Diff of the two buildlogs: -- --- b1/build.log 2023-05-13 08:59:02.396963049 +0000 +++ b2/build.log 2023-05-13 09:24:44.653329541 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 12 20:23:29 -12 2023 -I: pbuilder-time-stamp: 1683966209 +I: Current time: Sat Jun 15 05:22:09 +14 2024 +I: pbuilder-time-stamp: 1718378529 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./mmseqs2_14-7e284+ds.orig.tar.xz] I: copying [./mmseqs2_14-7e284+ds-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Nov 24 00:19:00 2022 -12 +gpgv: Signature made Fri Nov 25 02:19:00 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,167 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1544095/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2463580/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 15 05:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2463580/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2463580/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d7ecd6ccdb83429f88767854142b5874' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1544095' - PS1='# ' - PS2='> ' + INVOCATION_ID=545cdb7a5bff4f2eb3fb9457f0e732f5 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2463580 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fjZHGZWY/pbuilderrc_RaW9 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fjZHGZWY/b1 --logfile b1/build.log mmseqs2_14-7e284+ds-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fjZHGZWY/pbuilderrc_DXyI --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fjZHGZWY/b2 --logfile b2/build.log --extrapackages usrmerge mmseqs2_14-7e284+ds-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1544095/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jun 15 05:22 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/2463580/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -263,7 +295,7 @@ Get: 53 http://deb.debian.org/debian bookworm/main amd64 libxxhash-dev amd64 0.8.1-1 [66.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libzstd-dev amd64 1.5.4+dfsg2-5 [354 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] -Fetched 34.1 MB in 1s (25.3 MB/s) +Fetched 34.1 MB in 1s (34.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -497,8 +529,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/mmseqs2-14-7e284+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_14-7e284+ds-1_source.changes +I: user script /srv/workspace/pbuilder/2463580/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/2463580/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/mmseqs2-14-7e284+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_14-7e284+ds-1_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 14-7e284+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -845,7 +888,7 @@ make[1]: Entering directory '/build/mmseqs2-14-7e284+ds' mkdir -p /build/mmseqs2-14-7e284+ds/debian/mmseqs2/usr/bin dh_auto_build --builddirectory build_avx2 && dh_auto_build --builddirectory build_avx && dh_auto_build --builddirectory build_sse4.1 && dh_auto_build --builddirectory build_ssse3 && dh_auto_build --builddirectory build_sse3 && true - cd build_avx2 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-14-7e284+ds/build_avx2/CMakeFiles /build/mmseqs2-14-7e284+ds/build_avx2//CMakeFiles/progress.marks @@ -853,151 +896,171 @@ make[3]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/lib/microtar /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/lib/microtar /build/mmseqs2-14-7e284+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/lib/cacode /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/lib/cacode /build/mmseqs2-14-7e284+ds/build_avx2/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' -cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/lib/alp /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp 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-ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide.out -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out +cd /build/mmseqs2-14-7e284+ds/build_avx2/src/version && /usr/bin/c++ -DGIT_SHA1=14-7e284+ds-1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-14-7e284+ds/src/version/Version.cpp +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML80.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML80.out.h +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h.tmp -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h.tmp -/usr/bin/ranlib libversion.a +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h.tmp +[ 8%] Generating ../generated/blosum62.out.h +[ 8%] Linking CXX static library libversion.a cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out +cd /build/mmseqs2-14-7e284+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_sim.cpp +cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp -[ 8%] Built target version -[ 8%] Generating ../generated/PAM30.out.h -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out -[ 8%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/mmseqs2-14-7e284+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +[ 9%] Generating ../generated/PAM30.out.h +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +/usr/bin/ranlib libversion.a +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h.tmp +[ 9%] Built target version +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h -[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 10%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -[ 11%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp +[ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +[ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp [ 12%] Linking C static library libmicrotar.a cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 13%] Generating ../generated/libPolished_8.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h /usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 13%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib +[ 13%] Built target microtar +[ 14%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib +[ 15%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib +cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h.tmp +[ 16%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; @@ -1033,223 +1096,203 @@ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h.tmp -[ 14%] Generating ../generated/cs219.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h -[ 14%] Built target microtar -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp -[ 15%] Generating ../generated/krona_prelude.html.h -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h -[ 16%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h [ 16%] Generating ../generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_avx2/generated/K4000.crf.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h [ 16%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h [ 17%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h [ 18%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h [ 18%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h [ 19%] Generating ../generated/blastp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h +[ 19%] Built target cacode +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp [ 19%] Generating ../generated/blastpgp.sh.h +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h -[ 20%] Linking C static library libtinyexpr.a -cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h -cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -[ 21%] Generating ../generated/map.sh.h +[ 20%] Generating ../generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -/usr/bin/ranlib libtinyexpr.a +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h.tmp -[ 21%] Built target tinyexpr -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp -[ 21%] Generating ../generated/rbh.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h.tmp +[ 20%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh +[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h +cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h.tmp -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h -[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' -[ 22%] Generating ../generated/linclust.sh.h -[ 22%] Built target cacode +[ 21%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h -[ 22%] Generating ../generated/clustering.sh.h +[ 21%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h +[ 22%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h.tmp [ 22%] Generating ../generated/cascaded_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -[ 22%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' +[ 22%] Generating ../generated/update_clustering.sh.h [ 22%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh [ 23%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh +[ 23%] Built target tinyexpr +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h.tmp [ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h [ 24%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh -[ 24%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh [ 24%] Generating ../generated/multihitdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h.tmp +[ 24%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh [ 25%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h [ 25%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h [ 25%] Generating ../generated/blastn.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h.tmp +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -[ 26%] Generating ../generated/taxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh -[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +[ 26%] Generating ../generated/linsearch.sh.h +[ 27%] Generating ../generated/taxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -[ 27%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h.tmp [ 27%] Generating ../generated/databases.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h -[ 29%] Generating ../generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h.tmp +[ 29%] Generating ../generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl iterativepp.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h.tmp [ 29%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h > 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src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o @@ -1515,9 +1558,9 @@ cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx2/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy 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src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/cpmvrmlndb.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx2/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/sequence2profile.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx2/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/sortresult.cpp @@ -1614,168 +1657,184 @@ make[3]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-14-7e284+ds/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' - cd build_avx && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-14-7e284+ds/build_avx/CMakeFiles /build/mmseqs2-14-7e284+ds/build_avx//CMakeFiles/progress.marks make -f 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C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +[ 5%] Generating ../generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/build_avx/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c -[ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true VTML80.out +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true VTML40.out +[ 5%] Generating ../generated/nucleotide.out.h +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide.out -[ 5%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -[ 5%] Generating ../generated/PAM30.out.h -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT 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src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-14-7e284+ds/src/version/Version.cpp +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o 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/build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_avx/generated/blosum62.out.h -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h.tmp -[ 6%] Linking CXX static library libversion.a +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h +[ 7%] Linking CXX static library libversion.a +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h.tmp cd /build/mmseqs2-14-7e284+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blosum62.out.h.tmp -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h.tmp -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h.tmp 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/build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogprobproto.cpp +[ 8%] Generating ../generated/PAM30.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -[ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. 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/build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -[ 9%] Built target version -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong 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/build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd 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char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h -[ 11%] Generating ../generated/libPolished_8.lib.h -[ 12%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp +[ 12%] Linking C static library libmicrotar.a +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 13%] Generating ../generated/Library255_may17.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp +[ 14%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 15%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h.tmp +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h -[ 13%] Linking C static library libmicrotar.a -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -[ 14%] Generating ../generated/cs219.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib -[ 14%] Generating ../generated/krona_prelude.html.h +[ 15%] Built target microtar +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h.tmp +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +[ 16%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; @@ -1811,214 +1870,198 @@ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h.tmp -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp -[ 15%] Built target microtar -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp -[ 15%] Generating ../generated/result_viz_prelude.html.zst.h -[ 15%] Generating ../generated/K4000.crf.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h +[ 16%] Generating ../generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_avx/generated/K4000.crf.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h -[ 15%] Generating ../generated/easysearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +[ 16%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h -[ 16%] Generating ../generated/easycluster.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h +[ 17%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h.tmp -[ 17%] Generating ../generated/easytaxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h +[ 18%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h.tmp -[ 17%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h +[ 18%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h -[ 18%] Generating ../generated/blastp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h +[ 19%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h.tmp -[ 18%] Generating ../generated/blastpgp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp +[ 19%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h.tmp -[ 19%] Generating ../generated/map.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh +[ 20%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +[ 21%] Generating ../generated/map.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h -[ 19%] Generating ../generated/rbh.sh.h +[ 21%] Built target tinyexpr +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h +[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp +[ 22%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h.tmp -[ 20%] Linking C static library libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h -[ 20%] Generating ../generated/linclust.sh.h +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' +[ 22%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh +[ 22%] Built target cacode +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -[ 20%] Generating ../generated/clustering.sh.h +[ 22%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h.tmp +[ 22%] Generating ../generated/cascaded_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h.tmp +[ 22%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -[ 20%] Built target tinyexpr +[ 22%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp -[ 21%] Generating ../generated/cascaded_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h -[ 21%] Generating ../generated/update_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh -[ 21%] Built target cacode cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h -[ 21%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h -[ 22%] Generating ../generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h.tmp -[ 23%] Generating ../generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh +[ 23%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh [ 24%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +[ 24%] Generating ../generated/createtaxdb.sh.h [ 24%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h.tmp +[ 24%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h.tmp -[ 24%] Generating ../generated/multihitdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h [ 25%] Generating ../generated/multihitsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh [ 25%] Generating ../generated/enrich.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh [ 25%] Generating ../generated/blastn.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h.tmp [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h [ 27%] Generating ../generated/taxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -[ 27%] Generating ../generated/linsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h +[ 27%] Generating ../generated/linsearch.sh.h [ 27%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated [ 28%] Generating ../generated/nucleotide_clustering.sh.h -[ 29%] Generating ../generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh +[ 29%] Generating ../generated/iterativepp.sh.h [ 29%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl iterativepp.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h.tmp 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82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy 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/build/mmseqs2-14-7e284+ds/src/util/extractframes.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o @@ -2342,10 +2385,10 @@ cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering 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/build/mmseqs2-14-7e284+ds/lib/cacode/ludcmp.cpp +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c [ 4%] Generating ../generated/nucleotide.out.h -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode 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lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/cacode/nrutil.cpp +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time 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's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML40.out.h.tmp -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML80.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML80.out.h.tmp [ 7%] Linking CXX static library libversion.a cd /build/mmseqs2-14-7e284+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd 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/build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h.tmp -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide.out.h -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h -[ 7%] Generating 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-I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstat.cpp -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib 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/build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out +cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +[ 8%] Built target version +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h.tmp +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp +[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +[ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -[ 9%] Built target version -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 11%] Linking C static library libmicrotar.a +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_sim.cpp -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp -[ 10%] Generating ../generated/Library255_may17.lib.h +[ 13%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +/usr/bin/ranlib libmicrotar.a +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 11%] Generating ../generated/libPolished_8.lib.h +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +[ 13%] Built target microtar +[ 14%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp -[ 12%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h +[ 15%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h -[ 12%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp -[ 14%] Linking C static library libmicrotar.a +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h -[ 14%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -/usr/bin/ranlib libmicrotar.a -[ 14%] Generating ../generated/K4000.crf.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h.tmp +[ 16%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/K4000.crf.h -[ 14%] Built target microtar -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp -[ 15%] Generating ../generated/easysearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; @@ -2602,197 +2635,207 @@ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 16%] Generating ../generated/easycluster.sh.h -[ 17%] Generating ../generated/easytaxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h +[ 16%] Generating ../generated/K4000.crf.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +[ 16%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h +[ 17%] Generating ../generated/easycluster.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h +[ 18%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h -[ 17%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp +[ 18%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh -[ 18%] Generating ../generated/blastp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h -[ 18%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp +[ 20%] Generating ../generated/blastp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h +[ 20%] Built target cacode +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h +[ 20%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h -[ 19%] Generating ../generated/map.sh.h +[ 21%] Generating ../generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh -[ 19%] Generating ../generated/rbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -[ 19%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' +[ 21%] Generating ../generated/rbh.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +[ 21%] Generating ../generated/linclust.sh.h +[ 21%] Built target ksw2 cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h +[ 22%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h -[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp -[ 19%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h.tmp +[ 22%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +/usr/bin/ranlib libtinyexpr.a +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h -[ 19%] Generating ../generated/cascaded_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h.tmp +[ 22%] Built target tinyexpr cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h -[ 19%] Generating ../generated/update_clustering.sh.h +[ 22%] Generating ../generated/update_clustering.sh.h +[ 22%] Generating ../generated/cascaded_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h -[ 19%] Generating ../generated/searchtargetprofile.sh.h +[ 22%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h -[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h -[ 21%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp +[ 23%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -[ 21%] Generating ../generated/createtaxdb.sh.h -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +[ 23%] Generating ../generated/createtaxdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp +[ 24%] Generating ../generated/translated_search.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp +[ 24%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h -[ 22%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h -[ 23%] Linking C static library libtinyexpr.a -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -[ 23%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -[ 23%] Generating ../generated/multihitdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' +[ 24%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp +[ 25%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h -[ 23%] Built target tinyexpr +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h -[ 23%] Built target cacode -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h.tmp -[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -[ 24%] Generating ../generated/enrich.sh.h -cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp +[ 25%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h -[ 25%] Generating ../generated/multihitsearch.sh.h -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h [ 25%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh -[ 25%] Built target ksw2 -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h.tmp [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h [ 27%] Generating ../generated/taxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh -[ 27%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp [ 27%] Generating ../generated/linsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h.tmp +[ 27%] Generating ../generated/databases.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h [ 29%] Generating ../generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl iterativepp.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp [ 29%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f 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&& mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h.tmp -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h +cd 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unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/PAM30.out.h.tmp cd /build/mmseqs2-14-7e284+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h +cd /build/mmseqs2-14-7e284+ds/data && mv -f 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-I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h -[ 7%] Built target version -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -[ 8%] Generating ../generated/PAM30.out.h -cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out -[ 9%] Generating ../generated/blosum62.out.h -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out -cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/PAM30.out.h -cd 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/build/mmseqs2-14-7e284+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blosum62.out.h -cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -[ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstat.cpp +[ 7%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +[ 9%] Built target version +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -[ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 11%] Built target microtar +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -[ 12%] Building CXX object 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/build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp -cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 11%] Generating ../generated/Library255_may17.lib.h /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; @@ -3327,7 +3359,6 @@ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -[ 13%] Generating ../generated/Library255_may17.lib.h /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 446 | ret->value = NAN; | ^~ @@ -3337,226 +3368,238 @@ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib -[ 14%] Generating ../generated/libPolished_8.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp +[ 13%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp +[ 14%] Linking C static library libmicrotar.a +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h [ 15%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h [ 15%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +/usr/bin/ranlib libmicrotar.a +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' [ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +[ 16%] Built target microtar cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp [ 16%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h -[ 16%] Generating ../generated/easysearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h [ 16%] Generating ../generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h.tmp +[ 16%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h [ 17%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h [ 18%] Linking C static library libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h -cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o [ 19%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh -/usr/bin/ranlib libtinyexpr.a -[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h -[ 19%] Built target tinyexpr -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h +[ 19%] Built target cacode +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp -[ 19%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' +[ 19%] Built target ksw2 +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h +[ 19%] Built target tinyexpr +[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +[ 20%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +[ 21%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h -[ 20%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h -[ 20%] Generating ../generated/blastpgp.sh.h +[ 21%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h -[ 21%] Generating ../generated/map.sh.h +[ 22%] Generating ../generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' -[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h.tmp [ 22%] Generating ../generated/rbh.sh.h -cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh -[ 22%] Built target cacode +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -[ 22%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' +[ 22%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h.tmp [ 22%] Generating ../generated/clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh +[ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -[ 22%] Built target ksw2 -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h.tmp -[ 22%] Generating ../generated/cascaded_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h [ 22%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh [ 22%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h -[ 23%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h.tmp -[ 23%] Generating ../generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh -[ 24%] Generating ../generated/translated_search.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h.tmp +[ 23%] Generating ../generated/translated_search.sh.h +[ 24%] Generating ../generated/createindex.sh.h +[ 24%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h.tmp [ 24%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated [ 24%] Generating ../generated/multihitdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h +[ 25%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h.tmp +[ 25%] Generating ../generated/enrich.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h -[ 25%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h [ 25%] Generating ../generated/blastn.sh.h -[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh -[ 26%] Generating ../generated/enrich.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h.tmp +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h [ 27%] Generating ../generated/taxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh [ 27%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h +[ 27%] Generating ../generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h -[ 27%] Generating ../generated/databases.sh.h -[ 28%] Generating ../generated/iterativepp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh -[ 29%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh -[ 29%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h +[ 28%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +[ 29%] Generating ../generated/iterativepp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated +[ 29%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl iterativepp.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' [ 29%] Built target generated @@ -3569,32 +3612,32 @@ make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_ssse3' [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o cd 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-D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-14-7e284+ds/src/alignment/MsaFilter.cpp cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated 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src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering 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/build/mmseqs2-14-7e284+ds/src/clustering/Clustering.cpp cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-14-7e284+ds/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde 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src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/CSProfile.cpp @@ -3620,10 +3663,10 @@ cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/FileUtil.cpp -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/HeaderSummarizer.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/KSeqWrapper.cpp +[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/HeaderSummarizer.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/MemoryMapped.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o @@ -3658,10 +3701,10 @@ cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-14-7e284+ds/src/prefiltering/IndexBuilder.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode 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CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-14-7e284+ds/src/prefiltering/Main.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o @@ -3764,9 +3807,9 @@ cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons 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-fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/orftocontig.cpp @@ -3825,8 +3868,8 @@ [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 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/build/mmseqs2-14-7e284+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering 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object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true VTML40.out -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatmatrix.cpp -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide.out +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h.tmp [ 7%] Linking CXX static library libversion.a +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_sim.cpp -[ 7%] Generating ../generated/nucleotide.out.h -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide.out -cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 8%] Generating ../generated/blosum62.out.h -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out -[ 8%] Generating ../generated/PAM30.out.h -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out -cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h -/usr/bin/ranlib libversion.a -cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h.tmp -cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h.tmp +[ 8%] Generating ../generated/PAM30.out.h [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h -[ 8%] Built target version -cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out [ 8%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp +/usr/bin/ranlib libversion.a +cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-14-7e284+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h.tmp +[ 9%] Built target version +cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h [ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp [ 10%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp -[ 12%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 11%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -[ 13%] Linking C static library libmicrotar.a -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h -[ 14%] Generating ../generated/libPolished_8.lib.h -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h +[ 13%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib +[ 14%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h.tmp +[ 16%] Linking C static library libmicrotar.a +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h +[ 16%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' +[ 16%] Built target microtar +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; @@ -4100,7 +4167,6 @@ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 446 | ret->value = NAN; | ^~ @@ -4109,223 +4175,200 @@ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -/usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h.tmp -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h -[ 14%] Built target microtar -[ 15%] Generating ../generated/cs219.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -[ 16%] Generating ../generated/krona_prelude.html.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h -[ 16%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h.tmp -[ 16%] Generating ../generated/K4000.crf.h -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h -cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_sse3/generated/K4000.crf.h +cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h [ 16%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh +[ 16%] Generating ../generated/K4000.crf.h +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_sse3/generated/K4000.crf.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h [ 17%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h.tmp -[ 18%] Linking C static library libtinyexpr.a -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -[ 19%] Generating ../generated/easytaxonomy.sh.h +[ 18%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h.tmp -[ 19%] Built target tinyexpr +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' -[ 19%] Generating ../generated/easyrbh.sh.h +[ 18%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh -[ 19%] Built target cacode -[ 20%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h +[ 19%] Generating ../generated/blastp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -[ 20%] Generating ../generated/blastpgp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h +[ 19%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h -[ 21%] Generating ../generated/map.sh.h +[ 20%] Generating ../generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -[ 21%] Generating ../generated/rbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h +[ 21%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h.tmp [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 21%] Generating ../generated/rbh.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h.tmp -[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h.tmp +[ 21%] Built target tinyexpr cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h -[ 22%] Generating ../generated/linclust.sh.h +[ 21%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h -[ 22%] Generating ../generated/cascaded_clustering.sh.h -[ 22%] Generating ../generated/clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh +[ 21%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp +[ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h.tmp [ 22%] Generating ../generated/update_clustering.sh.h +[ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h -[ 22%] Built target ksw2 -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h.tmp [ 22%] Generating ../generated/searchtargetprofile.sh.h +[ 22%] Built target cacode cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh +make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h [ 23%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +[ 23%] Built target ksw2 cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp [ 23%] Generating ../generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h.tmp [ 24%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h [ 24%] Generating ../generated/taxpercontig.sh.h -[ 24%] Generating ../generated/multihitdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h +[ 24%] Generating ../generated/multihitdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h [ 25%] Generating ../generated/multihitsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h.tmp [ 25%] Generating ../generated/enrich.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h.tmp [ 25%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h -[ 27%] Generating ../generated/taxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h +[ 27%] Generating ../generated/taxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h [ 27%] Generating ../generated/linsearch.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -[ 27%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h.tmp [ 28%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh +[ 28%] Generating ../generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h [ 29%] Generating ../generated/iterativepp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh -[ 29%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p 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/build/mmseqs2-14-7e284+ds/build_sse3/generated/iterativepp.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/databases.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/tsv2exprofiledb.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/databases.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/iterativepp.sh.h.tmp -cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/iterativepp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/iterativepp.sh.h +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/databases.sh.h.tmp +cd /build/mmseqs2-14-7e284+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/iterativepp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp 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CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-14-7e284+ds/src/prefiltering/Prefiltering.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o @@ -4518,8 +4561,8 @@ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/offsetalignment.cpp cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/createseqfiledb.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/createsubdb.cpp @@ -4697,7 +4740,7 @@ make[1]: Entering directory '/build/mmseqs2-14-7e284+ds' dh_install -pmmseqs2 debian/bin/simd-dispatch /usr/lib/mmseqs2/ dh_auto_install --builddirectory build_avx2 && dh_auto_install --builddirectory build_avx && dh_auto_install --builddirectory build_sse4.1 && dh_auto_install --builddirectory build_ssse3 && dh_auto_install --builddirectory build_sse3 && true - cd build_avx2 && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx2 && make -j16 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4709,7 +4752,7 @@ -- Install configuration: "None" -- Installing: /build/mmseqs2-14-7e284+ds/debian/tmp/usr/bin/mmseqs-avx2 make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' - cd build_avx && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx && make -j16 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4721,7 +4764,7 @@ -- Install configuration: "None" -- Installing: /build/mmseqs2-14-7e284+ds/debian/tmp/usr/bin/mmseqs-avx make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' - cd build_sse4.1 && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse4.1 && make -j16 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4733,7 +4776,7 @@ -- Install configuration: "None" -- Installing: /build/mmseqs2-14-7e284+ds/debian/tmp/usr/bin/mmseqs-sse4.1 make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' - cd build_ssse3 && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_ssse3 && make -j16 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_ssse3' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4745,7 +4788,7 @@ -- Install configuration: "None" -- Installing: /build/mmseqs2-14-7e284+ds/debian/tmp/usr/bin/mmseqs-ssse3 make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' - cd build_sse3 && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse3 && make -j16 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_sse3' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4803,9 +4846,9 @@ make[1]: Leaving directory '/build/mmseqs2-14-7e284+ds' dh_md5sums dh_builddeb +dpkg-deb: building package 'mmseqs2' in '../mmseqs2_14-7e284+ds-1_amd64.deb'. dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_14-7e284+ds-1_amd64.deb'. dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_14-7e284+ds-1_all.deb'. -dpkg-deb: building package 'mmseqs2' in '../mmseqs2_14-7e284+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mmseqs2_14-7e284+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../mmseqs2_14-7e284+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4813,12 +4856,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2463580/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2463580/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1544095 and its subdirectories -I: Current time: Fri May 12 20:59:01 -12 2023 -I: pbuilder-time-stamp: 1683968341 +I: removing directory /srv/workspace/pbuilder/2463580 and its subdirectories +I: Current time: Sat Jun 15 05:47:46 +14 2024 +I: pbuilder-time-stamp: 1718380066