Diff of the two buildlogs: -- --- b1/build.log 2023-04-22 11:18:30.959392905 +0000 +++ b2/build.log 2023-04-22 11:29:43.957552544 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 24 05:30:19 -12 2024 -I: pbuilder-time-stamp: 1716571819 +I: Current time: Sun Apr 23 01:18:33 +14 2023 +I: pbuilder-time-stamp: 1682162313 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./artemis_18.2.0+dfsg.orig.tar.xz] I: copying [./artemis_18.2.0+dfsg-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Nov 3 22:58:49 2022 -12 +gpgv: Signature made Sat Nov 5 00:58:49 2022 +14 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./artemis_18.2.0+dfsg-3.dsc: no acceptable signature found @@ -34,52 +34,84 @@ dpkg-source: info: applying overriding_testReferenceBasesByRegion.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/21879/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32661/tmp/hooks/D01_modify_environment starting +debug: Running on codethink10-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 23 01:18 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32661/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32661/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='21879' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32661 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Fx9kZ7Qc/pbuilderrc_3Lm2 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Fx9kZ7Qc/b1 --logfile b1/build.log artemis_18.2.0+dfsg-3.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Fx9kZ7Qc/pbuilderrc_I5ML --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Fx9kZ7Qc/b2 --logfile b2/build.log --extrapackages usrmerge artemis_18.2.0+dfsg-3.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink11-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 24 04:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/21879/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 21 00:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/32661/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -580,7 +612,7 @@ Get: 409 http://deb.debian.org/debian bookworm/main arm64 maven all 3.8.7-1 [18.9 kB] Get: 410 http://deb.debian.org/debian bookworm/main arm64 maven-repo-helper all 1.11 [142 kB] Get: 411 http://deb.debian.org/debian bookworm/main arm64 maven-debian-helper all 2.6.2 [108 kB] -Fetched 524 MB in 41s (12.7 MB/s) +Fetched 524 MB in 32s (16.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libfftw3-double3:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -2450,8 +2482,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/artemis-18.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../artemis_18.2.0+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/32661/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/32661/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/artemis-18.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../artemis_18.2.0+dfsg-3_source.changes dpkg-buildpackage: info: source package artemis dpkg-buildpackage: info: source version 18.2.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -2542,8 +2583,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 58.738 s -[INFO] Finished at: 2024-05-24T05:33:38-12:00 +[INFO] Total time: 40.867 s +[INFO] Finished at: 2023-04-23T01:21:25+14:00 [INFO] ------------------------------------------------------------------------ # Now, 4 jars are meant to be created: they are similar to each other but # do not exactly have the same contents. We design this with the pom.xml file, @@ -2613,63 +2654,63 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.sanger.artemis.ComparisonDataFactoryTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.025 s - in uk.ac.sanger.artemis.ComparisonDataFactoryTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.639 s - in uk.ac.sanger.artemis.ComparisonDataFactoryTest [INFO] Running uk.ac.sanger.artemis.FeatureTest -[INFO] Tests run: 75, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 63.727 s - in uk.ac.sanger.artemis.FeatureTest +[INFO] Tests run: 75, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 67.881 s - in uk.ac.sanger.artemis.FeatureTest [INFO] Running uk.ac.sanger.artemis.FeatureSegmentTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.283 s - in uk.ac.sanger.artemis.FeatureSegmentTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.512 s - in uk.ac.sanger.artemis.FeatureSegmentTest [INFO] Running uk.ac.sanger.artemis.sequence.StrandTest -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.27 s - in uk.ac.sanger.artemis.sequence.StrandTest +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.524 s - in uk.ac.sanger.artemis.sequence.StrandTest [INFO] Running uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.868 s - in uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.656 s - in uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest [INFO] Running uk.ac.sanger.artemis.sequence.BasesTest -[INFO] Tests run: 28, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.875 s - in uk.ac.sanger.artemis.sequence.BasesTest +[INFO] Tests run: 28, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.558 s - in uk.ac.sanger.artemis.sequence.BasesTest [INFO] Running uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.176 s - in uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.308 s - in uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest [INFO] Running uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.179 s - in uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.435 s - in uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest [INFO] Running uk.ac.sanger.artemis.circular.digest.UtilsTest -[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.147 s - in uk.ac.sanger.artemis.circular.digest.UtilsTest +[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.295 s - in uk.ac.sanger.artemis.circular.digest.UtilsTest [INFO] Running uk.ac.sanger.artemis.editor.EvidenceViewerTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.16 s - in uk.ac.sanger.artemis.editor.EvidenceViewerTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.452 s - in uk.ac.sanger.artemis.editor.EvidenceViewerTest [INFO] Running uk.ac.sanger.artemis.plot.UserPlotTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.365 s - in uk.ac.sanger.artemis.plot.UserPlotTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.896 s - in uk.ac.sanger.artemis.plot.UserPlotTest [INFO] Running uk.ac.sanger.artemis.util.IconManagerTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.205 s - in uk.ac.sanger.artemis.util.IconManagerTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.356 s - in uk.ac.sanger.artemis.util.IconManagerTest [INFO] Running uk.ac.sanger.artemis.io.BlastStreamFeatureTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.281 s - in uk.ac.sanger.artemis.io.BlastStreamFeatureTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.727 s - in uk.ac.sanger.artemis.io.BlastStreamFeatureTest [INFO] Running uk.ac.sanger.artemis.io.SimpleDocumentEntryTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.567 s - in uk.ac.sanger.artemis.io.SimpleDocumentEntryTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.397 s - in uk.ac.sanger.artemis.io.SimpleDocumentEntryTest [INFO] Running uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest -[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.28 s - in uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest +[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.788 s - in uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest [INFO] Running uk.ac.sanger.artemis.io.GFFTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.282 s - in uk.ac.sanger.artemis.io.GFFTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.839 s - in uk.ac.sanger.artemis.io.GFFTest [INFO] Running uk.ac.sanger.artemis.io.ValidateFeatureTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.291 s - in uk.ac.sanger.artemis.io.ValidateFeatureTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.58 s - in uk.ac.sanger.artemis.io.ValidateFeatureTest [INFO] Running uk.ac.sanger.artemis.io.LineGroupCacheTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.287 s - in uk.ac.sanger.artemis.io.LineGroupCacheTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.048 s - in uk.ac.sanger.artemis.io.LineGroupCacheTest [INFO] Running uk.ac.sanger.artemis.io.LocationTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.204 s - in uk.ac.sanger.artemis.io.LocationTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.492 s - in uk.ac.sanger.artemis.io.LocationTest [INFO] Running uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.756 s - in uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.567 s - in uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest [INFO] Running uk.ac.sanger.artemis.io.GffToEMBLTest Written... /build/artemis-18.2.0+dfsg/target/test-classes/data/gff/Pf3D7_01_02_v3.gff.gz.embl.gz Written... /build/artemis-18.2.0+dfsg/target/test-classes/data/gff/test.gff.gz.embl.gz Written... /build/artemis-18.2.0+dfsg/target/test-classes/data/gff/test_boundary.gff.gz.embl.gz -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.468 s - in uk.ac.sanger.artemis.io.GffToEMBLTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.608 s - in uk.ac.sanger.artemis.io.GffToEMBLTest [INFO] Running uk.ac.sanger.artemis.io.GFF3EncoderTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.207 s - in uk.ac.sanger.artemis.io.GFF3EncoderTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.664 s - in uk.ac.sanger.artemis.io.GFF3EncoderTest [INFO] Running uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest -[INFO] Tests run: 29, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.715 s - in uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest +[INFO] Tests run: 29, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.256 s - in uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest [INFO] Running uk.ac.sanger.artemis.components.DbfetchEntrySourceTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.154 s - in uk.ac.sanger.artemis.components.DbfetchEntrySourceTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.139 s - in uk.ac.sanger.artemis.components.DbfetchEntrySourceTest [INFO] Running uk.ac.sanger.artemis.components.RunInterProSearchTest -05:39:05.672 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query: Oops something went wrong -05:39:05.705 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query due to an unknown host error: Oops something went wrong -05:39:05.734 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: HTTP error received from EBI InterPro website: 403 -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.469 s - in uk.ac.sanger.artemis.components.RunInterProSearchTest +01:27:21.715 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query: Oops something went wrong +01:27:21.759 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query due to an unknown host error: Oops something went wrong +01:27:21.787 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: HTTP error received from EBI InterPro website: 403 +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.314 s - in uk.ac.sanger.artemis.components.RunInterProSearchTest [INFO] Running uk.ac.sanger.artemis.components.EditMenuTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.258 s - in uk.ac.sanger.artemis.components.EditMenuTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.236 s - in uk.ac.sanger.artemis.components.EditMenuTest [INFO] Running uk.ac.sanger.artemis.components.alignment.BamUtilsTest testGetExistingIndexFileForFtpCram(): This test creates index files and may be slow to complete testGetExistingIndexFileForFtpCram() : WARNING: Unable to run this test as cannot connect to Sanger FTP server @@ -2677,17 +2718,17 @@ testGetIndexFileForFtpBam() : WARNING: Unable to run this test as cannot connect to Sanger FTP server testGetIndexFileForFtpBam() : WARNING: Unable to run this test as cannot connect to Sanger FTP server testCreateIndexFileForFtpCram() : WARNING: Unable to run this test as cannot connect to Sanger FTP server -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.279 s - in uk.ac.sanger.artemis.components.alignment.BamUtilsTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.807 s - in uk.ac.sanger.artemis.components.alignment.BamUtilsTest [INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.199 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.201 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest [INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.379 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.182 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsTest [INFO] Running uk.ac.sanger.artemis.components.ProjectPropertyTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.457 s - in uk.ac.sanger.artemis.components.ProjectPropertyTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.38 s - in uk.ac.sanger.artemis.components.ProjectPropertyTest [INFO] Running uk.ac.sanger.artemis.components.TransferAnnotationToolTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.377 s - in uk.ac.sanger.artemis.components.TransferAnnotationToolTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.322 s - in uk.ac.sanger.artemis.components.TransferAnnotationToolTest [INFO] Running uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest -[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.174 s - in uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest +[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.142 s - in uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest [INFO] [INFO] Results: [INFO] @@ -2696,8 +2737,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 06:33 min -[INFO] Finished at: 2024-05-24T05:40:20-12:00 +[INFO] Total time: 07:03 min +[INFO] Finished at: 2023-04-23T01:28:36+14:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/artemis-18.2.0+dfsg' create-stamp debian/debhelper-build-stamp @@ -2730,15 +2771,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 1.376 s -[INFO] Finished at: 2024-05-24T05:40:25-12:00 +[INFO] Total time: 1.323 s +[INFO] Finished at: 2023-04-23T01:28:41+14:00 [INFO] ------------------------------------------------------------------------  mh_resolve_dependencies --non-interactive --offline --build -partemis --base-directory=/build/artemis-18.2.0\+dfsg --non-explore Analysing pom.xml... > dpkg --search /usr/share/maven-repo/org/emboss/jemboss/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/org/emboss/jemboss -May 24, 2024 5:40:33 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Apr 23, 2023 1:28:49 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/artemis-18.2.0+dfsg/pom.xml: Dependency not found org.emboss:jemboss:jar:debian ERROR: pom.xml: dependency is not packaged in the Maven repository for Debian: org.emboss:jemboss:debian @@ -2782,12 +2823,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32661/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32661/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21879 and its subdirectories -I: Current time: Fri May 24 05:41:29 -12 2024 -I: pbuilder-time-stamp: 1716572489 +I: removing directory /srv/workspace/pbuilder/32661 and its subdirectories +I: Current time: Sun Apr 23 01:29:42 +14 2023 +I: pbuilder-time-stamp: 1682162982