalanceRegionHandler']]], |
| 886 | ····['closelogfile_597',·['closeLogFile',·['../namespacegmx.xhtml#a3f56998ae7a3341da06ae004304cf59a',·1,·'gmx']]], | 886 | ····['closelogfile_597',·['closeLogFile',·['../namespacegmx.xhtml#a3f56998ae7a3341da06ae004304cf59a',·1,·'gmx']]], |
| 887 | ····['closestintegerpoint_598',·['closestIntegerPoint',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#ac925f65cbdb7cead0786b53978e1b525',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]], | 887 | ····['closestintegerpoint_598',·['closestIntegerPoint',·['../namespacegmx_1_1anonymous__namespace_02gausstransform_8cpp_03.xhtml#ac925f65cbdb7cead0786b53978e1b525',·1,·'gmx::anonymous_namespace{gausstransform.cpp}']]], |
| 888 | ····['closetimingregion_599',·['closetimingregion',·['../classGpuRegionTimerImpl.xhtml#aeb3038f3162054db1b0545b5a091bd08',·1,·'GpuRegionTimerImpl::closeTimingRegion()'], | ||
| 889 | ····· | 888 | ····['closetimingregion_599',·['closetimingregion',·['../classGpuRegionTimerWrapper.xhtml#a5ca4467b5e552f30d68ab47a6b232a15',·1,·'GpuRegionTimerWrapper::closeTimingRegion()'], |
| 889 | ········['../classGpuRegionTimerImpl.xhtml#aeb3038f3162054db1b0545b5a091bd08',·1,·'GpuRegionTimerImpl::closeTimingRegion()'] | ||
| 890 | ····]], | 890 | ····]], |
| 891 | ····['cluster_20non_20bonded_20algorithm_600',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]], | 891 | ····['cluster_20non_20bonded_20algorithm_600',·['The·NxM·atom-cluster·non-bonded·algorithm',·['../page_nbnxm.xhtml',·1,·'index']]], |
| 892 | ····['clusterdistancekerneltype_601',·['ClusterDistanceKernelType',·['../clusterdistancekerneltype_8h.xhtml#a6d74049ae6c72289649a7de671a92068',·1,·'clusterdistancekerneltype.h']]], | 892 | ····['clusterdistancekerneltype_601',·['ClusterDistanceKernelType',·['../clusterdistancekerneltype_8h.xhtml#a6d74049ae6c72289649a7de671a92068',·1,·'clusterdistancekerneltype.h']]], |
| 893 | ····['clusterdistancekerneltype_2eh_602',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]], | 893 | ····['clusterdistancekerneltype_2eh_602',·['clusterdistancekerneltype.h',·['../clusterdistancekerneltype_8h.xhtml',·1,·'']]], |
| 894 | ····['clusterflags_603',·['clusterFlags',·['../classNbnxm_1_1Grid.xhtml#a25b73d71c3c4250ca3f4940f16343cca',·1,·'Nbnxm::Grid']]], | 894 | ····['clusterflags_603',·['clusterFlags',·['../classNbnxm_1_1Grid.xhtml#a25b73d71c3c4250ca3f4940f16343cca',·1,·'Nbnxm::Grid']]], |
| 895 | ····['clusterisperturbed_604',·['clusterIsPerturbed',·['../classNbnxm_1_1Grid.xhtml#a3bd7de7b1ee5ff89acfbc6971d520d98',·1,·'Nbnxm::Grid']]], | 895 | ····['clusterisperturbed_604',·['clusterIsPerturbed',·['../classNbnxm_1_1Grid.xhtml#a3bd7de7b1ee5ff89acfbc6971d520d98',·1,·'Nbnxm::Grid']]], |
| 896 | ····['clusters_20of_20warps_605',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]], | 896 | ····['clusters_20of_20warps_605',·['of·packed·j·clusters·*·#·of·warps',·['../structNbnxm_1_1gpu__plist.xhtml#autotoc_md108',·1,·'']]], |
| 897 | ····['clustsize_2ecpp_606',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]], | 897 | ····['clustsize_2ecpp_606',·['clustsize.cpp',·['../clustsize_8cpp.xhtml',·1,·'']]], |
| 898 | ····['cmaincommandlinemodule_607',·['cmaincommandlinemodule',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule'], | 898 | ····['cmaincommandlinemodule_607',·['cmaincommandlinemodule',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#a6f18d9768b76bfe7baa2d7edded17697',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule::CMainCommandLineModule()'], |
| 899 | ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml | 899 | ········['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule'] |
| 900 | ····]], | 900 | ····]], |
| 901 | ····['cmainfunction_608',·['cmainfunction',·['../classgmx_1_1CommandLineModuleManager.xhtml#a68f43fb951aeecbeb60c81dd8701f921',·1,·'gmx::CommandLineModuleManager::CMainFunction'], | ||
| 902 | ····· | 901 | ····['cmainfunction_608',·['cmainfunction',·['../classgmx_1_1anonymous__namespace_02cmdlinemodulemanager_8cpp_03_1_1CMainCommandLineModule.xhtml#aa280311ece46f8039e8f85c4a4ab069a',·1,·'gmx::anonymous_namespace{cmdlinemodulemanager.cpp}::CMainCommandLineModule:[·...·truncated·by·diffoscope;·len:·17,·SHA:·18746c1cadb3aeaa35bdea7d11880e79575ac5b7cbbc95974b1a1fb87c8e725f·...·] |
| 902 | ········['../classgmx_1_1CommandLineModuleManager.xhtml#a68f43fb951aeecbeb60c81dd8701f921',·1,·'gmx::CommandLineModuleManager::CMainFunction'] | ||
| 903 | ····]], | 903 | ····]], |
| 904 | ····['cmake_20tt_20find_5fpackage_20gromacs_20tt_20details_609',·['CMake·<tt>find_package(GROMACS)</tt>·details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'']]], | 904 | ····['cmake_20tt_20find_5fpackage_20gromacs_20tt_20details_609',·['CMake·<tt>find_package(GROMACS)</tt>·details',·['../page_usinglibrary.xhtml#autotoc_md104',·1,·'']]], |
| 905 | ····['cmakegridspacing_610',·['cmakeGridSpacing',·['../structInteractionsOfType.xhtml#aa31e593a7781145976ce9a0dbeff4707',·1,·'InteractionsOfType']]], | 905 | ····['cmakegridspacing_610',·['cmakeGridSpacing',·['../structInteractionsOfType.xhtml#aa31e593a7781145976ce9a0dbeff4707',·1,·'InteractionsOfType']]], |
| 906 | ····['cmap_611',·['cmap',·['../structInteractionsOfType.xhtml#a5f0efc5bc0b4fc4e1340124ba018be82',·1,·'InteractionsOfType']]], | 906 | ····['cmap_611',·['cmap',·['../structInteractionsOfType.xhtml#a5f0efc5bc0b4fc4e1340124ba018be82',·1,·'InteractionsOfType']]], |
| 907 | ····['cmap_5fcoeff_5fmatrix_612',·['cmap_coeff_matrix',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#a190c75eabdb2aee14d27ec1e104e40b4',·1,·'anonymous_namespace{bonded.cpp}']]], | 907 | ····['cmap_5fcoeff_5fmatrix_612',·['cmap_coeff_matrix',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#a190c75eabdb2aee14d27ec1e104e40b4',·1,·'anonymous_namespace{bonded.cpp}']]], |
| 908 | ····['cmap_5fdihs_613',·['cmap_dihs',·['../bonded_8 | 908 | ····['cmap_5fdihs_613',·['cmap_dihs',·['../bonded_8h.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef<·const·real·>,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index): bonded.cpp'], |
| 909 | ········['../bonded_8 | 909 | ········['../bonded_8cpp.xhtml#aa5ccd16bc6fca5281ec8404a2fb64037',·1,·'cmap_dihs(int·nbonds,·const·t_iatom·forceatoms[],·const·t_iparams·forceparams[],·const·gmx_cmap_t·*cmap_grid,·const·rvec·x[],·rvec4·f[],·rvec·fshift[],·const·struct·t_pbc·*pbc,·real·gmx_unused·lambda,·real·gmx_unused·*dvdlambda,·gmx::ArrayRef<·const·real·>,·t_fcdata·gmx_unused·*fcd,·t_disresdata·gmx_unused·*disresdata,·t_oriresdata·gmx_unused·*oriresdata,·int·gmx_unused·*global_atom_index): bonded.cpp'] |
| 910 | ····]], | 910 | ····]], |
| 911 | ····['cmap_5fgrid_614',·['cmap_grid',·['../structgmx__ffparams__t.xhtml#ac2e74e19f8bfd1f20b5bba03606e8784',·1,·'gmx_ffparams_t']]], | 911 | ····['cmap_5fgrid_614',·['cmap_grid',·['../structgmx__ffparams__t.xhtml#ac2e74e19f8bfd1f20b5bba03606e8784',·1,·'gmx_ffparams_t']]], |
| 912 | ····['cmap_5fsetup_5fgrid_5findex_615',·['cmap_setup_grid_index',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#ab633656da7c571ef07545dc40d63e57c',·1,·'anonymous_namespace{bonded.cpp}']]], | 912 | ····['cmap_5fsetup_5fgrid_5findex_615',·['cmap_setup_grid_index',·['../namespaceanonymous__namespace_02bonded_8cpp_03.xhtml#ab633656da7c571ef07545dc40d63e57c',·1,·'anonymous_namespace{bonded.cpp}']]], |
| 913 | ····['cmapangles_616',·['cmapAngles',·['../structInteractionsOfType.xhtml#af6f6506e959d239c2ca71de66cfbd3a0',·1,·'InteractionsOfType']]], | 913 | ····['cmapangles_616',·['cmapAngles',·['../structInteractionsOfType.xhtml#af6f6506e959d239c2ca71de66cfbd3a0',·1,·'InteractionsOfType']]], |
| 914 | ····['cmapatomtypes_617',·['cmapAtomTypes',·['../structInteractionsOfType.xhtml#a6bded5f13e80427d245ffd81766e75b6',·1,·'InteractionsOfType']]], | 914 | ····['cmapatomtypes_617',·['cmapAtomTypes',·['../structInteractionsOfType.xhtml#a6bded5f13e80427d245ffd81766e75b6',·1,·'InteractionsOfType']]], |
| 915 | ····['cmdlinehelpcontext_2ecpp_618',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]], | 915 | ····['cmdlinehelpcontext_2ecpp_618',·['cmdlinehelpcontext.cpp',·['../cmdlinehelpcontext_8cpp.xhtml',·1,·'']]], |
| 916 | ····['cmdlinehelpcontext_2eh_619',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]], | 916 | ····['cmdlinehelpcontext_2eh_619',·['cmdlinehelpcontext.h',·['../cmdlinehelpcontext_8h.xhtml',·1,·'']]], |
| 917 | ····['cmdlinehelpmodule_2ecpp_620',·['cmdlinehelpmodule.cpp',·['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'], | 917 | ····['cmdlinehelpmodule_2ecpp_620',·['cmdlinehelpmodule.cpp',·['../tests_2cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 918 | ········['../ | 918 | ········['../cmdlinehelpmodule_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 919 | ····]], | 919 | ····]], |
| 920 | ····['cmdlinehelpmodule_2eh_621',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]], | 920 | ····['cmdlinehelpmodule_2eh_621',·['cmdlinehelpmodule.h',·['../cmdlinehelpmodule_8h.xhtml',·1,·'']]], |
| 921 | ····['cmdlinehelpwriter_2ecpp_622',·['cmdlinehelpwriter.cpp',·['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'], | 921 | ····['cmdlinehelpwriter_2ecpp_622',·['cmdlinehelpwriter.cpp',·['../tests_2cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 922 | ········['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'] | 922 | ········['../cmdlinehelpwriter_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 923 | ····]], | 923 | ····]], |
| 924 | ····['cmdlinehelpwriter_2eh_623',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]], | 924 | ····['cmdlinehelpwriter_2eh_623',·['cmdlinehelpwriter.h',·['../cmdlinehelpwriter_8h.xhtml',·1,·'']]], |
| 925 | ····['cmdlineinit_2ecpp_624',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]], | 925 | ····['cmdlineinit_2ecpp_624',·['cmdlineinit.cpp',·['../cmdlineinit_8cpp.xhtml',·1,·'']]], |
| 926 | ····['cmdlineinit_2eh_625',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]], | 926 | ····['cmdlineinit_2eh_625',·['cmdlineinit.h',·['../cmdlineinit_8h.xhtml',·1,·'']]], |
| 927 | ····['cmdlinemodule_2ecpp_626',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]], | 927 | ····['cmdlinemodule_2ecpp_626',·['cmdlinemodule.cpp',·['../cmdlinemodule_8cpp.xhtml',·1,·'']]], |
| 928 | ····['cmdlinemodule_2eh_627',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]], | 928 | ····['cmdlinemodule_2eh_627',·['cmdlinemodule.h',·['../cmdlinemodule_8h.xhtml',·1,·'']]], |
| 929 | ····['cmdlinemodulemanager_2ecpp_628',·['cmdlinemodulemanager.cpp',·['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'], | 929 | ····['cmdlinemodulemanager_2ecpp_628',·['cmdlinemodulemanager.cpp',·['../tests_2cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 930 | ········['../ | 930 | ········['../cmdlinemodulemanager_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 931 | ····]], | 931 | ····]], |
| 932 | ····['cmdlinemodulemanager_2eh_629',·['cmdlinemodulemanager.h',·['../cmdlinemodulemanager_8h.xhtml',·1,·'']]], | 932 | ····['cmdlinemodulemanager_2eh_629',·['cmdlinemodulemanager.h',·['../cmdlinemodulemanager_8h.xhtml',·1,·'']]], |
| 933 | ····['cmdlinemodulemanager_5fimpl_2eh_630',·['cmdlinemodulemanager_impl.h',·['../cmdlinemodulemanager__impl_8h.xhtml',·1,·'']]], | 933 | ····['cmdlinemodulemanager_5fimpl_2eh_630',·['cmdlinemodulemanager_impl.h',·['../cmdlinemodulemanager__impl_8h.xhtml',·1,·'']]], |
| 934 | ····['cmdlinemodulemanagertest_2ecpp_631',·['cmdlinemodulemanagertest.cpp',·['../cmdlinemodulemanagertest_8cpp.xhtml',·1,·'']]], | 934 | ····['cmdlinemodulemanagertest_2ecpp_631',·['cmdlinemodulemanagertest.cpp',·['../cmdlinemodulemanagertest_8cpp.xhtml',·1,·'']]], |
| 935 | ····['cmdlinemodulemanagertest_2eh_632',·['cmdlinemodulemanagertest.h',·['../cmdlinemodulemanagertest_8h.xhtml',·1,·'']]], | 935 | ····['cmdlinemodulemanagertest_2eh_632',·['cmdlinemodulemanagertest.h',·['../cmdlinemodulemanagertest_8h.xhtml',·1,·'']]], |
| 936 | ····['cmdlineoptionsmodule_2ecpp_633',·['cmdlineoptionsmodule.cpp',·['../cmdlineoptionsmodule_8cpp.xhtml',·1,·'']]], | 936 | ····['cmdlineoptionsmodule_2ecpp_633',·['cmdlineoptionsmodule.cpp',·['../cmdlineoptionsmodule_8cpp.xhtml',·1,·'']]], |
| 937 | ····['cmdlineoptionsmodule_2eh_634',·['cmdlineoptionsmodule.h',·['../cmdlineoptionsmodule_8h.xhtml',·1,·'']]], | 937 | ····['cmdlineoptionsmodule_2eh_634',·['cmdlineoptionsmodule.h',·['../cmdlineoptionsmodule_8h.xhtml',·1,·'']]], |
| 938 | ····['cmdlineparser_2ecpp_635',·['cmdlineparser.cpp',·['../cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)'], | 938 | ····['cmdlineparser_2ecpp_635',·['cmdlineparser.cpp',·['../cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 939 | ········['../tests_2cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)'] | 939 | ········['../tests_2cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 940 | ····]], | 940 | ····]], |
| 941 | ····['cmdlineparser_2eh_636',·['cmdlineparser.h',·['../cmdlineparser_8h.xhtml',·1,·'']]], | 941 | ····['cmdlineparser_2eh_636',·['cmdlineparser.h',·['../cmdlineparser_8h.xhtml',·1,·'']]], |
| 942 | ····['cmdlineprogramcontext_2ecpp_637',·['cmdlineprogramcontext.cpp',·['../cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'], | 942 | ····['cmdlineprogramcontext_2ecpp_637',·['cmdlineprogramcontext.cpp',·['../tests_2cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 943 | ········['../ | 943 | ········['../cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 944 | ····]], | 944 | ····]], |
| 945 | ····['cmdlineprogramcontext_2eh_638',·['cmdlineprogramcontext.h',·['../cmdlineprogramcontext_8h.xhtml',·1,·'']]], | 945 | ····['cmdlineprogramcontext_2eh_638',·['cmdlineprogramcontext.h',·['../cmdlineprogramcontext_8h.xhtml',·1,·'']]], |
| 946 | ····['cmdlinerunner_2ecpp_639',·['cmdlinerunner.cpp',·['../cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'], | 946 | ····['cmdlinerunner_2ecpp_639',·['cmdlinerunner.cpp',·['../cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 947 | ········['../tests_2cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'] | 947 | ········['../tests_2cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 948 | ····]], | 948 | ····]], |
| 949 | ····['cmdlinerunner_2eh_640',·['cmdlinerunner.h',·['../cmdlinerunner_8h.xhtml',·1,·'']]], | 949 | ····['cmdlinerunner_2eh_640',·['cmdlinerunner.h',·['../cmdlinerunner_8h.xhtml',·1,·'']]], |
| 950 | ····['cmdlinetest_2ecpp_641',·['cmdlinetest.cpp',·['../cmdlinetest_8cpp.xhtml',·1,·'']]], | 950 | ····['cmdlinetest_2ecpp_641',·['cmdlinetest.cpp',·['../cmdlinetest_8cpp.xhtml',·1,·'']]], |
| Offset 287, 16 lines modified | Offset 287, 16 lines modified | ||
| 287 | ····['ddcellindex_5f_163',·['ddCellIndex_',·['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a102dec18a3918be269417ea2fcdbb481',·1,·'gmx::DomainDecompositionBuilder::Impl']]], | 287 | ····['ddcellindex_5f_163',·['ddCellIndex_',·['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a102dec18a3918be269417ea2fcdbb481',·1,·'gmx::DomainDecompositionBuilder::Impl']]], |
| 288 | ····['dddimensions_164',·['ddDimensions',·['../structDDGridSetup.xhtml#a59cdc4d9758766e953abab84320803b4',·1,·'DDGridSetup']]], | 288 | ····['dddimensions_164',·['ddDimensions',·['../structDDGridSetup.xhtml#a59cdc4d9758766e953abab84320803b4',·1,·'DDGridSetup']]], |
| 289 | ····['ddgetatominfo_165',·['ddGetAtomInfo',·['../domdec_2utility_8h.xhtml#a155480532c8a0a96130c1751c53cc868',·1,·'utility.h']]], | 289 | ····['ddgetatominfo_165',·['ddGetAtomInfo',·['../domdec_2utility_8h.xhtml#a155480532c8a0a96130c1751c53cc868',·1,·'utility.h']]], |
| 290 | ····['ddglatnr_166',·['ddglatnr',·['../domdec_8h.xhtml#a70ac1da1701259851d5c21c733196097',·1,·'domdec.cpp']]], | 290 | ····['ddglatnr_166',·['ddglatnr',·['../domdec_8h.xhtml#a70ac1da1701259851d5c21c733196097',·1,·'domdec.cpp']]], |
| 291 | ····['ddgridsetup_167',·['DDGridSetup',·['../structDDGridSetup.xhtml',·1,·'']]], | 291 | ····['ddgridsetup_167',·['DDGridSetup',·['../structDDGridSetup.xhtml',·1,·'']]], |
| 292 | ····['ddgridsetup_5f_168',·['ddGridSetup_',·['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a4639d4e85f45dafe34dc33a8f6ed32e5',·1,·'gmx::DomainDecompositionBuilder::Impl']]], | 292 | ····['ddgridsetup_5f_168',·['ddGridSetup_',·['../classgmx_1_1DomainDecompositionBuilder_1_1Impl.xhtml#a4639d4e85f45dafe34dc33a8f6ed32e5',·1,·'gmx::DomainDecompositionBuilder::Impl']]], |
| 293 | ····['ddist_169',·['ddist',·['../classgmx_1_1Lincs.xhtml#a0fc142a5b0b472519332eb5360c4dce4',·1,·'gmx::Lincs']]], | 293 | ····['ddist_169',·['ddist',·['../classgmx_1_1Lincs.xhtml#a0fc142a5b0b472519332eb5360c4dce4',·1,·'gmx::Lincs']]], |
| 294 | ····['ddmain_170',·['ddmain',·['../domdec__struct_8h.xhtml#afc22561cfcc8cc698df33a9a9f95dcdf',·1,·'DDMAIN(const·gmx_domdec_t·*dd): domdec_struct.h'], | ||
| 294 | ···· | 295 | ········['../domdec__struct_8h.xhtml#a95a945afe4a10023a43212167976cbe7',·1,·'DDMAIN(const·gmx_domdec_t·&dd): domdec_struct.h'] |
| 295 | ········['../domdec__struct_8h.xhtml#afc22561cfcc8cc698df33a9a9f95dcdf',·1,·'DDMAIN(const·gmx_domdec_t·*dd): domdec_struct.h'] | ||
| 296 | ····]], | 296 | ····]], |
| 297 | ····['ddmainrank_171',·['DDMAINRANK',·['../domdec__network_8cpp.xhtml#ada792d6e90ffaa2bda1705b837d66c1f',·1,·'domdec_network.cpp']]], | 297 | ····['ddmainrank_171',·['DDMAINRANK',·['../domdec__network_8cpp.xhtml#ada792d6e90ffaa2bda1705b837d66c1f',·1,·'domdec_network.cpp']]], |
| 298 | ····['ddp_5fcount_172',·['ddp_count',·['../classt__state.xhtml#a16d8fbbde860871a552cd45c1d97aece',·1,·'t_state']]], | 298 | ····['ddp_5fcount_172',·['ddp_count',·['../classt__state.xhtml#a16d8fbbde860871a552cd45c1d97aece',·1,·'t_state']]], |
| 299 | ····['ddp_5fcount_5fcg_5fgl_173',·['ddp_count_cg_gl',·['../classt__state.xhtml#af356c56c20ca98911e9dbe927bacd488',·1,·'t_state']]], | 299 | ····['ddp_5fcount_5fcg_5fgl_173',·['ddp_count_cg_gl',·['../classt__state.xhtml#af356c56c20ca98911e9dbe927bacd488',·1,·'t_state']]], |
| 300 | ····['ddpairinteractionranges_174',·['DDPairInteractionRanges',·['../structDDPairInteractionRanges.xhtml',·1,·'']]], | 300 | ····['ddpairinteractionranges_174',·['DDPairInteractionRanges',·['../structDDPairInteractionRanges.xhtml',·1,·'']]], |
| 301 | ····['ddpcountpairsearch_175',·['ddpCountPairSearch',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#abade9224d4cd94ec258e7a382684c401',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]], | 301 | ····['ddpcountpairsearch_175',·['ddpCountPairSearch',·['../classanonymous__namespace_02minimize_8cpp_03_1_1EnergyEvaluator.xhtml#abade9224d4cd94ec258e7a382684c401',·1,·'anonymous_namespace{minimize.cpp}::EnergyEvaluator']]], |
| 302 | ····['ddrankorder_176',·['DdRankOrder',·['../namespacegmx.xhtml#a9b2fd966c924499613d71524e3d69471',·1,·'gmx']]], | 302 | ····['ddrankorder_176',·['DdRankOrder',·['../namespacegmx.xhtml#a9b2fd966c924499613d71524e3d69471',·1,·'gmx']]], |
| Offset 336, 16 lines modified | Offset 336, 16 lines modified | ||
| 336 | ····['energycomparison_197',·['energycomparison',·['../classgmx_1_1test_1_1EnergyComparison.xhtml#aafb2df8ef9a36c6a3cffc8ac57cf2645',·1,·'gmx::test::EnergyComparison::EnergyComparison()'], | 336 | ····['energycomparison_197',·['energycomparison',·['../classgmx_1_1test_1_1EnergyComparison.xhtml#aafb2df8ef9a36c6a3cffc8ac57cf2645',·1,·'gmx::test::EnergyComparison::EnergyComparison()'], |
| 337 | ········['../classgmx_1_1test_1_1EnergyComparison.xhtml',·1,·'gmx::test::EnergyComparison'] | 337 | ········['../classgmx_1_1test_1_1EnergyComparison.xhtml',·1,·'gmx::test::EnergyComparison'] |
| 338 | ····]], | 338 | ····]], |
| 339 | ····['energycomparison_2ecpp_198',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]], | 339 | ····['energycomparison_2ecpp_198',·['energycomparison.cpp',·['../energycomparison_8cpp.xhtml',·1,·'']]], |
| 340 | ····['energycomparison_2eh_199',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]], | 340 | ····['energycomparison_2eh_199',·['energycomparison.h',·['../energycomparison_8h.xhtml',·1,·'']]], |
| 341 | ····['energycomparison_5f_200',·['energyComparison_',·['../classgmx_1_1test_1_1PeriodicActionsTest.xhtml#accffb92e7241f0a2b319173bcc6e239a',·1,·'gmx::test::PeriodicActionsTest']]], | 341 | ····['energycomparison_5f_200',·['energyComparison_',·['../classgmx_1_1test_1_1PeriodicActionsTest.xhtml#accffb92e7241f0a2b319173bcc6e239a',·1,·'gmx::test::PeriodicActionsTest']]], |
| 342 | ····['energycontribution_201',·['EnergyContribution',·['../namespacegmx.xhtml#a41036212ab3b994374d2c2f02772427c',·1,·'gmx']]], | 342 | ····['energycontribution_201',·['EnergyContribution',·['../namespacegmx.xhtml#a41036212ab3b994374d2c2f02772427c',·1,·'gmx']]], |
| 343 | ····['energydata_202',·['energydata',·['../classgmx_1_1EnergyData.xhtml',·1,·'gmx::EnergyData'], | ||
| 344 | ····· | 343 | ····['energydata_202',·['energydata',·['../classgmx_1_1EnergyData.xhtml#a15119585f028d3e0501e51fd4ab690b2',·1,·'gmx::EnergyData::EnergyData()'], |
| 344 | ········['../classgmx_1_1EnergyData.xhtml',·1,·'gmx::EnergyData'] | ||
| 345 | ····]], | 345 | ····]], |
| 346 | ····['energydata_20tt_203',·['<tt>EnergyData</tt>',·['../page_modularsimulator.xhtml#autotoc_md36',·1,·'']]], | 346 | ····['energydata_20tt_203',·['<tt>EnergyData</tt>',·['../page_modularsimulator.xhtml#autotoc_md36',·1,·'']]], |
| 347 | ····['energydata_2ecpp_204',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]], | 347 | ····['energydata_2ecpp_204',·['energydata.cpp',·['../energydata_8cpp.xhtml',·1,·'']]], |
| 348 | ····['energydata_2eh_205',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]], | 348 | ····['energydata_2eh_205',·['energydata.h',·['../energydata_8h.xhtml',·1,·'']]], |
| 349 | ····['energydata_3a_3aelement_20tt_206',·['<tt>EnergyData::Element</tt>',·['../page_modularsimulator.xhtml#autotoc_md32',·1,·'']]], | 349 | ····['energydata_3a_3aelement_20tt_206',·['<tt>EnergyData::Element</tt>',·['../page_modularsimulator.xhtml#autotoc_md32',·1,·'']]], |
| 350 | ····['energydrift_207',·['energyDrift',·['../classgmx_1_1EnergyDriftTracker.xhtml#af7dcf448940396b29c3ffb9e935fee66',·1,·'gmx::EnergyDriftTracker']]], | 350 | ····['energydrift_207',·['energyDrift',·['../classgmx_1_1EnergyDriftTracker.xhtml#af7dcf448940396b29c3ffb9e935fee66',·1,·'gmx::EnergyDriftTracker']]], |
| 351 | ····['energydriftstring_208',·['energyDriftString',·['../classgmx_1_1EnergyDriftTracker.xhtml#ae353361ca2765e1c7655c1862fb49723',·1,·'gmx::EnergyDriftTracker']]], | 351 | ····['energydriftstring_208',·['energyDriftString',·['../classgmx_1_1EnergyDriftTracker.xhtml#ae353361ca2765e1c7655c1862fb49723',·1,·'gmx::EnergyDriftTracker']]], |
| Offset 106, 42 lines modified | Offset 106, 42 lines modified | ||
| 106 | ········['../classgmx_1_1test_1_1TestFileInputRedirector.xhtml#a0e57297bb9ca78465d3d1fab981edc52',·1,·'gmx::test::TestFileInputRedirector::fileExists()'] | 106 | ········['../classgmx_1_1test_1_1TestFileInputRedirector.xhtml#a0e57297bb9ca78465d3d1fab981edc52',·1,·'gmx::test::TestFileInputRedirector::fileExists()'] |
| 107 | ····]], | 107 | ····]], |
| 108 | ····['filegeneration_69',·['fileGeneration',·['../structTpxFileHeader.xhtml#a84a10ca670608eb96c039d20d61e334b',·1,·'TpxFileHeader']]], | 108 | ····['filegeneration_69',·['fileGeneration',·['../structTpxFileHeader.xhtml#a84a10ca670608eb96c039d20d61e334b',·1,·'TpxFileHeader']]], |
| 109 | ····['fileindex_70',·['fileIndex',·['../classgmx_1_1EnergyTerm.xhtml#ab4c81c07ccaef47d2bcf6dcee4b921ac',·1,·'gmx::EnergyTerm']]], | 109 | ····['fileindex_70',·['fileIndex',·['../classgmx_1_1EnergyTerm.xhtml#ab4c81c07ccaef47d2bcf6dcee4b921ac',·1,·'gmx::EnergyTerm']]], |
| 110 | ····['fileioerror_71',·['fileioerror',·['../classgmx_1_1FileIOError.xhtml',·1,·'gmx::FileIOError'], | 110 | ····['fileioerror_71',·['fileioerror',·['../classgmx_1_1FileIOError.xhtml',·1,·'gmx::FileIOError'], |
| 111 | ········['../classgmx_1_1FileIOError.xhtml#a24a714cd22c57b8cb91fa2c5f37fafe9',·1,·'gmx::FileIOError::FileIOError()'] | 111 | ········['../classgmx_1_1FileIOError.xhtml#a24a714cd22c57b8cb91fa2c5f37fafe9',·1,·'gmx::FileIOError::FileIOError()'] |
| 112 | ····]], | 112 | ····]], |
| 113 | ····['fileioxdrserializer_72',·['fileioxdrserializer',·['../classgmx_1_1FileIOXdrSerializer.xhtml',·1,·'gmx::FileIOXdrSerializer'], | ||
| 113 | ···· | 114 | ········['../classgmx_1_1FileIOXdrSerializer.xhtml#a91b67e0ad48c2cb8908fbd70bfcb61ed',·1,·'gmx::FileIOXdrSerializer::FileIOXdrSerializer()'] |
| 114 | ········['../classgmx_1_1FileIOXdrSerializer.xhtml',·1,·'gmx::FileIOXdrSerializer'] | ||
| 115 | ····]], | 115 | ····]], |
| 116 | ····['fileioxdrserializer_2ecpp_73',·['fileioxdrserializer.cpp',·['../fileioxdrserializer_8cpp.xhtml',·1,·'']]], | 116 | ····['fileioxdrserializer_2ecpp_73',·['fileioxdrserializer.cpp',·['../fileioxdrserializer_8cpp.xhtml',·1,·'']]], |
| 117 | ····['filemanager_74',·['fileManager',·['../classgmx_1_1test_1_1CommandLineTestBase.xhtml#a5899f9f12453f75da2a4af840a1c4b59',·1,·'gmx::test::CommandLineTestBase']]], | 117 | ····['filemanager_74',·['fileManager',·['../classgmx_1_1test_1_1CommandLineTestBase.xhtml#a5899f9f12453f75da2a4af840a1c4b59',·1,·'gmx::test::CommandLineTestBase']]], |
| 118 | ····['filemanager_5f_75',·['filemanager_',·['../classgmx_1_1test_1_1 | 118 | ····['filemanager_5f_75',·['filemanager_',·['../classgmx_1_1test_1_1anonymous__namespace_02energyoutput_8cpp_03_1_1EnergyOutputTest.xhtml#a6739c595dc4466b69220fdf1dfbe3d71',·1,·'gmx::test::anonymous_namespace{energyoutput.cpp}::EnergyOutputTest::fileManager_'], |
| 119 | ········['../classgmx_1_1test_1_1MultiSimTest.xhtml#a00ccab41b824db52825528838326ae91',·1,·'gmx::test::MultiSimTest::fileManager_'], | 119 | ········['../classgmx_1_1test_1_1MultiSimTest.xhtml#a00ccab41b824db52825528838326ae91',·1,·'gmx::test::MultiSimTest::fileManager_'], |
| 120 | ········['../classgmx_1_1test_1_1 | 120 | ········['../classgmx_1_1test_1_1MdrunTestFixture.xhtml#a2141d1eeae99b891fdd4aabc9de3dccb',·1,·'gmx::test::MdrunTestFixture::fileManager_'] |
| 121 | ····]], | 121 | ····]], |
| 122 | ····['filematcherpointer_76',·['FileMatcherPointer',·['../namespacegmx_1_1test.xhtml#a96729fee4a52b37c0ae0784af1e9eaa3',·1,·'gmx::test']]], | 122 | ····['filematcherpointer_76',·['FileMatcherPointer',·['../namespacegmx_1_1test.xhtml#a96729fee4a52b37c0ae0784af1e9eaa3',·1,·'gmx::test']]], |
| 123 | ····['filematchers_2ecpp_77',·['filematchers.cpp',·['../filematchers_8cpp.xhtml',·1,·'']]], | 123 | ····['filematchers_2ecpp_77',·['filematchers.cpp',·['../filematchers_8cpp.xhtml',·1,·'']]], |
| 124 | ····['filematchers_2eh_78',·['filematchers.h',·['../filematchers_8h.xhtml',·1,·'']]], | 124 | ····['filematchers_2eh_78',·['filematchers.h',·['../filematchers_8h.xhtml',·1,·'']]], |
| 125 | ····['filemd5_2ecpp_79',·['filemd5.cpp',·['../filemd5_8cpp.xhtml',·1,·'']]], | 125 | ····['filemd5_2ecpp_79',·['filemd5.cpp',·['../filemd5_8cpp.xhtml',·1,·'']]], |
| 126 | ····['filename_80',·['filename',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml#a7277965d1f059e01d997e98b270af2bb',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}::ManualOutputFile']]], | 126 | ····['filename_80',·['filename',·['../structgmx_1_1test_1_1anonymous__namespace_02extract__cluster_8cpp_03_1_1ManualOutputFile.xhtml#a7277965d1f059e01d997e98b270af2bb',·1,·'gmx::test::anonymous_namespace{extract_cluster.cpp}::ManualOutputFile']]], |
| 127 | ····['filenamelist_81',·['FileNameList',·['../classgmx_1_1test_1_1TestFileManager_1_1Impl.xhtml#a00100912857556c2a0467cd7e0591282',·1,·'gmx::test::TestFileManager::Impl']]], | 127 | ····['filenamelist_81',·['FileNameList',·['../classgmx_1_1test_1_1TestFileManager_1_1Impl.xhtml#a00100912857556c2a0467cd7e0591282',·1,·'gmx::test::TestFileManager::Impl']]], |
| 128 | ····['filenameoption_82',·['filenameoption',·['../classgmx_1_1FileNameOption.xhtml',·1,·'gmx::FileNameOption'], | ||
| 128 | ···· | 129 | ········['../classgmx_1_1FileNameOption.xhtml#a4057766b5851a4d02b3913f1984b3891',·1,·'gmx::FileNameOption::FileNameOption()'] |
| 129 | ········['../classgmx_1_1FileNameOption.xhtml',·1,·'gmx::FileNameOption'] | ||
| 130 | ····]], | 130 | ····]], |
| 131 | ····['filenameoption_2ecpp_83',·['filenameoption.cpp',·['../tests_2filenameoption_8cpp.xhtml',·1,·'(Global·Namespace)'], | 131 | ····['filenameoption_2ecpp_83',·['filenameoption.cpp',·['../tests_2filenameoption_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 132 | ········['../filenameoption_8cpp.xhtml',·1,·'(Global·Namespace)'] | 132 | ········['../filenameoption_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 133 | ····]], | 133 | ····]], |
| 134 | ····['filenameoption_2eh_84',·['filenameoption.h',·['../filenameoption_8h.xhtml',·1,·'']]], | 134 | ····['filenameoption_2eh_84',·['filenameoption.h',·['../filenameoption_8h.xhtml',·1,·'']]], |
| 135 | ····['filenameoptioninfo_85',·['filenameoptioninfo',·['../classgmx_1_1FileNameOptionInfo.xhtml#a90b3bff35cc93cf1efeedb70532f9f87',·1,·'gmx::FileNameOptionInfo::FileNameOptionInfo()'], | 135 | ····['filenameoptioninfo_85',·['filenameoptioninfo',·['../classgmx_1_1FileNameOptionInfo.xhtml#a90b3bff35cc93cf1efeedb70532f9f87',·1,·'gmx::FileNameOptionInfo::FileNameOptionInfo()'], |
| 136 | ········['../classgmx_1_1FileNameOptionInfo.xhtml',·1,·'gmx::FileNameOptionInfo'] | 136 | ········['../classgmx_1_1FileNameOptionInfo.xhtml',·1,·'gmx::FileNameOptionInfo'] |
| 137 | ····]], | 137 | ····]], |
| 138 | ····['filenameoptionmanager_86',·['FileNameOptionManager',·['../classgmx_1_1FileNameOptionManager.xhtml',·1,·'gmx']]], | 138 | ····['filenameoptionmanager_86',·['FileNameOptionManager',·['../classgmx_1_1FileNameOptionManager.xhtml',·1,·'gmx']]], |
| 139 | ····['filenameoptionmanager_2ecpp_87',·['filenameoptionmanager.cpp',·['../ | 139 | ····['filenameoptionmanager_2ecpp_87',·['filenameoptionmanager.cpp',·['../filenameoptionmanager_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 140 | ········['../filenameoptionmanager_8cpp.xhtml',·1,·'(Global·Namespace)'] | 140 | ········['../tests_2filenameoptionmanager_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 141 | ····]], | 141 | ····]], |
| 142 | ····['filenameoptionmanager_2eh_88',·['filenameoptionmanager.h',·['../filenameoptionmanager_8h.xhtml',·1,·'']]], | 142 | ····['filenameoptionmanager_2eh_88',·['filenameoptionmanager.h',·['../filenameoptionmanager_8h.xhtml',·1,·'']]], |
| 143 | ····['filenameoptionstorage_89',·['filenameoptionstorage',·['../classgmx_1_1FileNameOption.xhtml#a6d331375fa7933f89616320d8eca541a',·1,·'gmx::FileNameOption::FileNameOptionStorage'], | 143 | ····['filenameoptionstorage_89',·['filenameoptionstorage',·['../classgmx_1_1FileNameOption.xhtml#a6d331375fa7933f89616320d8eca541a',·1,·'gmx::FileNameOption::FileNameOptionStorage'], |
| 144 | ········['../classgmx_1_1FileNameOptionStorage.xhtml#ae371defde227f55e1b6a4753301bcc5d',·1,·'gmx::FileNameOptionStorage::FileNameOptionStorage()'], | 144 | ········['../classgmx_1_1FileNameOptionStorage.xhtml#ae371defde227f55e1b6a4753301bcc5d',·1,·'gmx::FileNameOptionStorage::FileNameOptionStorage()'], |
| 145 | ········['../classgmx_1_1FileNameOptionStorage.xhtml',·1,·'gmx::FileNameOptionStorage'] | 145 | ········['../classgmx_1_1FileNameOptionStorage.xhtml',·1,·'gmx::FileNameOptionStorage'] |
| 146 | ····]], | 146 | ····]], |
| 147 | ····['filenameoptionstorage_2eh_90',·['filenameoptionstorage.h',·['../filenameoptionstorage_8h.xhtml',·1,·'']]], | 147 | ····['filenameoptionstorage_2eh_90',·['filenameoptionstorage.h',·['../filenameoptionstorage_8h.xhtml',·1,·'']]], |
| Offset 54, 67 lines modified | Offset 54, 67 lines modified | ||
| 54 | ····['gammadistribution_39',·['gammadistribution',·['../classgmx_1_1GammaDistribution.xhtml#a504c8a74cfe78791b6e0fb1549aa95aa',·1,·'gmx::GammaDistribution::GammaDistribution(result_type·alpha=1.0,·result_type·theta=1.0)'], | 54 | ····['gammadistribution_39',·['gammadistribution',·['../classgmx_1_1GammaDistribution.xhtml#a504c8a74cfe78791b6e0fb1549aa95aa',·1,·'gmx::GammaDistribution::GammaDistribution(result_type·alpha=1.0,·result_type·theta=1.0)'], |
| 55 | ········['../classgmx_1_1GammaDistribution.xhtml#a3e85f1c638a75a3add4e42730d104696',·1,·'gmx::GammaDistribution::GammaDistribution(const·param_type·&param)'], | 55 | ········['../classgmx_1_1GammaDistribution.xhtml#a3e85f1c638a75a3add4e42730d104696',·1,·'gmx::GammaDistribution::GammaDistribution(const·param_type·&param)'], |
| 56 | ········['../classgmx_1_1GammaDistribution.xhtml',·1,·'gmx::GammaDistribution<·RealType·>'] | 56 | ········['../classgmx_1_1GammaDistribution.xhtml',·1,·'gmx::GammaDistribution<·RealType·>'] |
| 57 | ····]], | 57 | ····]], |
| 58 | ····['gammadistribution_2ecpp_40',·['gammadistribution.cpp',·['../gammadistribution_8cpp.xhtml',·1,·'']]], | 58 | ····['gammadistribution_2ecpp_40',·['gammadistribution.cpp',·['../gammadistribution_8cpp.xhtml',·1,·'']]], |
| 59 | ····['gammadistribution_2eh_41',·['gammadistribution.h',·['../gammadistribution_8h.xhtml',·1,·'']]], | 59 | ····['gammadistribution_2eh_41',·['gammadistribution.h',·['../gammadistribution_8h.xhtml',·1,·'']]], |
| 60 | ····['gatherinputparameters_42',·['GatherInputParameters',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03.xhtml#a362d4e2b7aca10df5d1f78cba9d1c235',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}']]], | 60 | ····['gatherinputparameters_42',·['GatherInputParameters',·['../namespacegmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03.xhtml#a362d4e2b7aca10df5d1f78cba9d1c235',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}']]], |
| 61 | ····['gatherintfrommultisimulation_43',·['gatherintfrommultisimulation',·['../multisim_8h.xhtml#a26ace2b27afcb558d72f98de9f43a645',·1,·'gatherIntFromMultiSimulation(const·gmx_multisim_t·*ms,·int·localValue): multisim.cpp'], | ||
| 62 | ····· | 61 | ····['gatherintfrommultisimulation_43',·['gatherintfrommultisimulation',·['../gromacs_2mdrunutility_2multisim_8cpp.xhtml#ae0afb120203682679347d7b3718605b0',·1,·'gatherIntFromMultiSimulation(const·gmx_multisim_t·*ms,·const·int·localValue): multisim.cpp'], |
| 62 | ········['../multisim_8h.xhtml#a26ace2b27afcb558d72f98de9f43a645',·1,·'gatherIntFromMultiSimulation(const·gmx_multisim_t·*ms,·int·localValue): multisim.cpp'] | ||
| 63 | ····]], | 63 | ····]], |
| 64 | ····['gatherloadbysimdinttranspose_44',·['gatherloadbysimdinttranspose',·['../group__module__simd.xhtml#ga1008329474744f6987edf28c4124ac24',·1,·'gmx::gatherLoadBySimdIntTranspose(const·double·*base,·SimdDInt32·offset,·SimdDouble·*v0,·SimdDouble·*v1,·SimdDouble·*v2,·SimdDouble·*v3)'], | 64 | ····['gatherloadbysimdinttranspose_44',·['gatherloadbysimdinttranspose',·['../group__module__simd.xhtml#ga1008329474744f6987edf28c4124ac24',·1,·'gmx::gatherLoadBySimdIntTranspose(const·double·*base,·SimdDInt32·offset,·SimdDouble·*v0,·SimdDouble·*v1,·SimdDouble·*v2,·SimdDouble·*v3)'], |
| 65 | ········['../group__module__simd.xhtml#ga11385272a2b5123ca3aa3e5696e55dbc',·1,·'gmx::gatherLoadBySimdIntTranspose(const·double·*base,·SimdDInt32·offset,·SimdDouble·*v0,·SimdDouble·*v1)'], | 65 | ········['../group__module__simd.xhtml#ga11385272a2b5123ca3aa3e5696e55dbc',·1,·'gmx::gatherLoadBySimdIntTranspose(const·double·*base,·SimdDInt32·offset,·SimdDouble·*v0,·SimdDouble·*v1)'], |
| 66 | ········['../group__module__simd.xhtml#gac7ba60b7340036a984888bbca43616e4',·1,·'gmx::gatherLoadBySimdIntTranspose(const·float·*base,·SimdFInt32·offset,·SimdFloat·*v0,·SimdFloat·*v1,·SimdFloat·*v2,·SimdFloat·*v3)'], | 66 | ········['../group__module__simd.xhtml#gac7ba60b7340036a984888bbca43616e4',·1,·'gmx::gatherLoadBySimdIntTranspose(const·float·*base,·SimdFInt32·offset,·SimdFloat·*v0,·SimdFloat·*v1,·SimdFloat·*v2,·SimdFloat·*v3)'], |
| 67 | ········['../group__module__simd.xhtml#ga98bde531b096434095b228308e7a3025',·1,·'gmx::gatherLoadBySimdIntTranspose(const·float·*base,·SimdFInt32·offset,·SimdFloat·*v0,·SimdFloat·*v1)'], | 67 | ········['../group__module__simd.xhtml#ga98bde531b096434095b228308e7a3025',·1,·'gmx::gatherLoadBySimdIntTranspose(const·float·*base,·SimdFInt32·offset,·SimdFloat·*v0,·SimdFloat·*v1)'], |
| 68 | ········['../namespacegmx.xhtml#a179f05bc9899fe2b7e71d53a1a95b629',·1,·'gmx::gatherLoadBySimdIntTranspose(const·float·*base,·std::int32_t·offset,·float·*v0,·float·*v1,·float·*v2,·float·*v3)'], | 68 | ········['../namespacegmx.xhtml#a179f05bc9899fe2b7e71d53a1a95b629',·1,·'gmx::gatherLoadBySimdIntTranspose(const·float·*base,·std::int32_t·offset,·float·*v0,·float·*v1,·float·*v2,·float·*v3)'], |
| 69 | ········['../namespacegmx.xhtml#a0614e0463cccdf97cec36fffb2b24764',·1,·'gmx::gatherLoadBySimdIntTranspose(const·float·*base,·std::int32_t·offset,·float·*v0,·float·*v1)'], | 69 | ········['../namespacegmx.xhtml#a0614e0463cccdf97cec36fffb2b24764',·1,·'gmx::gatherLoadBySimdIntTranspose(const·float·*base,·std::int32_t·offset,·float·*v0,·float·*v1)'], |
| 70 | ········['../namespacegmx.xhtml#a92c67d959864d2549a679f0f2245bacb',·1,·'gmx::gatherLoadBySimdIntTranspose(const·double·*base,·std::int32_t·offset,·double·*v0,·double·*v1,·double·*v2,·double·*v3)'], | 70 | ········['../namespacegmx.xhtml#a92c67d959864d2549a679f0f2245bacb',·1,·'gmx::gatherLoadBySimdIntTranspose(const·double·*base,·std::int32_t·offset,·double·*v0,·double·*v1,·double·*v2,·double·*v3)'], |
| 71 | ········['../namespacegmx.xhtml#a6bb92443ba8da5d878c1dd85b2bcde8d',·1,·'gmx::gatherLoadBySimdIntTranspose(const·double·*base,·std::int32_t·offset,·double·*v0,·double·*v1)'] | 71 | ········['../namespacegmx.xhtml#a6bb92443ba8da5d878c1dd85b2bcde8d',·1,·'gmx::gatherLoadBySimdIntTranspose(const·double·*base,·std::int32_t·offset,·double·*v0,·double·*v1)'] |
| 72 | ····]], | 72 | ····]], |
| 73 | ····['gatherloadtranspose_45',·['gatherloadtranspose',·['../group__module__simd.xhtml#ga | 73 | ····['gatherloadtranspose_45',·['gatherloadtranspose',·['../group__module__simd.xhtml#gad1b51d9220213996033e5dce938c926f',·1,·'gmx::gatherLoadTranspose(const·double·*base,·const·std::int32_t·offset[],·SimdDouble·*v0,·SimdDouble·*v1)'], |
| 74 | ········['../group__module__simd.xhtml#ga725596b415f4bca94e71321b6845bed4',·1,·'gmx::gatherLoadTranspose(const·double·*base,·const·std::int32_t·offset[],·SimdDouble·*v0,·SimdDouble·*v1,·SimdDouble·*v2,·SimdDouble·*v3)'], | 74 | ········['../group__module__simd.xhtml#ga725596b415f4bca94e71321b6845bed4',·1,·'gmx::gatherLoadTranspose(const·double·*base,·const·std::int32_t·offset[],·SimdDouble·*v0,·SimdDouble·*v1,·SimdDouble·*v2,·SimdDouble·*v3)'], |
| 75 | ········['../group__module__simd.xhtml#ga | 75 | ········['../group__module__simd.xhtml#ga0f9f9c71226ae1d2f0065dd66e1027f0',·1,·'gmx::gatherLoadTranspose(const·float·*base,·const·std::int32_t·offset[],·SimdFloat·*v0,·SimdFloat·*v1,·SimdFloat·*v2,·SimdFloat·*v3)'], |
| 76 | ········['../group__module__simd.xhtml#ga6823a0b3cbc43eee3918b137d2b18384',·1,·'gmx::gatherLoadTranspose(const·float·*base,·const·std::int32_t·offset[],·SimdFloat·*v0,·SimdFloat·*v1)'], | 76 | ········['../group__module__simd.xhtml#ga6823a0b3cbc43eee3918b137d2b18384',·1,·'gmx::gatherLoadTranspose(const·float·*base,·const·std::int32_t·offset[],·SimdFloat·*v0,·SimdFloat·*v1)'], |
| 77 | ········['../namespacegmx.xhtml#aba7ff3639534a22d4b9c7a834d7584fd',·1,·'gmx::gatherLoadTranspose(const·float·*base,·const·std::int32_t·offset[],·float·*v0,·float·*v1,·float·*v2,·float·*v3)'], | 77 | ········['../namespacegmx.xhtml#aba7ff3639534a22d4b9c7a834d7584fd',·1,·'gmx::gatherLoadTranspose(const·float·*base,·const·std::int32_t·offset[],·float·*v0,·float·*v1,·float·*v2,·float·*v3)'], |
| 78 | ········['../namespacegmx.xhtml#a4c0cda66eba19ad12a50e48f848f268f',·1,·'gmx::gatherLoadTranspose(const·float·*base,·const·std::int32_t·offset[],·float·*v0,·float·*v1)'], | 78 | ········['../namespacegmx.xhtml#a4c0cda66eba19ad12a50e48f848f268f',·1,·'gmx::gatherLoadTranspose(const·float·*base,·const·std::int32_t·offset[],·float·*v0,·float·*v1)'], |
| 79 | ········['../namespacegmx.xhtml#a94e990607fd4d48ca160fbc380597f5a',·1,·'gmx::gatherLoadTranspose(const·double·*base,·const·std::int32_t·offset[],·double·*v0,·double·*v1,·double·*v2,·double·*v3)'], | 79 | ········['../namespacegmx.xhtml#a94e990607fd4d48ca160fbc380597f5a',·1,·'gmx::gatherLoadTranspose(const·double·*base,·const·std::int32_t·offset[],·double·*v0,·double·*v1,·double·*v2,·double·*v3)'], |
| 80 | ········['../namespacegmx.xhtml#a0c464ebd492587005bb4baefb4293072',·1,·'gmx::gatherLoadTranspose(const·double·*base,·const·std::int32_t·offset[],·double·*v0,·double·*v1)'] | 80 | ········['../namespacegmx.xhtml#a0c464ebd492587005bb4baefb4293072',·1,·'gmx::gatherLoadTranspose(const·double·*base,·const·std::int32_t·offset[],·double·*v0,·double·*v1)'] |
| 81 | ····]], | 81 | ····]], |
| 82 | ····['gatherloadtransposehsimd_46',·['gatherloadtransposehsimd',·['../group__module__simd.xhtml#gaf571e52121cd544effd263751636c974',·1,·'gmx::gatherLoadTransposeHsimd(const·double·*base0,·const·double·*base1,·const·std::int32_t·offset[],·SimdDouble·*v0,·SimdDouble·*v1)'], | 82 | ····['gatherloadtransposehsimd_46',·['gatherloadtransposehsimd',·['../group__module__simd.xhtml#gaf571e52121cd544effd263751636c974',·1,·'gmx::gatherLoadTransposeHsimd(const·double·*base0,·const·double·*base1,·const·std::int32_t·offset[],·SimdDouble·*v0,·SimdDouble·*v1)'], |
| 83 | ········['../group__module__simd.xhtml#ga11666cd65bdfee331799b2c1dc732c60',·1,·'gmx::gatherLoadTransposeHsimd(const·float·*base0,·const·float·*base1,·const·std::int32_t·offset[],·SimdFloat·*v0,·SimdFloat·*v1)'] | 83 | ········['../group__module__simd.xhtml#ga11666cd65bdfee331799b2c1dc732c60',·1,·'gmx::gatherLoadTransposeHsimd(const·float·*base0,·const·float·*base1,·const·std::int32_t·offset[],·SimdFloat·*v0,·SimdFloat·*v1)'] |
| 84 | ····]], | 84 | ····]], |
| 85 | ····['gatherloadubysimdinttranspose_47',·['gatherloadubysimdinttranspose',·['../ | 85 | ····['gatherloadubysimdinttranspose_47',·['gatherloadubysimdinttranspose',·['../group__module__simd.xhtml#ga4b26c79db832542ab73a692f7db941c2',·1,·'gmx::gatherLoadUBySimdIntTranspose(const·float·*base,·SimdFInt32·offset,·SimdFloat·*v0,·SimdFloat·*v1)'], |
| 86 | ········['../group__module__simd.xhtml#gad15c3a27898a9f9dbb2963dee1a7cacf',·1,·'gmx::gatherLoadUBySimdIntTranspose(const·double·*base,·SimdDInt32·offset,·SimdDouble·*v0,·SimdDouble·*v1)'], | 86 | ········['../group__module__simd.xhtml#gad15c3a27898a9f9dbb2963dee1a7cacf',·1,·'gmx::gatherLoadUBySimdIntTranspose(const·double·*base,·SimdDInt32·offset,·SimdDouble·*v0,·SimdDouble·*v1)'], |
| 87 | ········['../group__module__simd.xhtml#ga4b26c79db832542ab73a692f7db941c2',·1,·'gmx::gatherLoadUBySimdIntTranspose(const·float·*base,·SimdFInt32·offset,·SimdFloat·*v0,·SimdFloat·*v1)'], | ||
| 88 | ········['../namespacegmx.xhtml#a29c67b43b26cfba5ec360bf020df4c8a',·1,·'gmx::gatherLoadUBySimdIntTranspose(const·float·*base,·std::int32_t·offset,·float·*v0,·float·*v1)'] | 87 | ········['../namespacegmx.xhtml#a29c67b43b26cfba5ec360bf020df4c8a',·1,·'gmx::gatherLoadUBySimdIntTranspose(const·float·*base,·std::int32_t·offset,·float·*v0,·float·*v1)'], |
| 88 | ········['../namespacegmx.xhtml#af74c58ce1915c6a25061153cd3b4bde8',·1,·'gmx::gatherLoadUBySimdIntTranspose(const·double·*base,·std::int32_t·offset,·double·*v0,·double·*v1)'] | ||
| 89 | ····]], | 89 | ····]], |
| 90 | ····['gatherloadutranspose_48',·['gatherloadutranspose',·['../ | 90 | ····['gatherloadutranspose_48',·['gatherloadutranspose',·['../namespacegmx.xhtml#a0502844193d9fcf13648a4165a67a1a3',·1,·'gmx::gatherLoadUTranspose(const·double·*base,·const·std::int32_t·offset[],·double·*v0,·double·*v1,·double·*v2)'], |
| 91 | ········['../group__module__simd.xhtml#gaa5581add75787fa1304acdac5af0ad7d',·1,·'gmx::gatherLoadUTranspose(const·float·*base,·const·std::int32_t·offset[],·SimdFloat·*v0,·SimdFloat·*v1,·SimdFloat·*v2)'], | ||
| 92 | ········['../namespacegmx.xhtml#acfefc291c66a8404f2aad767af91cb21',·1,·'gmx::gatherLoadUTranspose(const·float·*base,·const·std::int32_t·offset[],·float·*v0,·float·*v1,·float·*v2)'], | 91 | ········['../namespacegmx.xhtml#acfefc291c66a8404f2aad767af91cb21',·1,·'gmx::gatherLoadUTranspose(const·float·*base,·const·std::int32_t·offset[],·float·*v0,·float·*v1,·float·*v2)'], |
| 93 | ········['../ | 92 | ········['../group__module__simd.xhtml#gaa5581add75787fa1304acdac5af0ad7d',·1,·'gmx::gatherLoadUTranspose(const·float·*base,·const·std::int32_t·offset[],·SimdFloat·*v0,·SimdFloat·*v1,·SimdFloat·*v2)'], |
| 93 | ········['../group__module__simd.xhtml#gaafc4e2f213c40bba66c83e6524445523',·1,·'gmx::gatherLoadUTranspose(const·double·*base,·const·std::int32_t·offset[],·SimdDouble·*v0,·SimdDouble·*v1,·SimdDouble·*v2)'] | ||
| 94 | ····]], | 94 | ····]], |
| 95 | ····['gathertest_49',·['GatherTest',·['../classgmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03_1_1GatherTest.xhtml',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}']]], | 95 | ····['gathertest_49',·['GatherTest',·['../classgmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03_1_1GatherTest.xhtml',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}']]], |
| 96 | ····['gathertestbody_50',·['gathertestbody',·['../classgmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03_1_1GatherTestBody.xhtml',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}::GatherTestBody'], | 96 | ····['gathertestbody_50',·['gathertestbody',·['../classgmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03_1_1GatherTestBody.xhtml',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}::GatherTestBody'], |
| 97 | ········['../classgmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03_1_1GatherTestBody.xhtml#aaa55fb4d0672671e335a3c17c1647494',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}::GatherTestBody::GatherTestBody()'] | 97 | ········['../classgmx_1_1test_1_1anonymous__namespace_02pmegathertest_8cpp_03_1_1GatherTestBody.xhtml#aaa55fb4d0672671e335a3c17c1647494',·1,·'gmx::test::anonymous_namespace{pmegathertest.cpp}::GatherTestBody::GatherTestBody()'] |
| 98 | ····]], | 98 | ····]], |
| 99 | ····['gatherunusedentries_51',·['gatherUnusedEntries',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata_8cpp_03.xhtml#ac879386ac1155f762b4b88ba2a2e529a',·1,·'gmx::test::anonymous_namespace{refdata.cpp}']]], | 99 | ····['gatherunusedentries_51',·['gatherUnusedEntries',·['../namespacegmx_1_1test_1_1anonymous__namespace_02refdata_8cpp_03.xhtml#ac879386ac1155f762b4b88ba2a2e529a',·1,·'gmx::test::anonymous_namespace{refdata.cpp}']]], |
| 100 | ····['gatherworkgroupsize_52',·['gatherWorkGroupSize',·['../structPmeGpuProgramImpl.xhtml#a4d0940f01c689f58f6a836319e0ecdf6',·1,·'PmeGpuProgramImpl']]], | 100 | ····['gatherworkgroupsize_52',·['gatherWorkGroupSize',·['../structPmeGpuProgramImpl.xhtml#a4d0940f01c689f58f6a836319e0ecdf6',·1,·'PmeGpuProgramImpl']]], |
| 101 | ····['gauss1d_5f_53',·['gauss1d_',·['../classgmx_1_1GaussTransform3D_1_1Impl.xhtml#a728c7adc2d3941d37833a368c751afee',·1,·'gmx::GaussTransform3D::Impl::gauss1d_'], | 101 | ····['gauss1d_5f_53',·['gauss1d_',·['../classgmx_1_1GaussTransform3D_1_1Impl.xhtml#a728c7adc2d3941d37833a368c751afee',·1,·'gmx::GaussTransform3D::Impl::gauss1d_'], |
| 102 | ········['../classgmx_1_1DensityFittingForce_1_1Impl.xhtml#aaca18108ef67ba8911fc95d61f6306f2',·1,·'gmx::DensityFittingForce::Impl::gauss1d_'] | 102 | ········['../classgmx_1_1DensityFittingForce_1_1Impl.xhtml#aaca18108ef67ba8911fc95d61f6306f2',·1,·'gmx::DensityFittingForce::Impl::gauss1d_'] |
| 103 | ····]], | 103 | ····]], |
| 104 | ····['gaussianon1dlattice_54',·['gaussianon1dlattice',·['../classgmx_1_1GaussianOn1DLattice.xhtml',·1,·'gmx::GaussianOn1DLattice'], | ||
| 105 | ····· | 104 | ····['gaussianon1dlattice_54',·['gaussianon1dlattice',·['../classgmx_1_1GaussianOn1DLattice.xhtml#af09f3b97db4e8868a08a0df75a1ba4e6',·1,·'gmx::GaussianOn1DLattice::GaussianOn1DLattice(GaussianOn1DLattice·&&other)·noexcept'], |
| 106 | ········['../classgmx_1_1GaussianOn1DLattice.xhtml#aec1491a190cf9652955a6d46bd303699',·1,·'gmx::GaussianOn1DLattice::GaussianOn1DLattice(const·GaussianOn1DLattice·&other)'], | 105 | ········['../classgmx_1_1GaussianOn1DLattice.xhtml#aec1491a190cf9652955a6d46bd303699',·1,·'gmx::GaussianOn1DLattice::GaussianOn1DLattice(const·GaussianOn1DLattice·&other)'], |
| 107 | ········['../classgmx_1_1GaussianOn1DLattice.xhtml#afeb725d6952b76a212df5461e1a257dd',·1,·'gmx::GaussianOn1DLattice::GaussianOn1DLattice(int·numGridPointsForSpreadingHalfWidth,·real·sigma)'] | 106 | ········['../classgmx_1_1GaussianOn1DLattice.xhtml#afeb725d6952b76a212df5461e1a257dd',·1,·'gmx::GaussianOn1DLattice::GaussianOn1DLattice(int·numGridPointsForSpreadingHalfWidth,·real·sigma)'], |
| 107 | ········['../classgmx_1_1GaussianOn1DLattice.xhtml',·1,·'gmx::GaussianOn1DLattice'] | ||
| 108 | ····]], | 108 | ····]], |
| 109 | ····['gaussianspreadkernelparameters_55',·['GaussianSpreadKernelParameters',·['../structgmx_1_1GaussianSpreadKernelParameters.xhtml',·1,·'gmx']]], | 109 | ····['gaussianspreadkernelparameters_55',·['GaussianSpreadKernelParameters',·['../structgmx_1_1GaussianSpreadKernelParameters.xhtml',·1,·'gmx']]], |
| 110 | ····['gaussiantransformspreadingrangeinmultiplesofwidth_5f_56',·['gaussianTransformSpreadingRangeInMultiplesOfWidth_',·['../structgmx_1_1DensityFittingParameters.xhtml#aa8ccc2a6b16cbba79f8efe4f19482a04',·1,·'gmx::DensityFittingParameters']]], | 110 | ····['gaussiantransformspreadingrangeinmultiplesofwidth_5f_56',·['gaussianTransformSpreadingRangeInMultiplesOfWidth_',·['../structgmx_1_1DensityFittingParameters.xhtml#aa8ccc2a6b16cbba79f8efe4f19482a04',·1,·'gmx::DensityFittingParameters']]], |
| 111 | ····['gaussiantransformspreadingwidth_5f_57',·['gaussianTransformSpreadingWidth_',·['../structgmx_1_1DensityFittingParameters.xhtml#a0d3e3cf451f5343422ad4f191b527ec0',·1,·'gmx::DensityFittingParameters']]], | 111 | ····['gaussiantransformspreadingwidth_5f_57',·['gaussianTransformSpreadingWidth_',·['../structgmx_1_1DensityFittingParameters.xhtml#a0d3e3cf451f5343422ad4f191b527ec0',·1,·'gmx::DensityFittingParameters']]], |
| 112 | ····['gausstransform_2ecpp_58',·['gausstransform.cpp',·['../ | 112 | ····['gausstransform_2ecpp_58',·['gausstransform.cpp',·['../gausstransform_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 113 | ········['../gausstransform_8cpp.xhtml',·1,·'(Global·Namespace)'] | 113 | ········['../tests_2gausstransform_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 114 | ····]], | 114 | ····]], |
| 115 | ····['gausstransform_2eh_59',·['gausstransform.h',·['../gausstransform_8h.xhtml',·1,·'']]], | 115 | ····['gausstransform_2eh_59',·['gausstransform.h',·['../gausstransform_8h.xhtml',·1,·'']]], |
| 116 | ····['gausstransform3d_60',·['gausstransform3d',·['../classgmx_1_1GaussTransform3D.xhtml',·1,·'gmx::GaussTransform3D'], | 116 | ····['gausstransform3d_60',·['gausstransform3d',·['../classgmx_1_1GaussTransform3D.xhtml',·1,·'gmx::GaussTransform3D'], |
| 117 | ········['../classgmx_1_1GaussTransform3D.xhtml#ac80b1a8a0699bc7726fac2e834c1efa1',·1,·'gmx::GaussTransform3D::GaussTransform3D(GaussTransform3D·&&other)·noexcept'], | 117 | ········['../classgmx_1_1GaussTransform3D.xhtml#ac80b1a8a0699bc7726fac2e834c1efa1',·1,·'gmx::GaussTransform3D::GaussTransform3D(GaussTransform3D·&&other)·noexcept'], |
| 118 | ········['../classgmx_1_1GaussTransform3D.xhtml#a4bebacbd34dce204e961a8ec72c90108',·1,·'gmx::GaussTransform3D::GaussTransform3D(const·GaussTransform3D·&other)'], | 118 | ········['../classgmx_1_1GaussTransform3D.xhtml#a4bebacbd34dce204e961a8ec72c90108',·1,·'gmx::GaussTransform3D::GaussTransform3D(const·GaussTransform3D·&other)'], |
| 119 | ········['../classgmx_1_1GaussTransform3D.xhtml#a927125c027d861b21174c07b0a22286a',·1,·'gmx::GaussTransform3D::GaussTransform3D(const·dynamicExtents3D·&extent,·const·GaussianSpreadKernelParameters::Shape·&globalParameters)'] | 119 | ········['../classgmx_1_1GaussTransform3D.xhtml#a927125c027d861b21174c07b0a22286a',·1,·'gmx::GaussTransform3D::GaussTransform3D(const·dynamicExtents3D·&extent,·const·GaussianSpreadKernelParameters::Shape·&globalParameters)'] |
| 120 | ····]], | 120 | ····]], |
| Offset 47, 16 lines modified | Offset 47, 16 lines modified | ||
| 47 | ····['hardware_20taskassignment_34',·['Assigning·simulation·tasks·to·hardware·(taskassignment)',·['../group__module__taskassignment.xhtml',·1,·'']]], | 47 | ····['hardware_20taskassignment_34',·['Assigning·simulation·tasks·to·hardware·(taskassignment)',·['../group__module__taskassignment.xhtml',·1,·'']]], |
| 48 | ····['hardwaredetectiontestparams_35',·['HardwareDetectionTestParams',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#a9f7fd9aa2aadb2fb12e381db86cf3753',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]], | 48 | ····['hardwaredetectiontestparams_35',·['HardwareDetectionTestParams',·['../namespacegmx_1_1test_1_1anonymous__namespace_02mockhardwaretopology_8cpp_03.xhtml#a9f7fd9aa2aadb2fb12e381db86cf3753',·1,·'gmx::test::anonymous_namespace{mockhardwaretopology.cpp}']]], |
| 49 | ····['hardwaretopology_36',·['hardwaretopology',·['../classgmx_1_1HardwareTopology.xhtml#a524b02638d5644ffc59a0576364bcfa7',·1,·'gmx::HardwareTopology::HardwareTopology()'], | 49 | ····['hardwaretopology_36',·['hardwaretopology',·['../classgmx_1_1HardwareTopology.xhtml#a524b02638d5644ffc59a0576364bcfa7',·1,·'gmx::HardwareTopology::HardwareTopology()'], |
| 50 | ········['../classgmx_1_1HardwareTopology.xhtml',·1,·'gmx::HardwareTopology'], | 50 | ········['../classgmx_1_1HardwareTopology.xhtml',·1,·'gmx::HardwareTopology'], |
| 51 | ········['../classgmx_1_1HardwareTopology.xhtml#aef31c2ebd09d5d67b1b981af385e0e62',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::map<·int,·std::array<·int,·3·>·>·&logicalProcessorIdMap,·const·std::string·&filesystemRoot)'], | 51 | ········['../classgmx_1_1HardwareTopology.xhtml#aef31c2ebd09d5d67b1b981af385e0e62',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::map<·int,·std::array<·int,·3·>·>·&logicalProcessorIdMap,·const·std::string·&filesystemRoot)'], |
| 52 | ········['../classgmx_1_1HardwareTopology.xhtml#a4d802133ee88be4fa18d0b76fdba0196',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::string·&filesystemRoot,·const·std::vector<·int·>·&allowedProcessors)'] | 52 | ········['../classgmx_1_1HardwareTopology.xhtml#a4d802133ee88be4fa18d0b76fdba0196',·1,·'gmx::HardwareTopology::HardwareTopology(const·std::string·&filesystemRoot,·const·std::vector<·int·>·&allowedProcessors)'] |
| 53 | ····]], | 53 | ····]], |
| 54 | ····['hardwaretopology_2ecpp_37',·['hardwaretopology.cpp',·['../hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)'], | 54 | ····['hardwaretopology_2ecpp_37',·['hardwaretopology.cpp',·['../tests_2hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 55 | ········['../ | 55 | ········['../hardwaretopology_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 56 | ····]], | 56 | ····]], |
| 57 | ····['hardwaretopology_2eh_38',·['hardwaretopology.h',·['../hardwaretopology_8h.xhtml',·1,·'']]], | 57 | ····['hardwaretopology_2eh_38',·['hardwaretopology.h',·['../hardwaretopology_8h.xhtml',·1,·'']]], |
| 58 | ····['hasall_39',·['hasAll',·['../structgmx_1_1SelectionTopologyProperties.xhtml#af8a7de4259caaa6fae5eb6e4fb12fbeb',·1,·'gmx::SelectionTopologyProperties']]], | 58 | ····['hasall_39',·['hasAll',·['../structgmx_1_1SelectionTopologyProperties.xhtml#af8a7de4259caaa6fae5eb6e4fb12fbeb',·1,·'gmx::SelectionTopologyProperties']]], |
| 59 | ····['hasany_40',·['hasAny',·['../structgmx_1_1SelectionTopologyProperties.xhtml#a8f3322ffdccb62ca531f8e9bf66cb4eb',·1,·'gmx::SelectionTopologyProperties']]], | 59 | ····['hasany_40',·['hasAny',·['../structgmx_1_1SelectionTopologyProperties.xhtml#a8f3322ffdccb62ca531f8e9bf66cb4eb',·1,·'gmx::SelectionTopologyProperties']]], |
| 60 | ····['hasbox_41',·['hasBox',·['../classgmx_1_1TrajectoryFrame.xhtml#a7460a889a7f6f45edb514dca72e984c7',·1,·'gmx::TrajectoryFrame']]], | 60 | ····['hasbox_41',·['hasBox',·['../classgmx_1_1TrajectoryFrame.xhtml#a7460a889a7f6f45edb514dca72e984c7',·1,·'gmx::TrajectoryFrame']]], |
| 61 | ····['hasbreaks_42',·['hasBreaks',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1SecondaryStructuresData.xhtml#a85b888a0425d0e7ea1a678bce38350a4',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::SecondaryStructuresData']]], | 61 | ····['hasbreaks_42',·['hasBreaks',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1SecondaryStructuresData.xhtml#a85b888a0425d0e7ea1a678bce38350a4',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::SecondaryStructuresData']]], |
| 62 | ····['hasbridges_43',·['hasBridges',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1SecondaryStructuresData.xhtml#a4bab808db0709f69205b569bcd4f3c6b',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::SecondaryStructuresData']]], | 62 | ····['hasbridges_43',·['hasBridges',·['../classgmx_1_1analysismodules_1_1anonymous__namespace_02dssp_8cpp_03_1_1SecondaryStructuresData.xhtml#a4bab808db0709f69205b569bcd4f3c6b',·1,·'gmx::analysismodules::anonymous_namespace{dssp.cpp}::SecondaryStructuresData']]], |
| Offset 321, 16 lines modified | Offset 321, 16 lines modified | ||
| 321 | ····['localatomset_218',·['localatomset',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()'], | 321 | ····['localatomset_218',·['localatomset',·['../classgmx_1_1anonymous__namespace_02densityfitting_8cpp_03_1_1DensityFittingSimulationParameterSetup.xhtml#a188c5386f2eb694db6cedf88359fa41d',·1,·'gmx::anonymous_namespace{densityfitting.cpp}::DensityFittingSimulationParameterSetup::localAtomSet()'], |
| 322 | ········['../classgmx_1_1LocalAtomSet.xhtml',·1,·'gmx::LocalAtomSet'] | 322 | ········['../classgmx_1_1LocalAtomSet.xhtml',·1,·'gmx::LocalAtomSet'] |
| 323 | ····]], | 323 | ····]], |
| 324 | ····['localatomset_2ecpp_219',·['localatomset.cpp',·['../localatomset_8cpp.xhtml',·1,·'']]], | 324 | ····['localatomset_2ecpp_219',·['localatomset.cpp',·['../localatomset_8cpp.xhtml',·1,·'']]], |
| 325 | ····['localatomset_2eh_220',·['localatomset.h',·['../localatomset_8h.xhtml',·1,·'']]], | 325 | ····['localatomset_2eh_220',·['localatomset.h',·['../localatomset_8h.xhtml',·1,·'']]], |
| 326 | ····['localatomsetdata_2ecpp_221',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]], | 326 | ····['localatomsetdata_2ecpp_221',·['localatomsetdata.cpp',·['../localatomsetdata_8cpp.xhtml',·1,·'']]], |
| 327 | ····['localatomsetdata_2eh_222',·['localatomsetdata.h',·['../localatomsetdata_8h.xhtml',·1,·'']]], | 327 | ····['localatomsetdata_2eh_222',·['localatomsetdata.h',·['../localatomsetdata_8h.xhtml',·1,·'']]], |
| 328 | ····['localatomsetmanager_223',·['localatomsetmanager',·['../classgmx_1_1LocalAtomSetManager.xhtml',·1,·'gmx::LocalAtomSetManager'], | ||
| 328 | ···· | 329 | ········['../classgmx_1_1ColvarsSimulationsParameters.xhtml#a34afd04735705f6200b8ae831dd1d458',·1,·'gmx::ColvarsSimulationsParameters::localAtomSetManager()'] |
| 329 | ········['../classgmx_1_1LocalAtomSetManager.xhtml',·1,·'gmx::LocalAtomSetManager'] | ||
| 330 | ····]], | 330 | ····]], |
| 331 | ····['localatomsetmanager_2ecpp_224',·['localatomsetmanager.cpp',·['../tests_2localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)'], | 331 | ····['localatomsetmanager_2ecpp_224',·['localatomsetmanager.cpp',·['../tests_2localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 332 | ········['../localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)'] | 332 | ········['../localatomsetmanager_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 333 | ····]], | 333 | ····]], |
| 334 | ····['localatomsetmanager_2eh_225',·['localatomsetmanager.h',·['../localatomsetmanager_8h.xhtml',·1,·'']]], | 334 | ····['localatomsetmanager_2eh_225',·['localatomsetmanager.h',·['../localatomsetmanager_8h.xhtml',·1,·'']]], |
| 335 | ····['localcomplexgridsize_226',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]], | 335 | ····['localcomplexgridsize_226',·['localComplexGridSize',·['../structPmeGpuGridParams.xhtml#aa89412c89b24d489e7b1e2a7429372ee',·1,·'PmeGpuGridParams']]], |
| 336 | ····['localcomplexgridsizepadded_227',·['localComplexGridSizePadded',·['../structPmeGpuGridParams.xhtml#a94db264056f3f813dd3c2400f2a01583',·1,·'PmeGpuGridParams']]], | 336 | ····['localcomplexgridsizepadded_227',·['localComplexGridSizePadded',·['../structPmeGpuGridParams.xhtml#a94db264056f3f813dd3c2400f2a01583',·1,·'PmeGpuGridParams']]], |
| Offset 5, 22 lines modified | Offset 5, 22 lines modified | ||
| 5 | ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]], | 5 | ····['abstractoption_2eh_3',·['abstractoption.h',·['../abstractoption_8h.xhtml',·1,·'']]], |
| 6 | ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]], | 6 | ····['abstractoptionstorage_2ecpp_4',·['abstractoptionstorage.cpp',·['../abstractoptionstorage_8cpp.xhtml',·1,·'']]], |
| 7 | ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]], | 7 | ····['abstractoptionstorage_2eh_5',·['abstractoptionstorage.h',·['../abstractoptionstorage_8h.xhtml',·1,·'']]], |
| 8 | ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]], | 8 | ····['abstractsection_2ecpp_6',·['abstractsection.cpp',·['../abstractsection_8cpp.xhtml',·1,·'']]], |
| 9 | ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]], | 9 | ····['abstractsection_2eh_7',·['abstractsection.h',·['../abstractsection_8h.xhtml',·1,·'']]], |
| 10 | ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]], | 10 | ····['accessor_5fpolicy_2ecpp_8',·['accessor_policy.cpp',·['../accessor__policy_8cpp.xhtml',·1,·'']]], |
| 11 | ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]], | 11 | ····['accessor_5fpolicy_2eh_9',·['accessor_policy.h',·['../accessor__policy_8h.xhtml',·1,·'']]], |
| 12 | ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'], | 12 | ····['alignedallocator_2ecpp_10',·['alignedallocator.cpp',·['../tests_2alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 13 | ········['../ | 13 | ········['../alignedallocator_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 14 | ····]], | 14 | ····]], |
| 15 | ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]], | 15 | ····['alignedallocator_2eh_11',·['alignedallocator.h',·['../alignedallocator_8h.xhtml',·1,·'']]], |
| 16 | ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]], | 16 | ····['alignedallocator_5fimpl_2eh_12',·['alignedallocator_impl.h',·['../alignedallocator__impl_8h.xhtml',·1,·'']]], |
| 17 | ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]], | 17 | ····['allocator_2eh_13',·['allocator.h',·['../allocator_8h.xhtml',·1,·'']]], |
| 18 | ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../ | 18 | ····['analysisdata_2ecpp_14',·['analysisdata.cpp',·['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 19 | ········['../analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'] | 19 | ········['../tests_2analysisdata_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 20 | ····]], | 20 | ····]], |
| 21 | ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]], | 21 | ····['analysisdata_2eh_15',·['analysisdata.h',·['../analysisdata_8h.xhtml',·1,·'']]], |
| 22 | ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]], | 22 | ····['analysismodule_2ecpp_16',·['analysismodule.cpp',·['../analysismodule_8cpp.xhtml',·1,·'']]], |
| 23 | ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'], | 23 | ····['analysismodule_2eh_17',·['analysismodule.h',·['../api_2legacy_2include_2gromacs_2trajectoryanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'], |
| 24 | ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'] | 24 | ········['../src_2gromacs_2energyanalysis_2analysismodule_8h.xhtml',·1,·'(Global·Namespace)'] |
| 25 | ····]], | 25 | ····]], |
| 26 | ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]], | 26 | ····['analysissettings_2ecpp_18',·['analysissettings.cpp',·['../analysissettings_8cpp.xhtml',·1,·'']]], |
| Offset 38, 16 lines modified | Offset 38, 16 lines modified | ||
| 38 | ········['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)'] | 38 | ········['../tests_2booltype_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 39 | ····]], | 39 | ····]], |
| 40 | ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]], | 40 | ····['booltype_2eh_32',·['booltype.h',·['../booltype_8h.xhtml',·1,·'']]], |
| 41 | ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]], | 41 | ····['bootstrap_5floadstore_2ecpp_33',·['bootstrap_loadstore.cpp',·['../bootstrap__loadstore_8cpp.xhtml',·1,·'']]], |
| 42 | ····['boundingboxes_2eh_34',·['boundingboxes.h',·['../boundingboxes_8h.xhtml',·1,·'']]], | 42 | ····['boundingboxes_2eh_34',·['boundingboxes.h',·['../boundingboxes_8h.xhtml',·1,·'']]], |
| 43 | ····['box_2ecpp_35',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]], | 43 | ····['box_2ecpp_35',·['box.cpp',·['../box_8cpp.xhtml',·1,·'']]], |
| 44 | ····['box_2eh_36',·['box.h',·['../box_8h.xhtml',·1,·'']]], | 44 | ····['box_2eh_36',·['box.h',·['../box_8h.xhtml',·1,·'']]], |
| 45 | ····['boxdeformation_2ecpp_37',·['boxdeformation.cpp',·['../ | 45 | ····['boxdeformation_2ecpp_37',·['boxdeformation.cpp',·['../programs_2mdrun_2tests_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 46 | ········['../ | 46 | ········['../gromacs_2mdlib_2boxdeformation_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 47 | ····]], | 47 | ····]], |
| 48 | ····['boxdeformation_2eh_38',·['boxdeformation.h',·['../boxdeformation_8h.xhtml',·1,·'']]], | 48 | ····['boxdeformation_2eh_38',·['boxdeformation.h',·['../boxdeformation_8h.xhtml',·1,·'']]], |
| 49 | ····['boxmatrix_2ecpp_39',·['boxmatrix.cpp',·['../boxmatrix_8cpp.xhtml',·1,·'']]], | 49 | ····['boxmatrix_2ecpp_39',·['boxmatrix.cpp',·['../boxmatrix_8cpp.xhtml',·1,·'']]], |
| 50 | ····['boxmatrix_2eh_40',·['boxmatrix.h',·['../boxmatrix_8h.xhtml',·1,·'']]], | 50 | ····['boxmatrix_2eh_40',·['boxmatrix.h',·['../boxmatrix_8h.xhtml',·1,·'']]], |
| 51 | ····['boxutilities_2ecpp_41',·['boxutilities.cpp',·['../boxutilities_8cpp.xhtml',·1,·'']]], | 51 | ····['boxutilities_2ecpp_41',·['boxutilities.cpp',·['../boxutilities_8cpp.xhtml',·1,·'']]], |
| 52 | ····['broadcaststructs_2eh_42',·['broadcaststructs.h',·['../broadcaststructs_8h.xhtml',·1,·'']]], | 52 | ····['broadcaststructs_2eh_42',·['broadcaststructs.h',·['../broadcaststructs_8h.xhtml',·1,·'']]], |
| 53 | ····['builder_2ecpp_43',·['builder.cpp',·['../builder_8cpp.xhtml',·1,·'']]], | 53 | ····['builder_2ecpp_43',·['builder.cpp',·['../builder_8cpp.xhtml',·1,·'']]], |
| Offset 15, 30 lines modified | Offset 15, 30 lines modified | ||
| 15 | ····['refdata_5fcheckers_2eh_11',·['refdata_checkers.h',·['../refdata__checkers_8h.xhtml',·1,·'']]], | 15 | ····['refdata_5fcheckers_2eh_11',·['refdata_checkers.h',·['../refdata__checkers_8h.xhtml',·1,·'']]], |
| 16 | ····['refdata_5fimpl_2eh_12',·['refdata_impl.h',·['../refdata__impl_8h.xhtml',·1,·'']]], | 16 | ····['refdata_5fimpl_2eh_12',·['refdata_impl.h',·['../refdata__impl_8h.xhtml',·1,·'']]], |
| 17 | ····['refdata_5ftests_2ecpp_13',·['refdata_tests.cpp',·['../refdata__tests_8cpp.xhtml',·1,·'']]], | 17 | ····['refdata_5ftests_2ecpp_13',·['refdata_tests.cpp',·['../refdata__tests_8cpp.xhtml',·1,·'']]], |
| 18 | ····['refdata_5fxml_2ecpp_14',·['refdata_xml.cpp',·['../refdata__xml_8cpp.xhtml',·1,·'']]], | 18 | ····['refdata_5fxml_2ecpp_14',·['refdata_xml.cpp',·['../refdata__xml_8cpp.xhtml',·1,·'']]], |
| 19 | ····['refdata_5fxml_2eh_15',·['refdata_xml.h',·['../refdata__xml_8h.xhtml',·1,·'']]], | 19 | ····['refdata_5fxml_2eh_15',·['refdata_xml.h',·['../refdata__xml_8h.xhtml',·1,·'']]], |
| 20 | ····['referencetemperaturemanager_2ecpp_16',·['referencetemperaturemanager.cpp',·['../referencetemperaturemanager_8cpp.xhtml',·1,·'']]], | 20 | ····['referencetemperaturemanager_2ecpp_16',·['referencetemperaturemanager.cpp',·['../referencetemperaturemanager_8cpp.xhtml',·1,·'']]], |
| 21 | ····['referencetemperaturemanager_2eh_17',·['referencetemperaturemanager.h',·['../referencetemperaturemanager_8h.xhtml',·1,·'']]], | 21 | ····['referencetemperaturemanager_2eh_17',·['referencetemperaturemanager.h',·['../referencetemperaturemanager_8h.xhtml',·1,·'']]], |
| 22 | ····['register_2ecpp_18',·['register.cpp',·['../ | 22 | ····['register_2ecpp_18',·['register.cpp',·['../tests_2register_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 23 | ········['../ | 23 | ········['../frameconverters_2register_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 24 | ····]], | 24 | ····]], |
| 25 | ····['register_2eh_19',·['register.h',·['../register_8h.xhtml',·1,·'']]], | 25 | ····['register_2eh_19',·['register.h',·['../register_8h.xhtml',·1,·'']]], |
| 26 | ····['repeatingsection_2ecpp_20',·['repeatingsection.cpp',·['../repeatingsection_8cpp.xhtml',·1,·'']]], | 26 | ····['repeatingsection_2ecpp_20',·['repeatingsection.cpp',·['../repeatingsection_8cpp.xhtml',·1,·'']]], |
| 27 | ····['repeatingsection_2eh_21',·['repeatingsection.h',·['../repeatingsection_8h.xhtml',·1,·'']]], | 27 | ····['repeatingsection_2eh_21',·['repeatingsection.h',·['../repeatingsection_8h.xhtml',·1,·'']]], |
| 28 | ····['replicaexchange_2ecpp_22',·['replicaexchange.cpp',·['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'], | 28 | ····['replicaexchange_2ecpp_22',·['replicaexchange.cpp',·['../gromacs_2mdrun_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 29 | ········['../programs_2mdrun_2tests_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'] | 29 | ········['../programs_2mdrun_2tests_2replicaexchange_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 30 | ····]], | 30 | ····]], |
| 31 | ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]], | 31 | ····['replicaexchange_2eh_23',·['replicaexchange.h',·['../replicaexchange_8h.xhtml',·1,·'']]], |
| 32 | ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]], | 32 | ····['replicaexchange_5fequivalence_2ecpp_24',·['replicaexchange_equivalence.cpp',·['../replicaexchange__equivalence_8cpp.xhtml',·1,·'']]], |
| 33 | ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]], | 33 | ····['report_5fmethods_2ecpp_25',·['report_methods.cpp',·['../tests_2report__methods_8cpp.xhtml',·1,·'']]], |
| 34 | ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]], | 34 | ····['reportgpuusage_2ecpp_26',·['reportgpuusage.cpp',·['../reportgpuusage_8cpp.xhtml',·1,·'']]], |
| 35 | ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]], | 35 | ····['reportgpuusage_2eh_27',·['reportgpuusage.h',·['../reportgpuusage_8h.xhtml',·1,·'']]], |
| 36 | ····['requirements_2ecpp_28',·['requirements.cpp',·['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)'], | 36 | ····['requirements_2ecpp_28',·['requirements.cpp',·['../tests_2requirements_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 37 | ········['../ | 37 | ········['../requirements_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 38 | ····]], | 38 | ····]], |
| 39 | ····['requirements_2eh_29',·['requirements.h',·['../requirements_8h.xhtml',·1,·'(Global·Namespace)'], | 39 | ····['requirements_2eh_29',·['requirements.h',·['../requirements_8h.xhtml',·1,·'(Global·Namespace)'], |
| 40 | ········['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)'] | 40 | ········['../tests_2requirements_8h.xhtml',·1,·'(Global·Namespace)'] |
| 41 | ····]], | 41 | ····]], |
| 42 | ····['rerun_2ecpp_30',·['rerun.cpp',·['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'], | 42 | ····['rerun_2ecpp_30',·['rerun.cpp',·['../gromacs_2mdrun_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 43 | ········['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'] | 43 | ········['../programs_2mdrun_2tests_2rerun_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 44 | ····]], | 44 | ····]], |
| Offset 62, 16 lines modified | Offset 62, 16 lines modified | ||
| 62 | ····['setbothtime_2ecpp_48',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]], | 62 | ····['setbothtime_2ecpp_48',·['setbothtime.cpp',·['../setbothtime_8cpp.xhtml',·1,·'']]], |
| 63 | ····['setbox_2eh_49',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]], | 63 | ····['setbox_2eh_49',·['setbox.h',·['../setbox_8h.xhtml',·1,·'']]], |
| 64 | ····['setenv_2eh_50',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]], | 64 | ····['setenv_2eh_50',·['setenv.h',·['../setenv_8h.xhtml',·1,·'']]], |
| 65 | ····['setforces_2ecpp_51',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]], | 65 | ····['setforces_2ecpp_51',·['setforces.cpp',·['../setforces_8cpp.xhtml',·1,·'']]], |
| 66 | ····['setforces_2eh_52',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]], | 66 | ····['setforces_2eh_52',·['setforces.h',·['../setforces_8h.xhtml',·1,·'']]], |
| 67 | ····['setprecision_2ecpp_53',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]], | 67 | ····['setprecision_2ecpp_53',·['setprecision.cpp',·['../setprecision_8cpp.xhtml',·1,·'']]], |
| 68 | ····['setprecision_2eh_54',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]], | 68 | ····['setprecision_2eh_54',·['setprecision.h',·['../setprecision_8h.xhtml',·1,·'']]], |
| 69 | ····['setstarttime_2ecpp_55',·['setstarttime.cpp',·['../t | 69 | ····['setstarttime_2ecpp_55',·['setstarttime.cpp',·['../outputadapters_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 70 | ········['../ | 70 | ········['../tests_2setstarttime_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 71 | ····]], | 71 | ····]], |
| 72 | ····['setstarttime_2eh_56',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]], | 72 | ····['setstarttime_2eh_56',·['setstarttime.h',·['../setstarttime_8h.xhtml',·1,·'']]], |
| 73 | ····['settimestep_2ecpp_57',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'], | 73 | ····['settimestep_2ecpp_57',·['settimestep.cpp',·['../outputadapters_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 74 | ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'] | 74 | ········['../tests_2settimestep_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 75 | ····]], | 75 | ····]], |
| 76 | ····['settimestep_2eh_58',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]], | 76 | ····['settimestep_2eh_58',·['settimestep.h',·['../settimestep_8h.xhtml',·1,·'']]], |
| 77 | ····['settle_2ecpp_59',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'], | 77 | ····['settle_2ecpp_59',·['settle.cpp',·['../tests_2settle_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| Offset 20, 12 lines modified | Offset 20, 12 lines modified | ||
| 20 | ········['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)'] | 20 | ········['../usergpuids_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 21 | ····]], | 21 | ····]], |
| 22 | ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]], | 22 | ····['usergpuids_2eh_18',·['usergpuids.h',·['../usergpuids_8h.xhtml',·1,·'']]], |
| 23 | ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'], | 23 | ····['utilities_2eh_19',·['utilities.h',·['../src_2gromacs_2mimic_2utilities_8h.xhtml',·1,·'(Global·Namespace)'], |
| 24 | ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)'] | 24 | ········['../src_2gromacs_2listed__forces_2utilities_8h.xhtml',·1,·'(Global·Namespace)'] |
| 25 | ····]], | 25 | ····]], |
| 26 | ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]], | 26 | ····['utility_2ecpp_20',·['utility.cpp',·['../utility_8cpp.xhtml',·1,·'']]], |
| 27 | ····['utility_2eh_21',·['utility.h',·['../ | 27 | ····['utility_2eh_21',·['utility.h',·['../utility_8h.xhtml',·1,·'(Global·Namespace)'], |
| 28 | ········['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)'], | 28 | ········['../domdec_2utility_8h.xhtml',·1,·'(Global·Namespace)'], |
| 29 | ········['../utility_8h.xhtml',·1,·'(Global·Namespace)'] | 29 | ········['../compat_2utility_8h.xhtml',·1,·'(Global·Namespace)'] |
| 30 | ····]] | 30 | ····]] |
| 31 | ]; | 31 | ]; |
| Offset 47, 16 lines modified | Offset 47, 16 lines modified | ||
| 47 | ········['../tests_2cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)'] | 47 | ········['../tests_2cmdlineparser_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 48 | ····]], | 48 | ····]], |
| 49 | ····['cmdlineparser_2eh_35',·['cmdlineparser.h',·['../cmdlineparser_8h.xhtml',·1,·'']]], | 49 | ····['cmdlineparser_2eh_35',·['cmdlineparser.h',·['../cmdlineparser_8h.xhtml',·1,·'']]], |
| 50 | ····['cmdlineprogramcontext_2ecpp_36',·['cmdlineprogramcontext.cpp',·['../cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'], | 50 | ····['cmdlineprogramcontext_2ecpp_36',·['cmdlineprogramcontext.cpp',·['../cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 51 | ········['../tests_2cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'] | 51 | ········['../tests_2cmdlineprogramcontext_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 52 | ····]], | 52 | ····]], |
| 53 | ····['cmdlineprogramcontext_2eh_37',·['cmdlineprogramcontext.h',·['../cmdlineprogramcontext_8h.xhtml',·1,·'']]], | 53 | ····['cmdlineprogramcontext_2eh_37',·['cmdlineprogramcontext.h',·['../cmdlineprogramcontext_8h.xhtml',·1,·'']]], |
| 54 | ····['cmdlinerunner_2ecpp_38',·['cmdlinerunner.cpp',·['../cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'], | 54 | ····['cmdlinerunner_2ecpp_38',·['cmdlinerunner.cpp',·['../tests_2cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 55 | ········['../ | 55 | ········['../cmdlinerunner_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 56 | ····]], | 56 | ····]], |
| 57 | ····['cmdlinerunner_2eh_39',·['cmdlinerunner.h',·['../cmdlinerunner_8h.xhtml',·1,·'']]], | 57 | ····['cmdlinerunner_2eh_39',·['cmdlinerunner.h',·['../cmdlinerunner_8h.xhtml',·1,·'']]], |
| 58 | ····['cmdlinetest_2ecpp_40',·['cmdlinetest.cpp',·['../cmdlinetest_8cpp.xhtml',·1,·'']]], | 58 | ····['cmdlinetest_2ecpp_40',·['cmdlinetest.cpp',·['../cmdlinetest_8cpp.xhtml',·1,·'']]], |
| 59 | ····['cmdlinetest_2eh_41',·['cmdlinetest.h',·['../cmdlinetest_8h.xhtml',·1,·'']]], | 59 | ····['cmdlinetest_2eh_41',·['cmdlinetest.h',·['../cmdlinetest_8h.xhtml',·1,·'']]], |
| 60 | ····['collect_2eh_42',·['collect.h',·['../collect_8h.xhtml',·1,·'']]], | 60 | ····['collect_2eh_42',·['collect.h',·['../collect_8h.xhtml',·1,·'']]], |
| 61 | ····['colvarproxy_5fgromacs_5fversion_2eh_43',·['colvarproxy_gromacs_version.h',·['../colvarproxy__gromacs__version_8h.xhtml',·1,·'']]], | 61 | ····['colvarproxy_5fgromacs_5fversion_2eh_43',·['colvarproxy_gromacs_version.h',·['../colvarproxy__gromacs__version_8h.xhtml',·1,·'']]], |
| 62 | ····['colvarproxygromacs_2ecpp_44',·['colvarproxygromacs.cpp',·['../colvarproxygromacs_8cpp.xhtml',·1,·'']]], | 62 | ····['colvarproxygromacs_2ecpp_44',·['colvarproxygromacs.cpp',·['../colvarproxygromacs_8cpp.xhtml',·1,·'']]], |
| Offset 23, 29 lines modified | Offset 23, 29 lines modified | ||
| 23 | ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'], | 23 | ····['densityfit_2ecpp_21',·['densityfit.cpp',·['../densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 24 | ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'] | 24 | ········['../tests_2densityfit_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 25 | ····]], | 25 | ····]], |
| 26 | ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]], | 26 | ····['densityfit_2eh_22',·['densityfit.h',·['../densityfit_8h.xhtml',·1,·'']]], |
| 27 | ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'], | 27 | ····['densityfitting_2ecpp_23',·['densityfitting.cpp',·['../densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 28 | ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'] | 28 | ········['../tests_2densityfitting_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 29 | ····]], | 29 | ····]], |
| 30 | ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'], | 30 | ····['densityfittingamplitudelookup_2ecpp_24',·['densityfittingamplitudelookup.cpp',·['../tests_2densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 31 | ········['../ | 31 | ········['../densityfittingamplitudelookup_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 32 | ····]], | 32 | ····]], |
| 33 | ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]], | 33 | ····['densityfittingamplitudelookup_2eh_25',·['densityfittingamplitudelookup.h',·['../densityfittingamplitudelookup_8h.xhtml',·1,·'']]], |
| 34 | ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../ | 34 | ····['densityfittingforce_2ecpp_26',·['densityfittingforce.cpp',·['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 35 | ········['../densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'] | 35 | ········['../tests_2densityfittingforce_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 36 | ····]], | 36 | ····]], |
| 37 | ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]], | 37 | ····['densityfittingforce_2eh_27',·['densityfittingforce.h',·['../densityfittingforce_8h.xhtml',·1,·'']]], |
| 38 | ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'], | 38 | ····['densityfittingforceprovider_2ecpp_28',·['densityfittingforceprovider.cpp',·['../tests_2densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 39 | ········['../ | 39 | ········['../densityfittingforceprovider_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 40 | ····]], | 40 | ····]], |
| 41 | ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]], | 41 | ····['densityfittingforceprovider_2eh_29',·['densityfittingforceprovider.h',·['../densityfittingforceprovider_8h.xhtml',·1,·'']]], |
| 42 | ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]], | 42 | ····['densityfittingmodule_2ecpp_30',·['densityfittingmodule.cpp',·['../densityfittingmodule_8cpp.xhtml',·1,·'']]], |
| 43 | ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../ | 43 | ····['densityfittingoptions_2ecpp_31',·['densityfittingoptions.cpp',·['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 44 | ········['../densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'] | 44 | ········['../tests_2densityfittingoptions_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 45 | ····]], | 45 | ····]], |
| 46 | ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]], | 46 | ····['densityfittingoptions_2eh_32',·['densityfittingoptions.h',·['../densityfittingoptions_8h.xhtml',·1,·'']]], |
| 47 | ····['densityfittingoutputprovider_2ecpp_33',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]], | 47 | ····['densityfittingoutputprovider_2ecpp_33',·['densityfittingoutputprovider.cpp',·['../densityfittingoutputprovider_8cpp.xhtml',·1,·'']]], |
| 48 | ····['densityfittingoutputprovider_2eh_34',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]], | 48 | ····['densityfittingoutputprovider_2eh_34',·['densityfittingoutputprovider.h',·['../densityfittingoutputprovider_8h.xhtml',·1,·'']]], |
| 49 | ····['densityfittingparameters_2eh_35',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]], | 49 | ····['densityfittingparameters_2eh_35',·['densityfittingparameters.h',·['../densityfittingparameters_8h.xhtml',·1,·'']]], |
| 50 | ····['device_5favailability_2ecpp_36',·['device_availability.cpp',·['../device__availability_8cpp.xhtml',·1,·'']]], | 50 | ····['device_5favailability_2ecpp_36',·['device_availability.cpp',·['../device__availability_8cpp.xhtml',·1,·'']]], |
| 51 | ····['device_5fbuffer_2ecpp_37',·['device_buffer.cpp',·['../device__buffer_8cpp.xhtml',·1,·'']]], | 51 | ····['device_5fbuffer_2ecpp_37',·['device_buffer.cpp',·['../device__buffer_8cpp.xhtml',·1,·'']]], |
| Offset 19, 16 lines modified | Offset 19, 16 lines modified | ||
| 19 | ····['helpformat_2eh_11',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]], | 19 | ····['helpformat_2eh_11',·['helpformat.h',·['../helpformat_8h.xhtml',·1,·'']]], |
| 20 | ····['helpmanager_2ecpp_12',·['helpmanager.cpp',·['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'], | 20 | ····['helpmanager_2ecpp_12',·['helpmanager.cpp',·['../helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 21 | ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'] | 21 | ········['../tests_2helpmanager_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 22 | ····]], | 22 | ····]], |
| 23 | ····['helpmanager_2eh_13',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]], | 23 | ····['helpmanager_2eh_13',·['helpmanager.h',·['../helpmanager_8h.xhtml',·1,·'']]], |
| 24 | ····['helptopic_2ecpp_14',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]], | 24 | ····['helptopic_2ecpp_14',·['helptopic.cpp',·['../helptopic_8cpp.xhtml',·1,·'']]], |
| 25 | ····['helptopic_2eh_15',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]], | 25 | ····['helptopic_2eh_15',·['helptopic.h',·['../helptopic_8h.xhtml',·1,·'']]], |
| 26 | ····['helpwritercontext_2ecpp_16',·['helpwritercontext.cpp',·['../ | 26 | ····['helpwritercontext_2ecpp_16',·['helpwritercontext.cpp',·['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 27 | ········['../helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'] | 27 | ········['../tests_2helpwritercontext_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 28 | ····]], | 28 | ····]], |
| 29 | ····['helpwritercontext_2eh_17',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]], | 29 | ····['helpwritercontext_2eh_17',·['helpwritercontext.h',·['../helpwritercontext_8h.xhtml',·1,·'']]], |
| 30 | ····['helpwriting_2ecpp_18',·['helpwriting.cpp',·['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'], | 30 | ····['helpwriting_2ecpp_18',·['helpwriting.cpp',·['../gromacs_2tools_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 31 | ········['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'] | 31 | ········['../programs_2mdrun_2tests_2helpwriting_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 32 | ····]], | 32 | ····]], |
| 33 | ····['histogram_2ecpp_19',·['histogram.cpp',·['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'], | 33 | ····['histogram_2ecpp_19',·['histogram.cpp',·['../tests_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 34 | ········['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'] | 34 | ········['../modules_2histogram_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| Offset 29, 27 lines modified | Offset 29, 27 lines modified | ||
| 29 | ····['parrinellorahmanbarostat_2ecpp_23',·['parrinellorahmanbarostat.cpp',·['../parrinellorahmanbarostat_8cpp.xhtml',·1,·'']]], | 29 | ····['parrinellorahmanbarostat_2ecpp_23',·['parrinellorahmanbarostat.cpp',·['../parrinellorahmanbarostat_8cpp.xhtml',·1,·'']]], |
| 30 | ····['parrinellorahmanbarostat_2eh_24',·['parrinellorahmanbarostat.h',·['../parrinellorahmanbarostat_8h.xhtml',·1,·'']]], | 30 | ····['parrinellorahmanbarostat_2eh_24',·['parrinellorahmanbarostat.h',·['../parrinellorahmanbarostat_8h.xhtml',·1,·'']]], |
| 31 | ····['parser_5finternal_2eh_25',·['parser_internal.h',·['../parser__internal_8h.xhtml',·1,·'']]], | 31 | ····['parser_5finternal_2eh_25',·['parser_internal.h',·['../parser__internal_8h.xhtml',·1,·'']]], |
| 32 | ····['parsetree_2ecpp_26',·['parsetree.cpp',·['../parsetree_8cpp.xhtml',·1,·'']]], | 32 | ····['parsetree_2ecpp_26',·['parsetree.cpp',·['../parsetree_8cpp.xhtml',·1,·'']]], |
| 33 | ····['parsetree_2eh_27',·['parsetree.h',·['../parsetree_8h.xhtml',·1,·'']]], | 33 | ····['parsetree_2eh_27',·['parsetree.h',·['../parsetree_8h.xhtml',·1,·'']]], |
| 34 | ····['partition_2ecpp_28',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]], | 34 | ····['partition_2ecpp_28',·['partition.cpp',·['../partition_8cpp.xhtml',·1,·'']]], |
| 35 | ····['partition_2eh_29',·['partition.h',·['../partition_8h.xhtml',·1,·'']]], | 35 | ····['partition_2eh_29',·['partition.h',·['../partition_8h.xhtml',·1,·'']]], |
| 36 | ····['path_2ecpp_30',·['path.cpp',·['../ | 36 | ····['path_2ecpp_30',·['path.cpp',·['../path_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 37 | ········['../path_8cpp.xhtml',·1,·'(Global·Namespace)'] | 37 | ········['../tests_2path_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 38 | ····]], | 38 | ····]], |
| 39 | ····['path_2eh_31',·['path.h',·['../path_8h.xhtml',·1,·'']]], | 39 | ····['path_2eh_31',·['path.h',·['../path_8h.xhtml',·1,·'']]], |
| 40 | ····['pbc_2ecpp_32',·['pbc.cpp',·['../ | 40 | ····['pbc_2ecpp_32',·['pbc.cpp',·['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 41 | ········['../pbc_8cpp.xhtml',·1,·'(Global·Namespace)'] | 41 | ········['../tests_2pbc_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 42 | ····]], | 42 | ····]], |
| 43 | ····['pbc_5faiuc_2eh_33',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]], | 43 | ····['pbc_5faiuc_2eh_33',·['pbc_aiuc.h',·['../pbc__aiuc_8h.xhtml',·1,·'']]], |
| 44 | ····['pbc_5faiuc_5fsycl_2eh_34',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]], | 44 | ····['pbc_5faiuc_5fsycl_2eh_34',·['pbc_aiuc_sycl.h',·['../pbc__aiuc__sycl_8h.xhtml',·1,·'']]], |
| 45 | ····['pbc_5fsimd_2ecpp_35',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]], | 45 | ····['pbc_5fsimd_2ecpp_35',·['pbc_simd.cpp',·['../pbc__simd_8cpp.xhtml',·1,·'']]], |
| 46 | ····['pbc_5fsimd_2eh_36',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]], | 46 | ····['pbc_5fsimd_2eh_36',·['pbc_simd.h',·['../pbc__simd_8h.xhtml',·1,·'']]], |
| 47 | ····['pbcenums_2ecpp_37',·['pbcenums.cpp',·['../ | 47 | ····['pbcenums_2ecpp_37',·['pbcenums.cpp',·['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 48 | ········['../pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'] | 48 | ········['../tests_2pbcenums_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 49 | ····]], | 49 | ····]], |
| 50 | ····['pbcenums_2eh_38',·['pbcenums.h',·['../pbcenums_8h.xhtml',·1,·'']]], | 50 | ····['pbcenums_2eh_38',·['pbcenums.h',·['../pbcenums_8h.xhtml',·1,·'']]], |
| 51 | ····['pdb2gmx_2ecpp_39',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]], | 51 | ····['pdb2gmx_2ecpp_39',·['pdb2gmx.cpp',·['../tests_2pdb2gmx_8cpp.xhtml',·1,·'']]], |
| 52 | ····['periodicactions_2ecpp_40',·['periodicactions.cpp',·['../periodicactions_8cpp.xhtml',·1,·'']]], | 52 | ····['periodicactions_2ecpp_40',·['periodicactions.cpp',·['../periodicactions_8cpp.xhtml',·1,·'']]], |
| 53 | ····['periodicactions_2eh_41',·['periodicactions.h',·['../periodicactions_8h.xhtml',·1,·'']]], | 53 | ····['periodicactions_2eh_41',·['periodicactions.h',·['../periodicactions_8h.xhtml',·1,·'']]], |
| 54 | ····['periodicactions_5fbasic_2ecpp_42',·['periodicactions_basic.cpp',·['../periodicactions__basic_8cpp.xhtml',·1,·'']]], | 54 | ····['periodicactions_5fbasic_2ecpp_42',·['periodicactions_basic.cpp',·['../periodicactions__basic_8cpp.xhtml',·1,·'']]], |
| 55 | ····['periodicactions_5fconstraints_2ecpp_43',·['periodicactions_constraints.cpp',·['../periodicactions__constraints_8cpp.xhtml',·1,·'']]], | 55 | ····['periodicactions_5fconstraints_2ecpp_43',·['periodicactions_constraints.cpp',·['../periodicactions__constraints_8cpp.xhtml',·1,·'']]], |
| Offset 12, 15 lines modified | Offset 12, 15 lines modified | ||
| 12 | ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'] | 12 | ········['../tests_2qmmminputgenerator_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 13 | ····]], | 13 | ····]], |
| 14 | ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]], | 14 | ····['qmmminputgenerator_2eh_6',·['qmmminputgenerator.h',·['../qmmminputgenerator_8h.xhtml',·1,·'']]], |
| 15 | ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'], | 15 | ····['qmmmoptions_2ecpp_7',·['qmmmoptions.cpp',·['../qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 16 | ········['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'] | 16 | ········['../tests_2qmmmoptions_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 17 | ····]], | 17 | ····]], |
| 18 | ····['qmmmoptions_2eh_8',·['qmmmoptions.h',·['../qmmmoptions_8h.xhtml',·1,·'']]], | 18 | ····['qmmmoptions_2eh_8',·['qmmmoptions.h',·['../qmmmoptions_8h.xhtml',·1,·'']]], |
| 19 | ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../ | 19 | ····['qmmmtopologypreprocessor_2ecpp_9',·['qmmmtopologypreprocessor.cpp',·['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'], |
| 20 | ········['../qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'] | 20 | ········['../tests_2qmmmtopologypreprocessor_8cpp.xhtml',·1,·'(Global·Namespace)'] |
| 21 | ····]], | 21 | ····]], |
| 22 | ····['qmmmtopologypreprocessor_2eh_10',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]], | 22 | ····['qmmmtopologypreprocessor_2eh_10',·['qmmmtopologypreprocessor.h',·['../qmmmtopologypreprocessor_8h.xhtml',·1,·'']]], |
| 23 | ····['qmmmtypes_2eh_11',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]], | 23 | ····['qmmmtypes_2eh_11',·['qmmmtypes.h',·['../qmmmtypes_8h.xhtml',·1,·'']]], |
| 24 | ····['quadraticsplinetable_2ecpp_12',·['quadraticsplinetable.cpp',·['../quadraticsplinetable_8cpp.xhtml',·1,·'']]], | 24 | ····['quadraticsplinetable_2ecpp_12',·['quadraticsplinetable.cpp',·['../quadraticsplinetable_8cpp.xhtml',·1,·'']]], |
| 25 | ····['quadraticsplinetable_2eh_13',·['quadraticsplinetable.h',·['../quadraticsplinetable_8h.xhtml',·1,·'']]] | 25 | ····['quadraticsplinetable_2eh_13',·['quadraticsplinetable.h',·['../quadraticsplinetable_8h.xhtml',·1,·'']]] |
| 26 | ]; | 26 | ]; |
| Offset 154, 15 lines modified | Offset 154, 15 lines modified | ||
| 154 | <dd><a·class="anchor"·id="_todo000195"></a>·One·of·the·major·bottlenecks·for·selection·performance·is·that·all·the·evaluation·is·carried·out·for·atoms.·There·are·several·cases·when·the·evaluation·could·be·done·for·residues·or·molecules·instead,·including·keywords·that·select·by·residue·and·cases·where·residue·centers·are·used·as·reference·positions.·Implementing·this·would·require·a·mechanism·for·recognizing·whether·something·can·be·evaluated·by·residue/molecule·instead·by·atom,·and·converting·selections·by·residue/molecule·into·selections·by·atom·when·necessary.·</dd> | 154 | <dd><a·class="anchor"·id="_todo000195"></a>·One·of·the·major·bottlenecks·for·selection·performance·is·that·all·the·evaluation·is·carried·out·for·atoms.·There·are·several·cases·when·the·evaluation·could·be·done·for·residues·or·molecules·instead,·including·keywords·that·select·by·residue·and·cases·where·residue·centers·are·used·as·reference·positions.·Implementing·this·would·require·a·mechanism·for·recognizing·whether·something·can·be·evaluated·by·residue/molecule·instead·by·atom,·and·converting·selections·by·residue/molecule·into·selections·by·atom·when·necessary.·</dd> |
| 155 | <dt>File·<a·class="el"·href="exactcontinuation_8cpp.xhtml">exactcontinuation.cpp</a>··</dt> | 155 | <dt>File·<a·class="el"·href="exactcontinuation_8cpp.xhtml">exactcontinuation.cpp</a>··</dt> |
| 156 | <dd><a·class="anchor"·id="_todo000231"></a>Extend·the·coverage·to·the·appending·case.·</dd> | 156 | <dd><a·class="anchor"·id="_todo000231"></a>Extend·the·coverage·to·the·appending·case.·</dd> |
| 157 | <dt>File·<a·class="el"·href="tests_2expanded_8cpp.xhtml">expanded.cpp</a>··</dt> | 157 | <dt>File·<a·class="el"·href="tests_2expanded_8cpp.xhtml">expanded.cpp</a>··</dt> |
| 158 | <dd><a·class="anchor"·id="_todo000105"></a>Add·more·tests·as·the·expanded·ensemble·implementation·gets·more·modular·(#3848).·</dd> | 158 | <dd><a·class="anchor"·id="_todo000105"></a>Add·more·tests·as·the·expanded·ensemble·implementation·gets·more·modular·(#3848).·</dd> |
| 159 | <dt>Member·<a·class="el"·href="device__management_8cpp.xhtml#a0579937ac9ed3975d887a3d976d94899">findDevices</a>··()</dt> | 159 | <dt>Member·<a·class="el"·href="device__management_8cpp.xhtml#a0579937ac9ed3975d887a3d976d94899">findDevices</a>··()</dt> |
| 160 | <dd><a·class="anchor"·id="_todo000064"></a>:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them.·</dd> | 160 | <dd><a·class="anchor"·id="_todo000064"></a>:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them.·</dd> |
| 161 | <dt>Member·<a·class="el"·href="expfit_8 | 161 | <dt>Member·<a·class="el"·href="expfit_8cpp.xhtml#a560ea7d97277b9e0576776ec695fb9b3">fit_acf</a>··(int·ncorr,·int·fitfn,·const·gmx_output_env_t·*oenv,·gmx_bool·bVerbose,·real·tbeginfit,·real·tendfit,·real·dt,·real·c1[],·real·*fit)</dt> |
| 162 | <dd><a·class="anchor"·id="_todo000015"></a>check·parameters··</dd> | 162 | <dd><a·class="anchor"·id="_todo000015"></a>check·parameters··</dd> |
| 163 | <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#a02435a07d79c82f6d260d8a2dcc82b90">ftype_is_bonded_potential</a>··(int·ftype)</dt> | 163 | <dt>Member·<a·class="el"·href="src_2gromacs_2listed__forces_2utilities_8h.xhtml#a02435a07d79c82f6d260d8a2dcc82b90">ftype_is_bonded_potential</a>··(int·ftype)</dt> |
| 164 | <dd><a·class="anchor"·id="_todo000076"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd> | 164 | <dd><a·class="anchor"·id="_todo000076"></a>This·function·could·go·away·when·idef·is·not·a·big·bucket·of·everything.··</dd> |
| 165 | <dt>Member·<a·class="el"·href="device__management__common_8cpp.xhtml#a4c6f328aacc0b724c1b5731fed2744eb">getDeviceComputeUnitFactor</a>··(const·<a·class="el"·href="structDeviceInformation.xhtml"·title="Platform-dependent·device·information.">DeviceInformation</a>·&deviceInfo)</dt> | 165 | <dt>Member·<a·class="el"·href="device__management__common_8cpp.xhtml#a4c6f328aacc0b724c1b5731fed2744eb">getDeviceComputeUnitFactor</a>··(const·<a·class="el"·href="structDeviceInformation.xhtml"·title="Platform-dependent·device·information.">DeviceInformation</a>·&deviceInfo)</dt> |
| 166 | <dd><a·class="anchor"·id="_todo000063"></a>:·Handled·AMD·RDNA?·</dd> | 166 | <dd><a·class="anchor"·id="_todo000063"></a>:·Handled·AMD·RDNA?·</dd> |
| 167 | <dt>Class·<a·class="el"·href="classgmx_1_1AbstractAnalysisArrayData.xhtml">gmx::AbstractAnalysisArrayData</a>··</dt> | 167 | <dt>Class·<a·class="el"·href="classgmx_1_1AbstractAnalysisArrayData.xhtml">gmx::AbstractAnalysisArrayData</a>··</dt> |
| 168 | <dd><a·class="anchor"·id="_todo000252"></a>·Add·support·for·multiple·data·sets.·</dd> | 168 | <dd><a·class="anchor"·id="_todo000252"></a>·Add·support·for·multiple·data·sets.·</dd> |
| Offset 549, 16 lines modified | Offset 549, 16 lines modified | ||
| 549 | ····['simd_20preprocessor_20macros_352',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]], | 549 | ····['simd_20preprocessor_20macros_352',·['Predefined·SIMD·preprocessor·macros',·['../page_simd.xhtml#autotoc_md66',·1,·'']]], |
| 550 | ····['simd_2eh_353',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]], | 550 | ····['simd_2eh_353',·['simd.h',·['../include_2gromacs_2simd_2simd_8h.xhtml',·1,·'']]], |
| 551 | ····['simd4_20implementation_354',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]], | 551 | ····['simd4_20implementation_354',·['SIMD4·implementation',·['../page_simd.xhtml#autotoc_md64',·1,·'']]], |
| 552 | ····['simd4bool_355',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]], | 552 | ····['simd4bool_355',·['Simd4Bool',·['../namespacegmx.xhtml#acb6a84be080be397c2c09cda9f315037',·1,·'gmx']]], |
| 553 | ····['simd4dbool_356',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'], | 553 | ····['simd4dbool_356',·['simd4dbool',·['../classgmx_1_1Simd4DBool.xhtml#a428de6b27a42a06dd0fd632660b3ae9d',·1,·'gmx::Simd4DBool::Simd4DBool()'], |
| 554 | ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool'] | 554 | ········['../classgmx_1_1Simd4DBool.xhtml',·1,·'gmx::Simd4DBool'] |
| 555 | ····]], | 555 | ····]], |
| 556 | ····['simd4double_357',·['simd4double',·['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'], | ||
| 556 | ···· | 557 | ········['../classgmx_1_1Simd4Double.xhtml#a92931f93554548894cd5daa60af49525',·1,·'gmx::Simd4Double::Simd4Double()'] |
| 557 | ········['../classgmx_1_1Simd4Double.xhtml',·1,·'gmx::Simd4Double'] | ||
| 558 | ····]], | 558 | ····]], |
| 559 | ····['simd4fbool_358',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()'], | 559 | ····['simd4fbool_358',·['simd4fbool',·['../classgmx_1_1Simd4FBool.xhtml#ad64754cbb774d9cab1ed08c49a6e28bc',·1,·'gmx::Simd4FBool::Simd4FBool()'], |
| 560 | ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool'] | 560 | ········['../classgmx_1_1Simd4FBool.xhtml',·1,·'gmx::Simd4FBool'] |
| 561 | ····]], | 561 | ····]], |
| 562 | ····['simd4float_359',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'], | 562 | ····['simd4float_359',·['simd4float',·['../classgmx_1_1Simd4Float.xhtml#a4d61d22b9955c0f6fa78804562704cbe',·1,·'gmx::Simd4Float::Simd4Float()'], |
| 563 | ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float'] | 563 | ········['../classgmx_1_1Simd4Float.xhtml',·1,·'gmx::Simd4Float'] |
| 564 | ····]], | 564 | ····]], |
| Offset 20, 29 lines modified | Offset 20, 29 lines modified | ||
| 20 | ····['unique_5fcptr_2eh_12',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]], | 20 | ····['unique_5fcptr_2eh_12',·['unique_cptr.h',·['../unique__cptr_8h.xhtml',·1,·'']]], |
| 21 | ····['unit_13',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm']]], | 21 | ····['unit_13',·['unit',·['../classgmx_1_1EnergyTerm.xhtml#aef5ad0000c2fbbc74c57f0b5e0ddb409',·1,·'gmx::EnergyTerm']]], |
| 22 | ····['unitcelliscompact_14',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]], | 22 | ····['unitcelliscompact_14',·['UnitCellIsCompact',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9ad4d785ddf0c77e7b697efd2b5ec376e1',·1,·'gmx']]], |
| 23 | ····['unitcellisrectangular_15',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]], | 23 | ····['unitcellisrectangular_15',·['UnitCellIsRectangular',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a8e7bda81ce54b8cf90c3b856c83e7d9f',·1,·'gmx']]], |
| 24 | ····['unitcellistriclinic_16',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]], | 24 | ····['unitcellistriclinic_16',·['UnitCellIsTriclinic',·['../group__module__coordinateio.xhtml#ggae520b2721d9d5166e7c015b2654bd1d9a99285c8187fb87e756f127435045dc3f',·1,·'gmx']]], |
| 25 | ····['unitcelltype_17',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]], | 25 | ····['unitcelltype_17',·['UnitCellType',·['../namespacegmx.xhtml#af897bff42be729e6eaf3c4dc6e199722',·1,·'gmx']]], |
| 26 | ····['unitcelltypenames_18',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]], | 26 | ····['unitcelltypenames_18',·['unitCellTypeNames',·['../namespacegmx.xhtml#ae81efb97e81499b750d906d26a29ce18',·1,·'gmx']]], |
| 27 | ····['unitvector_19',·['unitvector',·['../namespacegmx.xhtml#a5bc71ede59923e4d25b11a995139970a',·1,·'gmx::unitVector()'], | ||
| 27 | ···· | 28 | ········['../classgmx_1_1BasicVector.xhtml#a4e7218ba6cbb3bc735e31a43597ec7a9',·1,·'gmx::BasicVector::unitVector()'] |
| 28 | ········['../namespacegmx.xhtml#a5bc71ede59923e4d25b11a995139970a',·1,·'gmx::unitVector(const·VectorType·&v)'] | ||
| 29 | ····]], | 29 | ····]], |
| 30 | ····['unity_20',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]], | 30 | ····['unity_20',·['Unity',·['../namespacegmx.xhtml#ab0ad78613a262a1d4fcce5d18525099fa82dd98f1d663acc318e6a8ec4ab69b7a',·1,·'gmx']]], |
| 31 | ····['unknown_21',·['unknown',·['../ | 31 | ····['unknown_21',·['unknown',·['../namespacegmx.xhtml#a20e189e3f31f5f1e8581a5cc84063453a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::Unknown'], |
| 32 | ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown: device_information.h'], | 32 | ········['../device__information_8h.xhtml#a5514710e3c78d4816da9e8d2e3cd508ca88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'Unknown: device_information.h'], |
| 33 | ········['../ | 33 | ········['../classgmx_1_1CpuInfo.xhtml#acd7ff27553f3ff9fd1037c30c21a24f1a88183b946cc5f0e8c96b2e66e1c74a7e',·1,·'gmx::CpuInfo::Unknown'] |
| 34 | ····]], | 34 | ····]], |
| 35 | ····['unpackrecvbufkernel_22',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]], | 35 | ····['unpackrecvbufkernel_22',·['unpackRecvBufKernel',·['../namespacegmx.xhtml#a704128fa72f8ce7dcf08d0063a166036',·1,·'gmx']]], |
| 36 | ····['unpaddedarrayref_23',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]], | 36 | ····['unpaddedarrayref_23',·['unpaddedArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#ad5b878ca7749f5b8f52e006269fbfc2f',·1,·'gmx::ArrayRefWithPadding']]], |
| 37 | ····['unpaddedconstarrayref_24',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]], | 37 | ····['unpaddedconstarrayref_24',·['unpaddedConstArrayRef',·['../classgmx_1_1ArrayRefWithPadding.xhtml#a2c3f73497c6bc71264ae1af84b6522ae',·1,·'gmx::ArrayRefWithPadding']]], |
| 38 | ····['unset_25',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]], | 38 | ····['unset_25',·['Unset',·['../md__enums_8h.xhtml#a1df3eedfba9424ae3e518284a453d95cac9f88e098f6fe4e4e112eeb05ccb9671',·1,·'md_enums.h']]], |
| 39 | ····['update_26',·['update',·['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'], | ||
| 40 | ····· | 39 | ····['update_26',·['update',·['../classgmx_1_1Update.xhtml#afcb4065ad13efba2d3aa9b5225125e6f',·1,·'gmx::Update::Update()'], |
| 41 | ········['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'] | 40 | ········['../classgmx_1_1IRestraintPotential.xhtml#a6bc44212f005dbc7a03acf9a76b1074d',·1,·'gmx::IRestraintPotential::update()'], |
| 41 | ········['../classgmx_1_1Update.xhtml',·1,·'gmx::Update'] | ||
| 42 | ····]], | 42 | ····]], |
| 43 | ····['update_5fconstrain_5fgpu_2eh_27',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]], | 43 | ····['update_5fconstrain_5fgpu_2eh_27',·['update_constrain_gpu.h',·['../update__constrain__gpu_8h.xhtml',·1,·'']]], |
| 44 | ····['update_5fcoords_28',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]], | 44 | ····['update_5fcoords_28',·['update_coords',·['../classgmx_1_1Update.xhtml#a07bb5e84363cbcb95a10bc97647526e9',·1,·'gmx::Update']]], |
| 45 | ····['update_5fdisres_5fhistory_29',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]], | 45 | ····['update_5fdisres_5fhistory_29',·['update_disres_history',·['../disre_8h.xhtml#a80a6326aadca6d0b6f6f4753e63648e7',·1,·'disre.cpp']]], |
| 46 | ····['update_5ffor_5fconstraint_5fvirial_30',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]], | 46 | ····['update_5ffor_5fconstraint_5fvirial_30',·['update_for_constraint_virial',·['../classgmx_1_1Update.xhtml#acbd679269aa6945d6922c029770e8a84',·1,·'gmx::Update']]], |
| 47 | ····['update_5fsd_5fsecond_5fhalf_31',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]], | 47 | ····['update_5fsd_5fsecond_5fhalf_31',·['update_sd_second_half',·['../classgmx_1_1Update.xhtml#ab0206e61c30553bd8aa268891c466509',·1,·'gmx::Update']]], |
| 48 | ····['update_5ftemperature_5fconstants_32',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]], | 48 | ····['update_5ftemperature_5fconstants_32',·['update_temperature_constants',·['../classgmx_1_1Update.xhtml#afa5d8919006df7093a2224fbc2f9fd4c',·1,·'gmx::Update']]], |
| Offset 245, 31 lines modified | Offset 245, 31 lines modified | ||
| 245 | ····['orientationstimeandensembleavbuffer_103',·['orientationsTimeAndEnsembleAvBuffer',·['../structt__oriresdata.xhtml#a9ca5caaf9f175ebf180358fffc6972db',·1,·'t_oriresdata']]], | 245 | ····['orientationstimeandensembleavbuffer_103',·['orientationsTimeAndEnsembleAvBuffer',·['../structt__oriresdata.xhtml#a9ca5caaf9f175ebf180358fffc6972db',·1,·'t_oriresdata']]], |
| 246 | ····['other_104',·['Other',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0a6311ae17c1ee52b36e68aaf4ad066387',·1,·'gmx']]], | 246 | ····['other_104',·['Other',·['../namespacegmx.xhtml#a73202d646d57bcc963d8afd5a16015f0a6311ae17c1ee52b36e68aaf4ad066387',·1,·'gmx']]], |
| 247 | ····['output_105',·['output',·['../page_trajectoryanalysisframework.xhtml#autotoc_md26',·1,·'Coordinate·data·output'], | 247 | ····['output_105',·['output',·['../page_trajectoryanalysisframework.xhtml#autotoc_md26',·1,·'Coordinate·data·output'], |
| 248 | ········['../page_analysistemplate.xhtml#autotoc_md11',·1,·'Output'] | 248 | ········['../page_analysistemplate.xhtml#autotoc_md11',·1,·'Output'] |
| 249 | ····]], | 249 | ····]], |
| 250 | ····['output_20data_20analysisdata_106',·['Parallelizable·Handling·of·Output·Data·(analysisdata)',·['../group__module__analysisdata.xhtml',·1,·'']]], | 250 | ····['output_20data_20analysisdata_106',·['Parallelizable·Handling·of·Output·Data·(analysisdata)',·['../group__module__analysisdata.xhtml',·1,·'']]], |
| 251 | ····['output_20data_20handling_107',·['output·data·handling',·['../page_analysisdata.xhtml',·1,·'Analysis·output·data·handling'], | 251 | ····['output_20data_20handling_107',·['output·data·handling',·['../page_analysisdata.xhtml',·1,·'Analysis·output·data·handling'], |
| 252 | ········['../page_energyanalysisframework.xhtml#autotoc_md15',·1,·'Output·data·handling'], | ||
| 252 | ········['../page_trajectoryanalysisframework.xhtml#autotoc_md25',·1,·'Output·data·handling'] | 253 | ········['../page_trajectoryanalysisframework.xhtml#autotoc_md25',·1,·'Output·data·handling'] |
| 253 | ········['../page_energyanalysisframework.xhtml#autotoc_md15',·1,·'Output·data·handling'] | ||
| 254 | ····]], | 254 | ····]], |
| 255 | ····['outputadaptercontainer_2eh_108',·['outputadaptercontainer.h',·['../outputadaptercontainer_8h.xhtml',·1,·'']]], | 255 | ····['outputadaptercontainer_2eh_108',·['outputadaptercontainer.h',·['../outputadaptercontainer_8h.xhtml',·1,·'']]], |
| 256 | ····['outputadapterpointer_109',·['OutputAdapterPointer',·['../namespacegmx.xhtml#a931d7c3f10f668b68f3307c9a23aac82',·1,·'gmx']]], | 256 | ····['outputadapterpointer_109',·['OutputAdapterPointer',·['../namespacegmx.xhtml#a931d7c3f10f668b68f3307c9a23aac82',·1,·'gmx']]], |
| 257 | ····['outputadapters_2eh_110',·['outputadapters.h',·['../outputadapters_8h.xhtml',·1,·'(Global·Namespace)'], | 257 | ····['outputadapters_2eh_110',·['outputadapters.h',·['../tests_2outputadapters_8h.xhtml',·1,·'(Global·Namespace)'], |
| 258 | ········['../ | 258 | ········['../outputadapters_8h.xhtml',·1,·'(Global·Namespace)'] |
| 259 | ····]], | 259 | ····]], |
| 260 | ····['outputenv_5f_111',·['outputEnv_',·['../classgmx_1_1SimulatorEnv.xhtml#aa1aa20355975f59f3a92ff3e3b6926e3',·1,·'gmx::SimulatorEnv']]], | 260 | ····['outputenv_5f_111',·['outputEnv_',·['../classgmx_1_1SimulatorEnv.xhtml#aa1aa20355975f59f3a92ff3e3b6926e3',·1,·'gmx::SimulatorEnv']]], |
| 261 | ····['outputfile_112',·['outputfile',·['../classgmx_1_1FileNameOption.xhtml#a80e635f1f2b0eac13821b49a09a16936',·1,·'gmx::FileNameOption::outputFile()'], | ||
| 261 | ···· | 262 | ········['../classgmx_1_1TrajectoryFileOpener.xhtml#a95a59e0ec86cab7744c655097d17b211',·1,·'gmx::TrajectoryFileOpener::outputFile()'] |
| 262 | ········['../classgmx_1_1FileNameOption.xhtml#a80e635f1f2b0eac13821b49a09a16936',·1,·'gmx::FileNameOption::outputFile()'] | ||
| 263 | ····]], | 263 | ····]], |
| 264 | ····['outputrequirementoptiondirector_113',·['OutputRequirementOptionDirector',·['../classgmx_1_1OutputRequirementOptionDirector.xhtml',·1,·'gmx']]], | 264 | ····['outputrequirementoptiondirector_113',·['OutputRequirementOptionDirector',·['../classgmx_1_1OutputRequirementOptionDirector.xhtml',·1,·'gmx']]], |
| 265 | ····['outputrequirements_114',·['OutputRequirements',·['../structgmx_1_1OutputRequirements.xhtml',·1,·'gmx']]], | 265 | ····['outputrequirements_114',·['OutputRequirements',·['../structgmx_1_1OutputRequirements.xhtml',·1,·'gmx']]], |
| 266 | ····['outputselector_115',·['outputselector',·['../classgmx_1_1OutputSelector.xhtml',·1,·'gmx::OutputSelector'], | 266 | ····['outputselector_115',·['outputselector',·['../classgmx_1_1OutputSelector.xhtml',·1,·'gmx::OutputSelector'], |
| 267 | ········['../classgmx_1_1OutputSelector.xhtml#adfdcfbbeb5cbf85a8ec3cd2c0c92ab69',·1,·'gmx::OutputSelector::OutputSelector(const·Selection·&sel)'], | ||
| 268 | ········['../classgmx_1_1OutputSelector.xhtml#af79a9c1cb189a56a816f564b2ab506d6',·1,·'gmx::OutputSelector::OutputSelector(OutputSelector·&&old)·noexcept=default'] | 267 | ········['../classgmx_1_1OutputSelector.xhtml#af79a9c1cb189a56a816f564b2ab506d6',·1,·'gmx::OutputSelector::OutputSelector(OutputSelector·&&old)·noexcept=default'], |
| 268 | ········['../classgmx_1_1OutputSelector.xhtml#adfdcfbbeb5cbf85a8ec3cd2c0c92ab69',·1,·'gmx::OutputSelector::OutputSelector(const·Selection·&sel)'] | ||
| 269 | ····]], | 269 | ····]], |
| 270 | ····['outputselector_2eh_116',·['outputselector.h',·['../outputselector_8h.xhtml',·1,·'']]], | 270 | ····['outputselector_2eh_116',·['outputselector.h',·['../outputselector_8h.xhtml',·1,·'']]], |
| 271 | ····['outputselectorpointer_117',·['OutputSelectorPointer',·['../namespacegmx.xhtml#a139b5367368caa9a3189d367ecb2ba36',·1,·'gmx']]], | 271 | ····['outputselectorpointer_117',·['OutputSelectorPointer',·['../namespacegmx.xhtml#a139b5367368caa9a3189d367ecb2ba36',·1,·'gmx']]], |
| 272 | ····['over_20mpi_118',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]], | 272 | ····['over_20mpi_118',·['Spatial·domain·decomposition·(for·parallelization·over·MPI)',·['../group__module__domdec.xhtml',·1,·'']]], |
| 273 | ····['over_5falloc_5fdd_119',·['over_alloc_dd',·['../smalloc_8h.xhtml#af1533c63c1d40c5bb9bfaaa6d898369a',·1,·'smalloc.cpp']]], | 273 | ····['over_5falloc_5fdd_119',·['over_alloc_dd',·['../smalloc_8h.xhtml#af1533c63c1d40c5bb9bfaaa6d898369a',·1,·'smalloc.cpp']]], |
| 274 | ····['over_5falloc_5ffac_120',·['OVER_ALLOC_FAC',·['../smalloc_8h.xhtml#a49ab20d4d965f7279f9f90dd5300ef46',·1,·'smalloc.h']]], | 274 | ····['over_5falloc_5ffac_120',·['OVER_ALLOC_FAC',·['../smalloc_8h.xhtml#a49ab20d4d965f7279f9f90dd5300ef46',·1,·'smalloc.h']]], |
| 275 | ····['over_5falloc_5flarge_121',·['over_alloc_large',·['../smalloc_8h.xhtml#af01b4882f613834c3da2433b37ed5753',·1,·'smalloc.h']]], | 275 | ····['over_5falloc_5flarge_121',·['over_alloc_large',·['../smalloc_8h.xhtml#af01b4882f613834c3da2433b37ed5753',·1,·'smalloc.h']]], |
| Offset 72338, 19 lines modified | Offset 72338, 19 lines modified | ||
| 72338 | ····<member·refid="template_8cpp_1a0ddf1224851353fc92bfbff6f499fa97"·kind="function"> | 72338 | ····<member·refid="template_8cpp_1a0ddf1224851353fc92bfbff6f499fa97"·kind="function"> |
| 72339 | ······<name>main</name> | 72339 | ······<name>main</name> |
| 72340 | ····</member> | 72340 | ····</member> |
| 72341 | ··</compound> | 72341 | ··</compound> |
| 72342 | ··<compound·refid="abstractdata_8cpp"·kind="file"> | 72342 | ··<compound·refid="abstractdata_8cpp"·kind="file"> |
| 72343 | ····<name>abstractdata.cpp</name> | 72343 | ····<name>abstractdata.cpp</name> |
| 72344 | ··</compound> | 72344 | ··</compound> |
| 72345 | ··<compound·refid="a | 72345 | ··<compound·refid="arraydata_8cpp"·kind="file"> |
| 72346 | ····<name>a | 72346 | ····<name>arraydata.cpp</name> |
| 72347 | ··</compound> | 72347 | ··</compound> |
| 72348 | ··<compound·refid="tests_2a | 72348 | ··<compound·refid="tests_2arraydata_8cpp"·kind="file"> |
| 72349 | ····<name>a | 72349 | ····<name>arraydata.cpp</name> |
| 72350 | ··</compound> | 72350 | ··</compound> |
| 72351 | ··<compound·refid="dataframe_8cpp"·kind="file"> | 72351 | ··<compound·refid="dataframe_8cpp"·kind="file"> |
| 72352 | ····<name>dataframe.cpp</name> | 72352 | ····<name>dataframe.cpp</name> |
| 72353 | ··</compound> | 72353 | ··</compound> |
| 72354 | ··<compound·refid="datamodule_8cpp"·kind="file"> | 72354 | ··<compound·refid="datamodule_8cpp"·kind="file"> |
| 72355 | ····<name>datamodule.cpp</name> | 72355 | ····<name>datamodule.cpp</name> |
| 72356 | ··</compound> | 72356 | ··</compound> |
| Offset 446, 15 lines modified | Offset 446, 15 lines modified | ||
| 446 | ··············<anchor·id="todo_1_todo000064"/> | 446 | ··············<anchor·id="todo_1_todo000064"/> |
| 447 | ··············:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them. | 447 | ··············:·Check·if·errors·do·propagate·in·OpenCL·as·they·do·in·CUDA·and·whether·there·is·a·mechanism·to·"clear"·them. |
| 448 | ············</para> | 448 | ············</para> |
| 449 | ··········</listitem> | 449 | ··········</listitem> |
| 450 | ··········<varlistentry> | 450 | ··········<varlistentry> |
| 451 | ············<term> | 451 | ············<term> |
| 452 | ··············Member | 452 | ··············Member |
| 453 | ··············<ref·refid="expfit_8 | 453 | ··············<ref·refid="expfit_8cpp_1a560ea7d97277b9e0576776ec695fb9b3"·kindref="member">fit_acf</ref> |
| 454 | ··············(int·ncorr,·int·fitfn,·const | 454 | ··············(int·ncorr,·int·fitfn,·const |
| 455 | ··············<ref·refid="structgmx__output__env__t"·kindref="compound">gmx_output_env_t</ref> | 455 | ··············<ref·refid="structgmx__output__env__t"·kindref="compound">gmx_output_env_t</ref> |
| 456 | ··············*oenv,·gmx_bool·bVerbose,·real·tbeginfit,·real·tendfit,·real·dt,·real·c1[],·real·*fit) | 456 | ··············*oenv,·gmx_bool·bVerbose,·real·tbeginfit,·real·tendfit,·real·dt,·real·c1[],·real·*fit) |
| 457 | ············</term> | 457 | ············</term> |
| 458 | ··········</varlistentry> | 458 | ··········</varlistentry> |
| 459 | ··········<listitem> | 459 | ··········<listitem> |
| 460 | ············<para> | 460 | ············<para> |
| Offset 17628, 15 lines modified | Offset 17628, 15 lines modified | ||
| 17628 | Dimitrios·Karkoulis,·Peter·Kasson,·Sebastian·Kehl,·Sebastian·Keller,·Jiri·Kraus,·Per·Larsson,·Viveca·Lindahl, | 17628 | Dimitrios·Karkoulis,·Peter·Kasson,·Sebastian·Kehl,·Sebastian·Keller,·Jiri·Kraus,·Per·Larsson,·Viveca·Lindahl, |
| 17629 | Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg, | 17629 | Erik·Marklund,·Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers,·Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon·Vincent,·Teemu·Virolainen,·Christian·Wennberg, |
| 17630 | Maarten·Wolf,·Artem·Zhmurov | 17630 | Maarten·Wolf,·Artem·Zhmurov |
| 17631 | Project·leaders:·Berk·Hess,·Erik·Lindahl | 17631 | Project·leaders:·Berk·Hess,·Erik·Lindahl |
| 17632 | ©·1991·–·2000: | 17632 | ©·1991·–·2000: |
| 17633 | Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen, | 17633 | Department·of·Biophysical·Chemistry,·University·of·Groningen.·Nijenborgh·4,·9747·AG·Groningen, |
| 17634 | The·Netherlands. | 17634 | The·Netherlands. |
| 17635 | ©·2001·–·202 | 17635 | ©·2001·–·2025: |
| 17636 | The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University, | 17636 | The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology·and·Uppsala·University, |
| 17637 | Sweden. | 17637 | Sweden. |
| 17638 | This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time·of·the·contributors·–·our·first | 17638 | This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time·of·the·contributors·–·our·first |
| 17639 | priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information | 17639 | priority·is·to·improve·the·software.·It·is·worked·on·continuously,·which·in·some·cases·might·mean·the·information |
| 17640 | is·not·entirely·correct. | 17640 | is·not·entirely·correct. |
| 17641 | Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer | 17641 | Comments·on·form·and·content·are·welcome,·please·send·them·to·the·user·discussion·forum·or·the·developer |
| 17642 | discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·620)),·or·open·an·issue·on·our·issue | 17642 | discussion·forum·(see·our·webpage·or·this·section·on·how·to·contribute·(page·620)),·or·open·an·issue·on·our·issue |
| Offset 4115, 15 lines modified | Offset 4115, 15 lines modified | ||
| 00010120:·2c20·556e·6976·6572·7369·7479·206f·6620··,·University·of· | 00010120:·2c20·556e·6976·6572·7369·7479·206f·6620··,·University·of· | ||
| 00010130:·4772·6f6e·696e·6765·6e2e·0a4e·696a·656e··Groningen..Nijen | 00010130:·4772·6f6e·696e·6765·6e2e·0a4e·696a·656e··Groningen..Nijen | ||
| 00010140:·626f·7267·6820·342c·2039·3734·3720·4147··borgh·4,·9747·AG | 00010140:·626f·7267·6820·342c·2039·3734·3720·4147··borgh·4,·9747·AG | ||
| 00010150:·2047·726f·6e69·6e67·656e·2c20·5468·6520···Groningen,·The· | 00010150:·2047·726f·6e69·6e67·656e·2c20·5468·6520···Groningen,·The· | ||
| 00010160:·4e65·7468·6572·6c61·6e64·732e·3c2f·703e··Netherlands.</p> | 00010160:·4e65·7468·6572·6c61·6e64·732e·3c2f·703e··Netherlands.</p> | ||
| 00010170:·0a3c·2f64·6976·3e3c·2f62·6c6f·636b·7175··.</div></blockqu | 00010170:·0a3c·2f64·6976·3e3c·2f62·6c6f·636b·7175··.</div></blockqu | ||
| 00010180:·6f74·653e·0a3c·703e·c2a9·2032·3030·3120··ote>.<p>..·2001· | 00010180:·6f74·653e·0a3c·703e·c2a9·2032·3030·3120··ote>.<p>..·2001· | ||
| 00010190:·e280·9320·3230·323 | 00010190:·e280·9320·3230·3235·3a3c·2f70·3e0a·3c62··...·2025:</p>.<b | ||
| 000101a0:·6c6f·636b·7175·6f74·653e·0a3c·6469·763e··lockquote>.<div> | 000101a0:·6c6f·636b·7175·6f74·653e·0a3c·6469·763e··lockquote>.<div> | ||
| 000101b0:·3c70·3e54·6865·2047·524f·4d41·4353·2064··<p>The·GROMACS·d | 000101b0:·3c70·3e54·6865·2047·524f·4d41·4353·2064··<p>The·GROMACS·d | ||
| 000101c0:·6576·656c·6f70·6d65·6e74·2074·6561·6d73··evelopment·teams | 000101c0:·6576·656c·6f70·6d65·6e74·2074·6561·6d73··evelopment·teams | ||
| 000101d0:·2061·7420·7468·6520·526f·7961·6c20·496e···at·the·Royal·In | 000101d0:·2061·7420·7468·6520·526f·7961·6c20·496e···at·the·Royal·In | ||
| 000101e0:·7374·6974·7574·6520·6f66·2054·6563·686e··stitute·of·Techn | 000101e0:·7374·6974·7574·6520·6f66·2054·6563·686e··stitute·of·Techn | ||
| 000101f0:·6f6c·6f67·7920·616e·640a·5570·7073·616c··ology·and.Uppsal | 000101f0:·6f6c·6f67·7920·616e·640a·5570·7073·616c··ology·and.Uppsal | ||
| 00010200:·6120·556e·6976·6572·7369·7479·2c20·5377··a·University,·Sw | 00010200:·6120·556e·6976·6572·7369·7479·2c20·5377··a·University,·Sw |
| Offset 436, 15 lines modified | Offset 436, 15 lines modified | ||
| 436 | Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers, | 436 | Pieter·Meulenhoff,·Teemu·Murtola,·Sander·Pronk,·Michael·Shirts,·Alfons·Sijbers, |
| 437 | Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon | 437 | Balint·Soproni,·David·van·der·Spoel,·Peter·Tieleman,·Carsten·Uphoff,·Jon |
| 438 | Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov | 438 | Vincent,·Teemu·Virolainen,·Christian·Wennberg,·Maarten·Wolf,·Artem·Zhmurov |
| 439 | Project·leaders:·Berk·Hess,·Erik·Lindahl | 439 | Project·leaders:·Berk·Hess,·Erik·Lindahl |
| 440 | ©·1991·–·2000: | 440 | ©·1991·–·2000: |
| 441 | ·····Department·of·Biophysical·Chemistry,·University·of·Groningen. | 441 | ·····Department·of·Biophysical·Chemistry,·University·of·Groningen. |
| 442 | ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands. | 442 | ·····Nijenborgh·4,·9747·AG·Groningen,·The·Netherlands. |
| 443 | ©·2001·–·202 | 443 | ©·2001·–·2025: |
| 444 | ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology | 444 | ·····The·GROMACS·development·teams·at·the·Royal·Institute·of·Technology |
| 445 | ·····and·Uppsala·University,·Sweden. | 445 | ·····and·Uppsala·University,·Sweden. |
| 446 | This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time | 446 | This·manual·is·not·complete·and·has·no·pretension·to·be·so·due·to·lack·of·time |
| 447 | of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is | 447 | of·the·contributors·–·our·first·priority·is·to·improve·the·software.·It·is |
| 448 | worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not | 448 | worked·on·continuously,·which·in·some·cases·might·mean·the·information·is·not |
| 449 | entirely·correct. | 449 | entirely·correct. |
| 450 | Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r | 450 | Comments·on·form·and·content·are·welcome,·please·send·them·to·the·_\x8u_\x8s_\x8e_\x8r |
| Offset 490, 14 lines modified | Offset 490, 15 lines modified | ||
| 490 | ········"debian_2024":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357], | 490 | ········"debian_2024":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357], |
| 491 | ········"1_1":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357], | 491 | ········"1_1":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357], |
| 492 | ········"tar":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357], | 492 | ········"tar":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357], |
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| 496 | ········"0a1":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357], | 496 | ········"0a1":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357], |
| 497 | ········"2025":·[0,·1,·2,·3,·4,·5,·6,·7,·8,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·19,·20,·21,·22,·23,·24,·25,·26,·27,·28,·29,·30,·31,·32,·33,·34,·35,·36,·37,·38,·39,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·219,·220,·221,·222,·223,·224,·225,·226,·227,·228,·229,·230,·231,·232,·233,·234,·235,·236,·237,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·250,·251,·252,·253,·254,·255,·256,·257,·258,·259,·260,·261,·262,·263,·264,·265,·266,·267,·268,·269,·270,·271,·272,·273,·274,·275,·276,·277,·278,·279,·280,·281,·282,·283,·284,·285,·286,·287,·288,·289,·290,·291,·292,·293,·294,·295,·296,·297,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·309,·310,·311,·312,·313,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·349,·350,·351,·352,·353,·354,·355,·356,·357], | ||
| 497 | ········"public":·[1,·3,·6,·9,·12,·13,·14,·18,·19,·28,·30,·34,·40,·193,·194,·235,·313,·354,·356], | 498 | ········"public":·[1,·3,·6,·9,·12,·13,·14,·18,·19,·28,·30,·34,·40,·193,·194,·235,·313,·354,·356], |
| 498 | ········"applic":·[1,·4,·6,·8,·20,·39,·51,·106,·149,·158,·161,·179,·182,·190,·194,·196,·197,·200,·201,·203,·210,·262,·268,·327,·329,·351,·354,·357], | 499 | ········"applic":·[1,·4,·6,·8,·20,·39,·51,·106,·149,·158,·161,·179,·182,·190,·194,·196,·197,·200,·201,·203,·210,·262,·268,·327,·329,·351,·354,·357], |
| 499 | ········"program":·[1,·2,·9,·19,·22,·23,·30,·31,·36,·41,·42,·43,·45,·48,·49,·50,·63,·65,·67,·69,·72,·75,·77,·80,·83,·85,·87,·90,·93,·95,·99,·104,·106,·116,·121,·124,·127,·129,·130,·134,·135,·136,·137,·138,·140,·142,·143,·144,·145,·146,·148,·151,·152,·153,·154,·156,·157,·161,·162,·163,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·179,·181,·182,·186,·190,·191,·192,·194,·211,·213,·217,·219,·221,·227,·229,·241,·246,·267,·311,·312,·342,·343,·344,·346,·347,·353,·354,·355,·357], | 500 | ········"program":·[1,·2,·9,·19,·22,·23,·30,·31,·36,·41,·42,·43,·45,·48,·49,·50,·63,·65,·67,·69,·72,·75,·77,·80,·83,·85,·87,·90,·93,·95,·99,·104,·106,·116,·121,·124,·127,·129,·130,·134,·135,·136,·137,·138,·140,·142,·143,·144,·145,·146,·148,·151,·152,·153,·154,·156,·157,·161,·162,·163,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·179,·181,·182,·186,·190,·191,·192,·194,·211,·213,·217,·219,·221,·227,·229,·241,·246,·267,·311,·312,·342,·343,·344,·346,·347,·353,·354,·355,·357], |
| 500 | ········"gromac":·[1,·2,·3,·4,·5,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·20,·21,·22,·23,·24,·25,·26,·27,·28,·31,·32,·33,·35,·36,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·220,·221,·227,·228,·229,·230,·231,·232,·241,·242,·243,·244,·245,·246,·247,·255,·258,·259,·260,·261,·262,·271,·273,·274,·275,·277,·278,·287,·289,·290,·291,·292,·293,·294,·302,·303,·305,·306,·307,·308,·309,·310,·317,·318,·320,·321,·322,·323,·324,·325,·328,·329,·331,·332,·333,·334,·336,·340,·342,·344,·345,·347,·348,·350,·351,·352,·356,·357], | 501 | ········"gromac":·[1,·2,·3,·4,·5,·9,·10,·11,·12,·13,·14,·15,·16,·17,·18,·20,·21,·22,·23,·24,·25,·26,·27,·28,·31,·32,·33,·35,·36,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·220,·221,·227,·228,·229,·230,·231,·232,·241,·242,·243,·244,·245,·246,·247,·255,·258,·259,·260,·261,·262,·271,·273,·274,·275,·277,·278,·287,·289,·290,·291,·292,·293,·294,·302,·303,·305,·306,·307,·308,·309,·310,·317,·318,·320,·321,·322,·323,·324,·325,·328,·329,·331,·332,·333,·334,·336,·340,·342,·344,·345,·347,·348,·350,·351,·352,·356,·357], |
| 501 | ········"user":·[1,·2,·3,·6,·7,·8,·9,·11,·16,·17,·20,·22,·25,·28,·29,·30,·31,·33,·34,·35,·37,·38,·39,·40,·51,·55,·72,·77,·78,·80,·89,·95,·101,·106,·125,·129,·135,·140,·144,·147,·148,·150,·151,·152,·153,·155,·176,·180,·181,·185,·189,·190,·191,·192,·193,·194,·196,·198,·204,·205,·206,·207,·210,·213,·217,·219,·221,·227,·228,·233,·234,·236,·242,·244,·245,·246,·248,·249,·250,·252,·253,·256,·262,·264,·266,·267,·268,·272,·273,·274,·275,·276,·278,·279,·283,·288,·291,·296,·303,·304,·305,·309,·310,·311,·312,·313,·319,·320,·327,·330,·331,·332,·334,·338,·339,·341,·342,·343,·344,·346,·350,·353,·354,·355,·357], | 502 | ········"user":·[1,·2,·3,·6,·7,·8,·9,·11,·16,·17,·20,·22,·25,·28,·29,·30,·31,·33,·34,·35,·37,·38,·39,·40,·51,·55,·72,·77,·78,·80,·89,·95,·101,·106,·125,·129,·135,·140,·144,·147,·148,·150,·151,·152,·153,·155,·176,·180,·181,·185,·189,·190,·191,·192,·193,·194,·196,·198,·204,·205,·206,·207,·210,·213,·217,·219,·221,·227,·228,·233,·234,·236,·242,·244,·245,·246,·248,·249,·250,·252,·253,·256,·262,·264,·266,·267,·268,·272,·273,·274,·275,·276,·278,·279,·283,·288,·291,·296,·303,·304,·305,·309,·310,·311,·312,·313,·319,·320,·327,·330,·331,·332,·334,·338,·339,·341,·342,·343,·344,·346,·350,·353,·354,·355,·357], |
| 502 | ········"option":·[1,·2,·4,·7,·8,·9,·11,·17,·19,·20,·22,·25,·26,·29,·30,·34,·35,·36,·38,·144,·146,·148,·149,·150,·152,·153,·155,·157,·162,·165,·166,·168,·174,·176,·178,·180,·182,·183,·185,·186,·190,·192,·193,·196,·197,·198,·199,·200,·201,·203,·205,·206,·207,·208,·209,·211,·213,·214,·215,·216,·218,·219,·221,·222,·223,·224,·225,·227,·229,·231,·232,·235,·236,·237,·242,·244,·246,·247,·252,·257,·276,·278,·279,·287,·289,·293,·303,·305,·311,·312,·313,·318,·321,·323,·331,·332,·342,·343,·347,·348,·352,·353,·354,·356,·357], | 503 | ········"option":·[1,·2,·4,·7,·8,·9,·11,·17,·19,·20,·22,·25,·26,·29,·30,·34,·35,·36,·38,·144,·146,·148,·149,·150,·152,·153,·155,·157,·162,·165,·166,·168,·174,·176,·178,·180,·182,·183,·185,·186,·190,·192,·193,·196,·197,·198,·199,·200,·201,·203,·205,·206,·207,·208,·209,·211,·213,·214,·215,·216,·218,·219,·221,·222,·223,·224,·225,·227,·229,·231,·232,·235,·236,·237,·242,·244,·246,·247,·252,·257,·276,·278,·279,·287,·289,·293,·303,·305,·311,·312,·313,·318,·321,·323,·331,·332,·342,·343,·347,·348,·352,·353,·354,·356,·357], |
| 503 | ········"build":·[1,·3,·4,·5,·6,·9,·10,·12,·13,·14,·15,·16,·17,·18,·19,·22,·23,·24,·27,·28,·30,·31,·32,·33,·34,·35,·36,·37,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·220,·221,·226,·227,·228,·230,·231,·232,·233,·234,·236,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·252,·253,·254,·255,·256,·258,·259,·260,·261,·262,·263,·264,·265,·266,·269,·270,·271,·272,·273,·274,·275,·276,·278,·279,·280,·283,·284,·285,·286,·287,·289,·290,·291,·292,·293,·294,·295,·296,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·311,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·350,·351,·352,·353,·354,·355,·356,·357], | 504 | ········"build":·[1,·3,·4,·5,·6,·9,·10,·12,·13,·14,·15,·16,·17,·18,·19,·22,·23,·24,·27,·28,·30,·31,·32,·33,·34,·35,·36,·37,·40,·41,·42,·43,·44,·45,·46,·47,·48,·49,·50,·51,·52,·53,·54,·55,·56,·57,·58,·59,·60,·61,·62,·63,·64,·65,·66,·67,·68,·69,·70,·71,·72,·73,·74,·75,·76,·77,·78,·79,·80,·81,·82,·83,·84,·85,·86,·87,·88,·89,·90,·91,·92,·93,·94,·95,·96,·97,·98,·99,·100,·101,·102,·103,·104,·105,·106,·107,·108,·109,·110,·111,·112,·113,·114,·115,·116,·117,·118,·119,·120,·121,·122,·123,·124,·125,·126,·127,·128,·129,·130,·131,·132,·133,·134,·135,·136,·137,·138,·139,·140,·141,·142,·143,·144,·145,·146,·147,·148,·149,·150,·151,·152,·153,·154,·155,·156,·157,·158,·159,·160,·161,·162,·163,·164,·165,·166,·167,·168,·169,·170,·171,·172,·173,·174,·175,·176,·177,·178,·179,·180,·181,·182,·183,·184,·185,·186,·187,·188,·189,·190,·191,·192,·193,·194,·195,·196,·197,·198,·199,·200,·201,·202,·203,·204,·205,·206,·207,·208,·209,·210,·211,·212,·213,·214,·215,·216,·217,·218,·220,·221,·226,·227,·228,·230,·231,·232,·233,·234,·236,·238,·239,·240,·241,·242,·243,·244,·245,·246,·247,·248,·249,·252,·253,·254,·255,·256,·258,·259,·260,·261,·262,·263,·264,·265,·266,·269,·270,·271,·272,·273,·274,·275,·276,·278,·279,·280,·283,·284,·285,·286,·287,·289,·290,·291,·292,·293,·294,·295,·296,·298,·299,·300,·301,·302,·303,·304,·305,·306,·307,·308,·311,·314,·315,·316,·317,·318,·319,·320,·321,·322,·323,·324,·325,·326,·327,·328,·329,·330,·331,·332,·333,·334,·335,·336,·337,·338,·339,·340,·341,·342,·343,·344,·345,·346,·347,·348,·350,·351,·352,·353,·354,·355,·356,·357], |
