Diff of the two buildlogs: -- --- b1/build.log 2023-05-02 01:59:15.982399628 +0000 +++ b2/build.log 2023-05-02 02:03:36.186994929 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 2 20:20:19 -12 2024 -I: pbuilder-time-stamp: 1717402819 +I: Current time: Tue May 2 15:59:17 +14 2023 +I: pbuilder-time-stamp: 1682992757 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./htslib_1.16+ds.orig.tar.bz2] I: copying [./htslib_1.16+ds-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Oct 19 08:47:31 2022 -12 +gpgv: Signature made Thu Oct 20 10:47:31 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -35,135 +35,167 @@ dpkg-source: info: applying trim-file-prefix.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1097490/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1980210/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 2 15:59 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1980210/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1980210/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='6d321ef21c194503b0ac2b3093553d79' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1097490' - PS1='# ' - PS2='> ' + INVOCATION_ID=9922633dfe8d4676baf52b4ec4408359 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1980210 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.trjDVbyQ/pbuilderrc_jmuI --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.trjDVbyQ/b1 --logfile b1/build.log htslib_1.16+ds-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.trjDVbyQ/pbuilderrc_d8JT --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.trjDVbyQ/b2 --logfile b2/build.log --extrapackages usrmerge htslib_1.16+ds-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1097490/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 11:23 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:23 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 2 15:59 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1980210/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -261,7 +293,7 @@ Get: 46 http://deb.debian.org/debian bookworm/main amd64 liblzma-dev amd64 5.4.1-0.2 [260 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libssl-dev amd64 3.0.8-1 [2427 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] -Fetched 27.2 MB in 0s (81.4 MB/s) +Fetched 27.2 MB in 1s (29.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -467,8 +499,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/htslib-1.16+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htslib_1.16+ds-3_source.changes +I: user script /srv/workspace/pbuilder/1980210/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/1980210/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/htslib-1.16+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htslib_1.16+ds-3_source.changes dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.16+ds-3 dpkg-buildpackage: info: source distribution unstable @@ -481,11 +524,11 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/htslib-1.16+ds' dh_auto_clean - make -j16 distclean + make -j15 distclean make[2]: Entering directory '/build/htslib-1.16+ds' rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt -rm -f libhts.so libhts.so.* rm -rf htscodecs/tests/test.out +rm -f libhts.so libhts.so.* rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM config_vars.h version.h rm -f htscodecs/htscodecs/*.o htscodecs/htscodecs/*.pico rm -f hts-object-files @@ -547,7 +590,7 @@ checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib -checking for grep that handles long lines and -e... /bin/grep +checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... yes checking whether C compiler accepts -mavx2... yes @@ -613,7 +656,7 @@ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.16" \ libdir=/usr/lib/x86_64-linux-gnu - make -j16 "CFLAGS=-g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.16 libdir=/usr/lib/x86_64-linux-gnu + make -j15 "CFLAGS=-g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.16 libdir=/usr/lib/x86_64-linux-gnu make[2]: Entering directory '/build/htslib-1.16+ds' gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c @@ -625,19 +668,19 @@ gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.16"' > version.h echo '#define HTS_CC "gcc"' > config_vars.h -gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_expr.o hts_expr.c echo '#define HTS_CPPFLAGS "-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2"' >> config_vars.h -gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c -gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c +gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_expr.o hts_expr.c echo '#define HTS_CFLAGS "-g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects"' \ | sed 's/-ffile-prefix-map=[^ ]*=.//' \ >> config_vars.h +gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c +gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c +echo '#define HTS_LDFLAGS "-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic"' >> config_vars.h gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c +echo '#define HTS_LIBS "-ldeflate -lhtscodecs -llzma -lbz2 -lz -lm "' >> config_vars.h gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c -echo '#define HTS_LDFLAGS "-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic"' >> config_vars.h -echo '#define HTS_LIBS "-ldeflate -lhtscodecs -llzma -lbz2 -lz -lm "' >> config_vars.h gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c gcc -g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c @@ -743,12 +786,6 @@ gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o -gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread -ln -sf libhts.so libhts.so.3 -gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread -gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread -gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lpthread -gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o plugin.o ranlib libhts.a gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread @@ -775,6 +812,12 @@ gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread +gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread +ln -sf libhts.so libhts.so.3 +gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread +gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread +gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lpthread +gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf_set_variant_type test/test-bcf_set_variant_type.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread make[2]: Leaving directory '/build/htslib-1.16+ds' make[1]: Leaving directory '/build/htslib-1.16+ds' @@ -790,7 +833,7 @@ if find . -name "FAIL*" > /dev/null ; then \ for file in $(find . -name "FAIL*"); do echo ${file}; cat ${file}; done && false ; \ fi - make -j16 test "TESTSUITEFLAGS=-j16 --verbose" VERBOSE=1 "CFLAGS=-g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.16 libdir=/usr/lib/x86_64-linux-gnu + make -j15 test "TESTSUITEFLAGS=-j15 --verbose" VERBOSE=1 "CFLAGS=-g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.16 libdir=/usr/lib/x86_64-linux-gnu make[2]: Entering directory '/build/htslib-1.16+ds' test/hts_endian test/test_expr @@ -980,203 +1023,203 @@ bgzip -b -I 4 threads: .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -b -m 14 -x /tmp/6odlocUR40/index.bam.csi /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.bam + /build/htslib-1.16+ds/test/test_view -l 0 -b -m 14 -x /tmp/7RYAmp8w04/index.bam.csi /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.bam .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.bam + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.bam .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -b -m 0 -x /tmp/6odlocUR40/index.bam.bai /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.bam + /build/htslib-1.16+ds/test/test_view -l 0 -b -m 0 -x /tmp/7RYAmp8w04/index.bam.bai /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.bam .. ok test_index: - /build/htslib-1.16+ds/test/test_index -b /tmp/6odlocUR40/index.bam + /build/htslib-1.16+ds/test/test_index -b /tmp/7RYAmp8w04/index.bam .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/6odlocUR40/index.sam.gz.csi /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/7RYAmp8w04/index.sam.gz.csi /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/6odlocUR40/index.sam.gz.bai /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/7RYAmp8w04/index.sam.gz.bai /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -b /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_index -b /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/6odlocUR40/index.sam.gz.csi /build/htslib-1.16+ds/test/index_dos.sam > /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/7RYAmp8w04/index.sam.gz.csi /build/htslib-1.16+ds/test/index_dos.sam > /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/6odlocUR40/index.sam.gz.bai /build/htslib-1.16+ds/test/index_dos.sam > /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/7RYAmp8w04/index.sam.gz.bai /build/htslib-1.16+ds/test/index_dos.sam > /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -b /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_index -b /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -C -x /tmp/6odlocUR40/index.cram.crai /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.cram + /build/htslib-1.16+ds/test/test_view -l 0 -C -x /tmp/7RYAmp8w04/index.cram.crai /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.cram .. ok test_index: - /build/htslib-1.16+ds/test/test_index /tmp/6odlocUR40/index.cram + /build/htslib-1.16+ds/test/test_index /tmp/7RYAmp8w04/index.cram .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -b -m 14 -x /tmp/6odlocUR40/index.bcf.csi /build/htslib-1.16+ds/test/index.vcf > /tmp/6odlocUR40/index.bcf + /build/htslib-1.16+ds/test/test_view -l 0 -b -m 14 -x /tmp/7RYAmp8w04/index.bcf.csi /build/htslib-1.16+ds/test/index.vcf > /tmp/7RYAmp8w04/index.bcf .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.bcf + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.bcf .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/6odlocUR40/index.vcf.gz.csi /build/htslib-1.16+ds/test/index.vcf > /tmp/6odlocUR40/index.vcf.gz + /build/htslib-1.16+ds/test/test_view -l 0 -z -m 14 -x /tmp/7RYAmp8w04/index.vcf.gz.csi /build/htslib-1.16+ds/test/index.vcf > /tmp/7RYAmp8w04/index.vcf.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.vcf.gz + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.vcf.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/6odlocUR40/index.vcf.gz.tbi /build/htslib-1.16+ds/test/index.vcf > /tmp/6odlocUR40/index.vcf.gz + /build/htslib-1.16+ds/test/test_view -l 0 -z -m 0 -x /tmp/7RYAmp8w04/index.vcf.gz.tbi /build/htslib-1.16+ds/test/index.vcf > /tmp/7RYAmp8w04/index.vcf.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -t /tmp/6odlocUR40/index.vcf.gz + /build/htslib-1.16+ds/test/test_index -t /tmp/7RYAmp8w04/index.vcf.gz .. ok test_index: - /build/htslib-1.16+ds/tabix /tmp/6odlocUR40/index.vcf.gz##idx##/tmp/6odlocUR40/index.vcf.gz.tbi 1:10000060-10000060 + /build/htslib-1.16+ds/tabix /tmp/7RYAmp8w04/index.vcf.gz##idx##/tmp/7RYAmp8w04/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/htslib-1.16+ds/test/test_view /tmp/6odlocUR40/index2.bam 1:1000000-1000000 + /build/htslib-1.16+ds/test/test_view /tmp/7RYAmp8w04/index2.bam 1:1000000-1000000 .. ok test_index: - /build/htslib-1.16+ds/test/test_view /tmp/6odlocUR40/index2.bam 1:2000000-2000000 + /build/htslib-1.16+ds/test/test_view /tmp/7RYAmp8w04/index2.bam 1:2000000-2000000 .. ok test_index: - /build/htslib-1.16+ds/test/test_view /tmp/6odlocUR40/index2.bam 2:1000000-1000000 + /build/htslib-1.16+ds/test/test_view /tmp/7RYAmp8w04/index2.bam 2:1000000-1000000 .. ok test_index: - /build/htslib-1.16+ds/test/test_view /tmp/6odlocUR40/index2.bam 2:2000000-2000000 + /build/htslib-1.16+ds/test/test_view /tmp/7RYAmp8w04/index2.bam 2:2000000-2000000 .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/6odlocUR40/index.bam.csi /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.bam + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/7RYAmp8w04/index.bam.csi /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.bam .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.bam + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.bam .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/6odlocUR40/index.bam.bai /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.bam + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/7RYAmp8w04/index.bam.bai /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.bam .. ok test_index: - /build/htslib-1.16+ds/test/test_index -b /tmp/6odlocUR40/index.bam + /build/htslib-1.16+ds/test/test_index -b /tmp/7RYAmp8w04/index.bam .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/6odlocUR40/index.sam.gz.csi /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/7RYAmp8w04/index.sam.gz.csi /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/6odlocUR40/index.sam.gz.bai /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/7RYAmp8w04/index.sam.gz.bai /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -b /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_index -b /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/6odlocUR40/index.sam.gz.csi /build/htslib-1.16+ds/test/index_dos.sam > /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/7RYAmp8w04/index.sam.gz.csi /build/htslib-1.16+ds/test/index_dos.sam > /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/6odlocUR40/index.sam.gz.bai /build/htslib-1.16+ds/test/index_dos.sam > /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/7RYAmp8w04/index.sam.gz.bai /build/htslib-1.16+ds/test/index_dos.sam > /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -b /tmp/6odlocUR40/index.sam.gz + /build/htslib-1.16+ds/test/test_index -b /tmp/7RYAmp8w04/index.sam.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -C -x /tmp/6odlocUR40/index.cram.crai /build/htslib-1.16+ds/test/index.sam > /tmp/6odlocUR40/index.cram + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -C -x /tmp/7RYAmp8w04/index.cram.crai /build/htslib-1.16+ds/test/index.sam > /tmp/7RYAmp8w04/index.cram .. ok test_index: - /build/htslib-1.16+ds/test/test_index /tmp/6odlocUR40/index.cram + /build/htslib-1.16+ds/test/test_index /tmp/7RYAmp8w04/index.cram .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/6odlocUR40/index.bcf.csi /build/htslib-1.16+ds/test/index.vcf > /tmp/6odlocUR40/index.bcf + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/7RYAmp8w04/index.bcf.csi /build/htslib-1.16+ds/test/index.vcf > /tmp/7RYAmp8w04/index.bcf .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.bcf + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.bcf .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/6odlocUR40/index.vcf.gz.csi /build/htslib-1.16+ds/test/index.vcf > /tmp/6odlocUR40/index.vcf.gz + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/7RYAmp8w04/index.vcf.gz.csi /build/htslib-1.16+ds/test/index.vcf > /tmp/7RYAmp8w04/index.vcf.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -c /tmp/6odlocUR40/index.vcf.gz + /build/htslib-1.16+ds/test/test_index -c /tmp/7RYAmp8w04/index.vcf.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/6odlocUR40/index.vcf.gz.tbi /build/htslib-1.16+ds/test/index.vcf > /tmp/6odlocUR40/index.vcf.gz + /build/htslib-1.16+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/7RYAmp8w04/index.vcf.gz.tbi /build/htslib-1.16+ds/test/index.vcf > /tmp/7RYAmp8w04/index.vcf.gz .. ok test_index: - /build/htslib-1.16+ds/test/test_index -t /tmp/6odlocUR40/index.vcf.gz + /build/htslib-1.16+ds/test/test_index -t /tmp/7RYAmp8w04/index.vcf.gz .. ok test_index: - /build/htslib-1.16+ds/tabix /tmp/6odlocUR40/index.vcf.gz##idx##/tmp/6odlocUR40/index.vcf.gz.tbi 1:10000060-10000060 + /build/htslib-1.16+ds/tabix /tmp/7RYAmp8w04/index.vcf.gz##idx##/tmp/7RYAmp8w04/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/htslib-1.16+ds/test/test_view /tmp/6odlocUR40/index2.bam 1:1000000-1000000 + /build/htslib-1.16+ds/test/test_view /tmp/7RYAmp8w04/index2.bam 1:1000000-1000000 .. ok test_index: - /build/htslib-1.16+ds/test/test_view /tmp/6odlocUR40/index2.bam 1:2000000-2000000 + /build/htslib-1.16+ds/test/test_view /tmp/7RYAmp8w04/index2.bam 1:2000000-2000000 .. ok test_index: - /build/htslib-1.16+ds/test/test_view /tmp/6odlocUR40/index2.bam 2:1000000-1000000 + /build/htslib-1.16+ds/test/test_view /tmp/7RYAmp8w04/index2.bam 2:1000000-1000000 .. ok test_index: - /build/htslib-1.16+ds/test/test_view /tmp/6odlocUR40/index2.bam 2:2000000-2000000 + /build/htslib-1.16+ds/test/test_view /tmp/7RYAmp8w04/index2.bam 2:2000000-2000000 .. ok test_view testing multi-ref CRAM modes: @@ -2850,10 +2893,10 @@ .. ok test_vcf_api: - /build/htslib-1.16+ds/test/test-vcf-api /tmp/6odlocUR40/test-vcf-api.bcf + /build/htslib-1.16+ds/test/test-vcf-api /tmp/7RYAmp8w04/test-vcf-api.bcf [W::bcf_record_check] Bad BCF record at 1:1: No REF allele [E::bcf_index_build3] TBI indices for BCF files are not supported -[E::idx_find_and_load] Could not retrieve index file for '/tmp/6odlocUR40/test-vcf-api.bcf' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/7RYAmp8w04/test-vcf-api.bcf' .. ok test_bcf2vcf: @@ -2861,7 +2904,7 @@ .. ok test_vcf_sweep: - /build/htslib-1.16+ds/test/test-vcf-sweep /tmp/6odlocUR40/test-vcf-api.bcf + /build/htslib-1.16+ds/test/test-vcf-sweep /tmp/7RYAmp8w04/test-vcf-api.bcf .. ok test_vcf_various: @@ -2885,43 +2928,43 @@ .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 74452500 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 74452500 .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 34270147 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 34270147 .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 11108528 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 11108528 .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 42233895 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 42233895 .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 8111117 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 8111117 .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 85644070 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 85644070 .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 49879942 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 49879942 .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 47881429 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 47881429 .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 69081244 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 69081244 .. ok test-bcf-sr: - /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/6odlocUR40 -s 83459376 + /build/htslib-1.16+ds/test/test-bcf-sr.pl -t /tmp/7RYAmp8w04 -s 83459376 .. ok test_command: @@ -2929,15 +2972,15 @@ .. ok test_convert_padded_header: - /build/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/6odlocUR40/headernul0.bam + /build/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/7RYAmp8w04/headernul0.bam .. ok test_convert_padded_header: - /build/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/6odlocUR40/headernul1.bam + /build/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/7RYAmp8w04/headernul1.bam .. ok test_convert_padded_header: - /build/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/6odlocUR40/headernul678.bam + /build/htslib-1.16+ds/test/test_view -t ce.fa -C /tmp/7RYAmp8w04/headernul678.bam .. ok test_rebgzip: Alternate zlib/deflate library detected @@ -3000,7 +3043,7 @@ failed .. 0 make[2]: Leaving directory '/build/htslib-1.16+ds' - rm -fr -- /tmp/dh-xdg-rundir-VUmqGN8H + rm -fr -- /tmp/dh-xdg-rundir-dtUZdT4s make[1]: Leaving directory '/build/htslib-1.16+ds' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_test-indep @@ -3023,14 +3066,14 @@ PACKAGE_VERSION="1.16" \ libdir=/usr/lib/x86_64-linux-gnu install -m0755 -d /build/htslib-1.16\+ds/debian/tmp - make -j16 install DESTDIR=/build/htslib-1.16\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.16 libdir=/usr/lib/x86_64-linux-gnu + make -j15 install DESTDIR=/build/htslib-1.16\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -ffile-prefix-map=/build/htslib-1.16+ds=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.16 libdir=/usr/lib/x86_64-linux-gnu make[2]: Entering directory '/build/htslib-1.16+ds' mkdir -p -m 755 /build/htslib-1.16+ds/debian/tmp/usr/bin /build/htslib-1.16+ds/debian/tmp/usr/include /build/htslib-1.16+ds/debian/tmp/usr/include/htslib /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu /build/htslib-1.16+ds/debian/tmp/usr/share/man/man1 /build/htslib-1.16+ds/debian/tmp/usr/share/man/man5 /build/htslib-1.16+ds/debian/tmp/usr/share/man/man7 /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig if test -n "/usr/lib/x86_64-linux-gnu/htslib"; then mkdir -p -m 755 /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu/htslib; fi install -p -m 644 libhts.so /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.16 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/x86_64-linux-gnu#g;s#@-PACKAGE_VERSION@#1.16#g' htslib.pc.tmp > /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc -chmod 644 /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc ln -sf libhts.so.1.16 /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so +chmod 644 /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc ln -sf libhts.so.1.16 /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.3 install -p bgzip htsfile tabix /build/htslib-1.16+ds/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /build/htslib-1.16+ds/debian/tmp/usr/lib/x86_64-linux-gnu/htslib; fi @@ -3104,15 +3147,15 @@ install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog - install -m0755 -d debian/libhts3/usr/share/doc/libhts3 - install -p -m0644 debian/.debhelper/generated/libhts3/dh_installchangelogs.dch.trimmed debian/libhts3/usr/share/doc/libhts3/changelog.Debian - install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog install -m0755 -d debian/htslib-test/usr/share/doc/htslib-test install -p -m0644 debian/.debhelper/generated/htslib-test/dh_installchangelogs.dch.trimmed debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog + install -m0755 -d debian/libhts3/usr/share/doc/libhts3 + install -p -m0644 debian/.debhelper/generated/libhts3/dh_installchangelogs.dch.trimmed debian/libhts3/usr/share/doc/libhts3/changelog.Debian + install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog make[1]: Leaving directory '/build/htslib-1.16+ds' dh_installman install -m0755 -d debian/libhts3/usr/share/man/man7/ @@ -3123,27 +3166,27 @@ install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/faidx.5 - man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/sam.5 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/vcf.5 - man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 + man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/faidx.5 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 + man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/sam.5 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/htsfile.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 - mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 - chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 - mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 - chmod 0644 -- debian/libhts3/usr/share/man/man5/sam.5 mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 chmod 0644 -- debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 - mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 - chmod 0644 -- debian/libhts3/usr/share/man/man5/vcf.5 + mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 + chmod 0644 -- debian/libhts3/usr/share/man/man5/sam.5 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1 - mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 - chmod 0644 -- debian/tabix/usr/share/man/man1/htsfile.1 + mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 + chmod 0644 -- debian/libhts3/usr/share/man/man5/vcf.5 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 + mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 + chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 + mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 + chmod 0644 -- debian/tabix/usr/share/man/man1/htsfile.1 dh_lintian install -m0755 -d debian/htslib-test/usr/share/lintian/overrides install -p -m0644 debian/htslib-test.lintian-overrides debian/htslib-test/usr/share/lintian/overrides/htslib-test @@ -3162,18 +3205,18 @@ dh_strip_nondeterminism dh_compress cd debian/libhts3 - cd debian/libhts-dev - cd debian/htslib-test cd debian/tabix - chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian - chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian + cd debian/htslib-test + cd debian/libhts-dev chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 - chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 - gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian - gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 + chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/build/htslib-1.16+ds' + gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian + gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian cd '/build/htslib-1.16+ds' cd '/build/htslib-1.16+ds' cd '/build/htslib-1.16+ds' @@ -3186,24 +3229,24 @@ find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/htslib-1.16+ds' rm -f debian/htslib-test.debhelper.log debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log @@ -3230,16 +3273,16 @@ dh_strip -Xlibhts.a install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/31 objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/x86_64-linux-gnu/libhts.so.1.16 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/31/c0046a3119d307dd7fb3280bc45c45c5fe4ccc.debug - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/e6 - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/e6/6b3d6cd9299d472d1bfd9dc0b33fcc407e26ed.debug - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/e6/6b3d6cd9299d472d1bfd9dc0b33fcc407e26ed.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/e6/6b3d6cd9299d472d1bfd9dc0b33fcc407e26ed.debug debian/tabix/usr/bin/htsfile + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ec + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ec/f0840ee5781cc14646dc6b307b6cbf7d023d4e.debug + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ec/f0840ee5781cc14646dc6b307b6cbf7d023d4e.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ec/f0840ee5781cc14646dc6b307b6cbf7d023d4e.debug debian/tabix/usr/bin/tabix chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/31/c0046a3119d307dd7fb3280bc45c45c5fe4ccc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/x86_64-linux-gnu/libhts.so.1.16 objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/31/c0046a3119d307dd7fb3280bc45c45c5fe4ccc.debug debian/libhts3/usr/lib/x86_64-linux-gnu/libhts.so.1.16 - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ec - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ec/f0840ee5781cc14646dc6b307b6cbf7d023d4e.debug + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/e6 + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/e6/6b3d6cd9299d472d1bfd9dc0b33fcc407e26ed.debug install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/ed7d9a9590673f3d342b245f25db13b134c773.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/6e/ed7d9a9590673f3d342b245f25db13b134c773.debug @@ -3267,9 +3310,9 @@ install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym install -m0755 -d debian/.debhelper/libhts3 - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ec/f0840ee5781cc14646dc6b307b6cbf7d023d4e.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ec/f0840ee5781cc14646dc6b307b6cbf7d023d4e.debug debian/tabix/usr/bin/tabix + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/e6/6b3d6cd9299d472d1bfd9dc0b33fcc407e26ed.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/e6/6b3d6cd9299d472d1bfd9dc0b33fcc407e26ed.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/cc/1fd2bd244feb6d7962af62af1152878fa4cf71.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/cc/1fd2bd244feb6d7962af62af1152878fa4cf71.debug @@ -3294,7 +3337,7 @@ rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/tabix/DEBIAN - dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix debian/tabix/usr/bin/bgzip + dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip install -m0755 -d debian/libhts3/DEBIAN dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/x86_64-linux-gnu/libhts.so.1.16 debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so dh_installdeb @@ -3304,47 +3347,47 @@ install -m0755 -d debian/htslib-test/DEBIAN install -m0755 -d debian/tabix/DEBIAN dh_gencontrol - install -m0755 -d debian/libhts-dev/DEBIAN - echo misc:Depends= >> debian/libhts-dev.substvars - echo misc:Pre-Depends= >> debian/libhts-dev.substvars - dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev + install -m0755 -d debian/htslib-test/DEBIAN + echo misc:Depends= >> debian/htslib-test.substvars + echo misc:Pre-Depends= >> debian/htslib-test.substvars + dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -Pdebian/htslib-test install -m0755 -d debian/libhts3/DEBIAN echo misc:Depends= >> debian/libhts3.substvars echo misc:Pre-Depends= >> debian/libhts3.substvars install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" "-DBuild-Ids=0cda90fa488a94e89fe9dfa91c9e016903b6d6a1 129e9e505ddf6033f046fc3fb56169a56c415938 31c0046a3119d307dd7fb3280bc45c45c5fe4ccc 615e51c67ffeef4b340e21bc3091a562514ea377 6eed7d9a9590673f3d342b245f25db13b134c773" -DSection=debug -UReplaces -UBreaks + install -m0755 -d debian/libhts-dev/DEBIAN + echo misc:Depends= >> debian/libhts-dev.substvars + echo misc:Pre-Depends= >> debian/libhts-dev.substvars + dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev install -m0755 -d debian/tabix/DEBIAN echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=cc1fd2bd244feb6d7962af62af1152878fa4cf71 e66b3d6cd9299d472d1bfd9dc0b33fcc407e26ed ecf0840ee5781cc14646dc6b307b6cbf7d023d4e" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - install -m0755 -d debian/htslib-test/DEBIAN - echo misc:Depends= >> debian/htslib-test.substvars - echo misc:Pre-Depends= >> debian/htslib-test.substvars - dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -Pdebian/htslib-test chmod 0644 -- debian/libhts-dev/DEBIAN/control - chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control - dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 - chmod 0644 -- debian/htslib-test/DEBIAN/control chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix - chmod 0644 -- debian/libhts3/DEBIAN/control + chmod 0644 -- debian/htslib-test/DEBIAN/control + chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control + dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 chmod 0644 -- debian/tabix/DEBIAN/control + chmod 0644 -- debian/libhts3/DEBIAN/control dh_md5sums install -m0755 -d debian/libhts3/DEBIAN install -m0755 -d debian/tabix/DEBIAN install -m0755 -d debian/libhts-dev/DEBIAN install -m0755 -d debian/htslib-test/DEBIAN - cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN - cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums @@ -3356,12 +3399,12 @@ dpkg-deb --root-owner-group --build debian/htslib-test .. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. +dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.16+ds-3_amd64.deb'. dpkg-deb: building package 'libhts3' in '../libhts3_1.16+ds-3_amd64.deb'. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.16+ds-3_amd64.deb'. dpkg-deb: building package 'htslib-test' in '../htslib-test_1.16+ds-3_all.deb'. -dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.16+ds-3_amd64.deb'. -dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.16+ds-3_amd64.deb'. dpkg-deb: building package 'tabix' in '../tabix_1.16+ds-3_amd64.deb'. +dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.16+ds-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../htslib_1.16+ds-3_amd64.buildinfo dpkg-genchanges --build=binary -O../htslib_1.16+ds-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3370,12 +3413,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1980210/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1980210/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1097490 and its subdirectories -I: Current time: Sun Jun 2 20:22:16 -12 2024 -I: pbuilder-time-stamp: 1717402936 +I: removing directory /srv/workspace/pbuilder/1980210 and its subdirectories +I: Current time: Tue May 2 16:03:35 +14 2023 +I: pbuilder-time-stamp: 1682993015