--- /srv/reproducible-results/rbuild-debian/r-b-build.7sk61HIx/b1/mia_2.4.7-11_arm64.changes +++ /srv/reproducible-results/rbuild-debian/r-b-build.7sk61HIx/b2/mia_2.4.7-11_arm64.changes ├── Files │ @@ -1,9 +1,9 @@ │ │ 912461c2da4435de163732714ea26bae 88901176 debug optional libmia-2.4-4-dbgsym_2.4.7-11_arm64.deb │ 65bd21000ae5145afac22ccee8ffe478 4057832 libs optional libmia-2.4-4_2.4.7-11_arm64.deb │ eac29da36508b2b1a7913ea2bc701d8f 204524 libdevel optional libmia-2.4-dev_2.4.7-11_arm64.deb │ b699ced10913b8a173b1696090a66aa4 4768408 doc optional libmia-2.4-doc_2.4.7-11_all.deb │ 9c7486d4c060693bc4439c1adbaf0331 26168 science optional mia-doctools_2.4.7-11_all.deb │ 5f251d6d5d35eb916602a7084aaf8473 36085800 debug optional mia-tools-dbgsym_2.4.7-11_arm64.deb │ - 2774eafe075cd52489fa4ff20f70a3f1 96304 doc optional mia-tools-doc_2.4.7-11_all.deb │ - c384b6289796d4d4ec507efdc0d0ff92 1760192 science optional mia-tools_2.4.7-11_arm64.deb │ + 28058e98577df47ce73d3ebc9fe3458f 96288 doc optional mia-tools-doc_2.4.7-11_all.deb │ + 329881bbe9e82787015b548e76f26522 1760320 science optional mia-tools_2.4.7-11_arm64.deb ├── mia-tools-doc_2.4.7-11_all.deb │ ├── file list │ │ @@ -1,3 +1,3 @@ │ │ -rw-r--r-- 0 0 0 4 2022-08-17 13:27:13.000000 debian-binary │ │ -rw-r--r-- 0 0 0 5944 2022-08-17 13:27:13.000000 control.tar.xz │ │ --rw-r--r-- 0 0 0 90168 2022-08-17 13:27:13.000000 data.tar.xz │ │ +-rw-r--r-- 0 0 0 90152 2022-08-17 13:27:13.000000 data.tar.xz │ ├── control.tar.xz │ │ ├── control.tar │ │ │ ├── ./md5sums │ │ │ │ ├── ./md5sums │ │ │ │ │┄ Files differ │ ├── data.tar.xz │ │ ├── data.tar │ │ │ ├── ./usr/share/doc/mia-2.4/userref/SecPlugintype2dimagefilter.html │ │ │ │ @@ -57,15 +57,15 @@ │ │ │ │
│ │ │ │
intensity bandpass filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
max | float | 3.40282e+38 | maximum of the band |
min | float | 0 | minimum of the band |
│ │ │ │
│ │ │ │
image binarize filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
max | float | 3.40282e+38 | maximum of accepted range |
min | float | 0 | minimum of accepted range |
│ │ │ │
│ │ │ │
morphological close. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
hint | set | black | a hint at the main image content Supported values are:(black, white, ) |
shape | factory | [sphere:r=2] | structuring element. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │ -
Combine two images with the given combiner operator. if 'reverse' is set to false, the first operator is the image passed through the filter pipeline, and the second image is loaded from the file given with the 'image' parameter the moment the filter is run.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
image | io | (input,required) | second image that is needed in the combiner. For supported file types see Plugin type: 2dimage/io |
op | factory | (required) | Image combiner to be applied to the images. For supported plug-ins see Plugin type: 2dimage/combiner |
reverse | bool | 0 | reverse the order in which the images passed to the combiner |
│ │ │ │ +
Combine two images with the given combiner operator. if 'reverse' is set to false, the first operator is the image passed through the filter pipeline, and the second image is loaded from the file given with the 'image' parameter the moment the filter is run.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
image | io | (required,input) | second image that is needed in the combiner. For supported file types see Plugin type: 2dimage/io |
op | factory | (required) | Image combiner to be applied to the images. For supported plug-ins see Plugin type: 2dimage/combiner |
reverse | bool | 0 | reverse the order in which the images passed to the combiner |
│ │ │ │
│ │ │ │
image pixel format conversion filter. Supported parameters are:
Name | Type | Default | Description | ||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
a | float | 1 | linear conversion parameter a | ||||||||||||||||||||||||||
b | float | 0 | linear conversion parameter b | ||||||||||||||||||||||||||
map | dict | opt |
| ||||||||||||||||||||||||||
repn | dict | ubyte |
|
│ │ │ │
│ │ │ │
Crop a region of an image, the region is always clamped to the original image size.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
end | streamable | [[-1,-1]] | end of crop region |
start | streamable | [[0,0]] | start of crop region |
│ │ │ │
│ │ │ │
2d image stack dilate filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
hint | set | black | a hint at the main image content Supported values are:(black, white, ) |
shape | factory | [sphere:r=2] | structuring element. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │ @@ -81,23 +81,23 @@ │ │ │ │
│ │ │ │
│ │ │ │
│ │ │ │
2D image k-means filter. In the output image the pixel value represents the class membership and the class centers are stored as attribute in the image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
c | int in [2, inf) | 3 | number of classes |
│ │ │ │
│ │ │ │
Label connected components in a binary 2D image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
n | factory | 4n | Neighborhood mask to describe connectivity.. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │ -
Image filter to remap label id's. Only applicable to images with integer valued intensities/labels.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
map | string | (input,required) | Label mapping file |
│ │ │ │ +
Image filter to remap label id's. Only applicable to images with integer valued intensities/labels.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
map | string | (required,input) | Label mapping file |
│ │ │ │
│ │ │ │
A filter that only creates output voxels that are already created in the input image. Scaling is done by using a voting algorithms that selects the target pixel value based on the highest pixel count of a certain label in the corresponding source region. If the region comprises two labels with the same count, the one with the lower number wins.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
out-size | 2dbounds | (required) | target size given as two coma separated values |
│ │ │ │
│ │ │ │ -
Load the input image from a file and use it to replace the current image in the pipeline.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (input,required) | name of the input file to load from.. For supported file types see Plugin type: 2dimage/io |
│ │ │ │ +
Load the input image from a file and use it to replace the current image in the pipeline.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (required,input) | name of the input file to load from.. For supported file types see Plugin type: 2dimage/io |
│ │ │ │
│ │ │ │ -
2D masking, one of the two input images must by of type bit.. Supported parameters are:
Name | Type | Default | Description | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
fill | dict | min |
| ||||||||
input | io | (input,required) | second input image file name. For supported file types see Plugin type: 2dimage/io | ||||||||
inverse | bool | 0 | set to true to use the inverse of the mask for masking |
│ │ │ │ +
2D masking, one of the two input images must by of type bit.. Supported parameters are:
Name | Type | Default | Description | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
fill | dict | min |
| ||||||||
input | io | (required,input) | second input image file name. For supported file types see Plugin type: 2dimage/io | ||||||||
inverse | bool | 0 | set to true to use the inverse of the mask for masking |
│ │ │ │
│ │ │ │ -
This filter implements the uses the max-flow min-cut algorithmfor image segmentation. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
sink-flow | io | (input,required) | Image of float type to define the per-pixel flow to the sink. For supported file types see Plugin type: 2dimage/io |
source-flow | io | (input,required) | Image of float type to define the per-pixel flow to the source. For supported file types see Plugin type: 2dimage/io |
│ │ │ │ +
This filter implements the uses the max-flow min-cut algorithmfor image segmentation. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
sink-flow | io | (required,input) | Image of float type to define the per-pixel flow to the sink. For supported file types see Plugin type: 2dimage/io |
source-flow | io | (required,input) | Image of float type to define the per-pixel flow to the source. For supported file types see Plugin type: 2dimage/io |
│ │ │ │
│ │ │ │
2D image mean filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | half filter width |
│ │ │ │
│ │ │ │
Filter that evaluates simultaniously the pixel wise mean and the variance of an image in a given window. Pixel intensities below the given threshold will be ignored and at their loctions the output mean and variation are set to zero. The mean intensity image is directly passed as float image to the pipeline, the variation image is saved to a file given with the varfile parameter.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
thresh | double in [0, inf) | 0 | Intensity thresholding parameter: Pixels with intensities below this threshold will be set to zero, and also not used when evaluating mean and variation |
varfile | io | (required,output) | name of the output file to save the variation image too.. For supported file types see Plugin type: 2dimage/io |
w | uint in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
2D image median filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | half filter width |
│ │ │ │
│ │ │ │ @@ -109,15 +109,15 @@ │ │ │ │
│ │ │ │
2D image noise filter: add additive or modulated noise to an image. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
g | factory | [gauss:mu=0,sigma=10] | noise generator. For supported plug-ins see Plugin type: generator/noise |
mod | bool | 0 | additive or modulated noise |
│ │ │ │
│ │ │ │
morphological open. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
hint | set | black | a hint at the main image content Supported values are:(black, white, ) |
shape | factory | [sphere:r=2] | structuring element. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │
Morphological pruning. Pruning until convergence will erase all pixels but closed loops.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
iter | int in [1, 1000000] | 0 | Number of iterations to run, 0=until convergence |
│ │ │ │
│ │ │ │ -
Region growing startin from a seed until only along increasing gradients. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
n | factory | 8n | Neighborhood shape. For supported plug-ins see Plugin type: 2dimage/shape |
seed | io | (input,required) | seed image (bit valued). For supported file types see Plugin type: 2dimage/io |
│ │ │ │ +
Region growing startin from a seed until only along increasing gradients. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
n | factory | 8n | Neighborhood shape. For supported plug-ins see Plugin type: 2dimage/shape |
seed | io | (required,input) | seed image (bit valued). For supported file types see Plugin type: 2dimage/io |
│ │ │ │
│ │ │ │
salt and pepper 3d filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
thresh | float in (0, inf) | 100 | thresh value |
w | int in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
2D image downscale filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
interp | factory | [bspline:d=3] | interpolation method to be used . For supported plug-ins see Plugin type: 1d/splinekernel |
s | 2dbounds | [[0,0]] | target size as 2D vector |
sx | uint in [0, inf) | 0 | target size in x direction, 0: use input size |
sy | uint in [0, inf) | 0 | target size in y direction, 0: use input size |
│ │ │ │
│ │ │ │
│ │ │ │
│ │ │ │ @@ -125,25 +125,25 @@ │ │ │ │
│ │ │ │
2D image filter that evaluates the mean over a given neighborhood shape. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 8n | neighborhood shape to evaluate the mean. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │
The 2D Sobel filter for gradient evaluation. Note that the output pixel type of the filtered image is the same as the input pixel type, so converting the input beforehand to a floating point valued image is recommendable.. Supported parameters are:
Name | Type | Default | Description | ||||||
---|---|---|---|---|---|---|---|---|---|
dir | dict | x |
|
│ │ │ │
│ │ │ │
This plug-in sorts the labels of a gray-scale image so that the lowest label value corresponts to the lable with themost pixels. The background (0) is not touched. (This plug-in doesn't take parameters)
│ │ │ │
│ │ │ │ -
seeded watershead. The algorithm extracts exactly so many reagions as initial labels are given in the seed image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
grad | bool | 0 | Interpret the input image as gradient. |
mark | bool | 0 | Mark the segmented watersheds with a special gray scale value |
n | factory | [sphere:r=1] | Neighborhood for watershead region growing. For supported plug-ins see Plugin type: 2dimage/shape |
seed | string | (input,required) | seed input image containing the lables for the initial regions |
│ │ │ │ +
seeded watershead. The algorithm extracts exactly so many reagions as initial labels are given in the seed image.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
grad | bool | 0 | Interpret the input image as gradient. |
mark | bool | 0 | Mark the segmented watersheds with a special gray scale value |
n | factory | [sphere:r=1] | Neighborhood for watershead region growing. For supported plug-ins see Plugin type: 2dimage/shape |
seed | string | (required,input) | seed input image containing the lables for the initial regions |
│ │ │ │
│ │ │ │
Save the input image to a file and also pass it through to the next filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (required,output) | name of the output file to save the image too.. For supported file types see Plugin type: 2dimage/io |
│ │ │ │
│ │ │ │
Morphological thinning. Thinning until convergence will result in a 8-connected skeleton. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
iter | int in [1, 1000000] | 0 | Number of iterations to run, 0=until convergence |
│ │ │ │
│ │ │ │
This filter sets all pixels of an image to zero that fall below a certain threshold and whose neighbours in a given neighborhood shape also fall below a this threshold. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 4n | neighborhood shape to take into account. For supported plug-ins see Plugin type: 2dimage/shape |
thresh | double | 5 | The threshold value |
│ │ │ │
│ │ │ │
2D image thresholded tmean filter: The output pixel value is zero if the input pixel value is below the given threshold, otherwise the pixels in the evaluation windows are only considered if the input pixel intensity is above the threshold.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
t | float | 0 | Threshold for pixels not to take into account |
w | int in [1, inf) | 1 | half filter width |
│ │ │ │
│ │ │ │ -
Transform the input image with the given transformation.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (input,required) | Name of the file containing the transformation.. For supported file types see Plugin type: 2dtransform/io |
│ │ │ │ +
Transform the input image with the given transformation.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
file | io | (required,input) | Name of the file containing the transformation.. For supported file types see Plugin type: 2dtransform/io |
│ │ │ │
│ │ │ │
basic watershead segmentation.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
evalgrad | bool | 0 | Set to 1 if the input image does not represent a gradient norm image |
mark | bool | 0 | Mark the segmented watersheds with a special gray scale value |
n | factory | [sphere:r=1] | Neighborhood for watershead region growing. For supported plug-ins see Plugin type: 2dimage/shape |
thresh | float in [0, 1) | 0 | Relative gradient norm threshold. The actual value threshold value is thresh * (max_grad - min_grad) + min_grad. Bassins separated by gradients with a lower norm will be joined |
│ │ │ │
│ │ │ │ mia-2dimagefilter │ │ │ │ mia-2dimagefilterstack │ │ │ │ mia-2dsegment-fuzzyw │ │ │ │ mia-2dseries2dordermedian │ │ │ │ ├── html2text {} │ │ │ │ │ @@ -65,15 +65,15 @@ │ │ │ │ │ combiner │ │ │ │ │ Combine two images with the given combiner operator. if 'reverse' is set to │ │ │ │ │ false, the first operator is the image passed through the filter pipeline, and │ │ │ │ │ the second image is loaded from the file given with the 'image' parameter the │ │ │ │ │ moment the filter is run.. Supported parameters are: │ │ │ │ │ _____________________________________________________________________________ │ │ │ │ │ |__Name_|__Type_|______Default___|________________________Description_________| │ │ │ │ │ -| image | io |(input,required)|second image that is needed in the combiner.| │ │ │ │ │ +| image | io |(required,input)|second image that is needed in the combiner.| │ │ │ │ │ | | | |For supported file types see Plugin_type: | │ │ │ │ │ |_______|_______|________________|2dimage/io__________________________________| │ │ │ │ │ | op |factory| (required) |Image combiner to be applied to the images. | │ │ │ │ │ | | | |For supported plug-ins see Plugin_type: | │ │ │ │ │ |_______|_______|________________|2dimage/combiner____________________________| │ │ │ │ │ |reverse| bool | 0 |reverse the order in which the images passed| │ │ │ │ │ |_______|_______|________________|to_the_combiner_____________________________| │ │ │ │ │ @@ -174,57 +174,57 @@ │ │ │ │ │ | n |factory| 4n |Neighborhood mask to describe connectivity.. For | │ │ │ │ │ |____|_______|_______|supported_plug-ins_see_Plugin_type:_2dimage/shape| │ │ │ │ │ labelmap │ │ │ │ │ Image filter to remap label id's. Only applicable to images with integer valued │ │ │ │ │ intensities/labels.. Supported parameters are: │ │ │ │ │ _______________________________________________ │ │ │ │ │ |Name|_Type_|______Default___|_____Description__| │ │ │ │ │ -|map_|string|(input,required)|Label_mapping_file| │ │ │ │ │ +|map_|string|(required,input)|Label_mapping_file| │ │ │ │ │ labelscale │ │ │ │ │ A filter that only creates output voxels that are already created in the input │ │ │ │ │ image. Scaling is done by using a voting algorithms that selects the target │ │ │ │ │ pixel value based on the highest pixel count of a certain label in the │ │ │ │ │ corresponding source region. If the region comprises two labels with the same │ │ │ │ │ count, the one with the lower number wins.. Supported parameters are: │ │ │ │ │ ___________________________________________________________________________ │ │ │ │ │ |___Name_|___Type_|__Default_|__________________________Description_________| │ │ │ │ │ |out-size|2dbounds|(required)|target_size_given_as_two_coma_separated_values| │ │ │ │ │ load │ │ │ │ │ Load the input image from a file and use it to replace the current image in the │ │ │ │ │ pipeline.. Supported parameters are: │ │ │ │ │ ___________________________________________________________________________ │ │ │ │ │ |Name|Type|______Default___|___________________________Description__________| │ │ │ │ │ -|file| io |(input,required)|name of the input file to load from.. For | │ │ │ │ │ +|file| io |(required,input)|name of the input file to load from.. For | │ │ │ │ │ |____|____|________________|supported_file_types_see_Plugin_type:_2dimage/io| │ │ │ │ │ mask │ │ │ │ │ 2D masking, one of the two input images must by of type bit.. Supported │ │ │ │ │ parameters are: │ │ │ │ │ ____________________________________________________________________________ │ │ │ │ │ |__Name_|Type|______Default___|__________________________Description_________| │ │ │ │ │ | fill |dict| min | _________________________________________ | │ │ │ │ │ | | | ||fill_style_for_pixels_outside_of_the_mask| | │ │ │ │ │ | | | ||min: |set values outside the mask to the | | │ │ │ │ │ | | | ||_____|minimum_value_found_in_the_image.__| | │ │ │ │ │ | | | ||zero:|set the values outside the mask to | | │ │ │ │ │ | | | ||_____|zero.______________________________| | │ │ │ │ │ | | | ||max: |set values outside the mask to the | | │ │ │ │ │ |_______|____|________________||_____|maximum_value_found_in_the_image.._|___| │ │ │ │ │ -| input | io |(input,required)|second input image file name. For supported | │ │ │ │ │ +| input | io |(required,input)|second input image file name. For supported | │ │ │ │ │ |_______|____|________________|file_types_see_Plugin_type:_2dimage/io________| │ │ │ │ │ |inverse|bool| 0 |set to true to use the inverse of the mask for| │ │ │ │ │ |_______|____|________________|masking_______________________________________| │ │ │ │ │ maxflow │ │ │ │ │ This filter implements the uses the max-flow min-cut algorithmfor image │ │ │ │ │ segmentation. Supported parameters are: │ │ │ │ │ _____________________________________________________________________________ │ │ │ │ │ |_____Name__|Type|______Default___|________________________Description________| │ │ │ │ │ -| sink-flow | io |(input,required)|Image of float type to define the per-pixel| │ │ │ │ │ +| sink-flow | io |(required,input)|Image of float type to define the per-pixel| │ │ │ │ │ | | | |flow to the sink. For supported file types | │ │ │ │ │ |___________|____|________________|see_Plugin_type:_2dimage/io________________| │ │ │ │ │ -|source-flow| io |(input,required)|Image of float type to define the per-pixel| │ │ │ │ │ +|source-flow| io |(required,input)|Image of float type to define the per-pixel| │ │ │ │ │ | | | |flow to the source. For supported file | │ │ │ │ │ |___________|____|________________|types_see_Plugin_type:_2dimage/io__________| │ │ │ │ │ mean │ │ │ │ │ 2D image mean filter. Supported parameters are: │ │ │ │ │ ______________________________________________ │ │ │ │ │ |Name|________Type___|Default|____Description__| │ │ │ │ │ |__w_|int_in_[1,_inf)|____1__|half_filter_width| │ │ │ │ │ @@ -309,15 +309,15 @@ │ │ │ │ │ regiongrow │ │ │ │ │ Region growing startin from a seed until only along increasing gradients. │ │ │ │ │ Supported parameters are: │ │ │ │ │ ____________________________________________________________________________ │ │ │ │ │ |Name|__Type_|______Default___|__________________________Description_________| │ │ │ │ │ | n |factory| 8n |Neighborhood shape. For supported plug-ins see| │ │ │ │ │ |____|_______|________________|Plugin_type:_2dimage/shape____________________| │ │ │ │ │ -|seed| io |(input,required)|seed image (bit valued). For supported file | │ │ │ │ │ +|seed| io |(required,input)|seed image (bit valued). For supported file | │ │ │ │ │ |____|_______|________________|types_see_Plugin_type:_2dimage/io_____________| │ │ │ │ │ sandp │ │ │ │ │ salt and pepper 3d filter. Supported parameters are: │ │ │ │ │ _______________________________________________________ │ │ │ │ │ |_Name_|_________Type____|Default|________Description___| │ │ │ │ │ |thresh|float_in_(0,_inf)|___100_|thresh_value__________| │ │ │ │ │ |___w__|_int_in_[1,_inf)_|____1__|filter_width_parameter| │ │ │ │ │ @@ -373,15 +373,15 @@ │ │ │ │ │ |Name|__Type_|______Default___|___________________________Description_________| │ │ │ │ │ |grad|__bool_|___________0____|Interpret_the_input_image_as_gradient._________| │ │ │ │ │ |mark| bool | 0 |Mark the segmented watersheds with a special | │ │ │ │ │ |____|_______|________________|gray_scale_value_______________________________| │ │ │ │ │ | n |factory| [sphere:r=1] |Neighborhood for watershead region growing. For| │ │ │ │ │ | | | |supported plug-ins see Plugin_type:_2dimage/ | │ │ │ │ │ |____|_______|________________|shape__________________________________________| │ │ │ │ │ -|seed|string |(input,required)|seed input image containing the lables for the | │ │ │ │ │ +|seed|string |(required,input)|seed input image containing the lables for the | │ │ │ │ │ |____|_______|________________|initial_regions________________________________| │ │ │ │ │ tee │ │ │ │ │ Save the input image to a file and also pass it through to the next filter. │ │ │ │ │ Supported parameters are: │ │ │ │ │ ___________________________________________________________________________ │ │ │ │ │ |Name|Type|_______Default___|___________________________Description_________| │ │ │ │ │ |file| io |(required,output)|name of the output file to save the image too..| │ │ │ │ │ @@ -413,15 +413,15 @@ │ │ │ │ │ |__t_|_______float___|____0__|Threshold_for_pixels_not_to_take_into_account| │ │ │ │ │ |__w_|int_in_[1,_inf)|____1__|half_filter_width____________________________| │ │ │ │ │ transform │ │ │ │ │ Transform the input image with the given transformation.. Supported parameters │ │ │ │ │ are: │ │ │ │ │ ___________________________________________________________________________ │ │ │ │ │ |Name|Type|______Default___|___________________________Description__________| │ │ │ │ │ -|file| io |(input,required)|Name of the file containing the transformation..| │ │ │ │ │ +|file| io |(required,input)|Name of the file containing the transformation..| │ │ │ │ │ | | | |For supported file types see Plugin_type: | │ │ │ │ │ |____|____|________________|2dtransform/io__________________________________| │ │ │ │ │ ws │ │ │ │ │ basic watershead segmentation.. Supported parameters are: │ │ │ │ │ ____________________________________________________________________________ │ │ │ │ │ |___Name_|________Type___|___Default__|____________________Description_______| │ │ │ │ │ |evalgrad| bool | 0 |Set to 1 if the input image does not | │ │ │ ├── ./usr/share/doc/mia-2.4/userref/SecPlugintype2dstackfilter.html │ │ │ │ @@ -16,19 +16,19 @@ │ │ │ │
│ │ │ │
2D Stack morphological filter 'dilate'. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 6n | structuring element. For supported plug-ins see Plugin type: 3dimage/shape |
│ │ │ │
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2D Stack morphological filter 'erode'. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 6n | structuring element. For supported plug-ins see Plugin type: 3dimage/shape |
│ │ │ │
│ │ │ │
Gauss 2D fifo filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | filter width parameter (2*w+1) |
│ │ │ │
│ │ │ │ -
Stack Label filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
map | string | (input,required) | Mapfile to save label numbers that are joined |
n | factory | 4n | 2D neighbourhood shape to define connectedness. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │ +
Stack Label filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
map | string | (required,input) | Mapfile to save label numbers that are joined |
n | factory | 4n | 2D neighbourhood shape to define connectedness. For supported plug-ins see Plugin type: 2dimage/shape |
│ │ │ │
│ │ │ │
median 2D fifo filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
Mean of Least Variance 2D stack image filter. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
w | int in [1, inf) | 1 | filter width parameter |
│ │ │ │
│ │ │ │
2D Stack morphological filter 'open'. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
shape | factory | 6n | structuring element. For supported plug-ins see Plugin type: 3dimage/shape |
│ │ │ │
│ │ │ │ -
Run a region-growing filter on a stack of images that comprise a 3D image. The region growing is based on class probabilities obtained from a c-means classification of the pixel intensities. One seed thresh is use to initiate a region, and another (lower) threshold is used to stop the region growing. By holding a number of 3D slices in the working memory to permit the region to grow "backwards " in the stack a Quasi-3D processing is achieved. However, with complex structures the region growing may not properly be segmented.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
class | int in [0, inf) | 2 | class to be segmented |
depth | int in [1, inf) | 10 | number of slices to keep during processing |
low | float in (0, 1] | 0.5 | low threshold for acceptance probability |
map | string | (input,required) | seed class map |
seed | float in (0, 1] | 0.98 | threshold for seed probability |
│ │ │ │ +
Run a region-growing filter on a stack of images that comprise a 3D image. The region growing is based on class probabilities obtained from a c-means classification of the pixel intensities. One seed thresh is use to initiate a region, and another (lower) threshold is used to stop the region growing. By holding a number of 3D slices in the working memory to permit the region to grow "backwards " in the stack a Quasi-3D processing is achieved. However, with complex structures the region growing may not properly be segmented.. Supported parameters are:
Name | Type | Default | Description |
---|---|---|---|
class | int in [0, inf) | 2 | class to be segmented |
depth | int in [1, inf) | 10 | number of slices to keep during processing |
low | float in (0, 1] | 0.5 | low threshold for acceptance probability |
map | string | (required,input) | seed class map |
seed | float in (0, 1] | 0.98 | threshold for seed probability |
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│ │ │ │ mia-2dstackfilter │ │ │ │