Diff of the two buildlogs: -- --- b1/build.log 2023-05-31 09:22:55.536549352 +0000 +++ b2/build.log 2023-05-31 09:23:51.206104499 +0000 @@ -1,78 +1,8 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 2 03:45:06 -12 2024 -I: pbuilder-time-stamp: 1719935106 +I: Current time: Wed May 31 23:22:59 +14 2023 +I: pbuilder-time-stamp: 1685524979 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] -tar: ./dev/shm: time stamp 2025-08-04 08:53:42 is 34405715.468874 s in the future -tar: ./etc/resolv.conf: time stamp 2025-08-04 08:53:42 is 34405715.46815192 s in the future -tar: ./etc/mailname: time stamp 2025-08-04 08:53:42 is 34405715.46805516 s in the future -tar: ./etc/hostname: time stamp 2025-08-04 08:53:42 is 34405715.46797116 s in the future -tar: ./etc/hosts: time stamp 2025-08-04 08:53:42 is 34405715.46789902 s in the future -tar: ./tmp: time stamp 2025-08-04 08:53:52 is 34405725.45344846 s in the future -tar: ./usr/share/perl5/Debian: time stamp 2025-08-04 08:27:37 is 34404148.10942958 s in the future -tar: ./usr/share/man/pt/man8: time stamp 2025-08-04 08:27:37 is 34404148.0364335 s in the future -tar: ./usr/share/man/pt/man5: time stamp 2025-08-04 08:27:37 is 34404148.03083208 s in the future -tar: ./usr/share/man/nl/man8: time stamp 2025-08-04 08:27:37 is 34404148.0189381 s in the future -tar: ./usr/share/man/nl/man5: time stamp 2025-08-04 08:27:37 is 34404148.01458502 s in the future -tar: ./usr/share/man/man5: time stamp 2025-08-04 08:27:37 is 34404147.98036078 s in the future -tar: ./usr/share/man/fr/man5: time stamp 2025-08-04 08:27:37 is 34404147.91704594 s in the future -tar: ./usr/share/man/de/man5: time stamp 2025-08-04 08:27:37 is 34404147.90122066 s in the future -tar: ./usr/share/locale/zh_CN/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.68643442 s in the future -tar: ./usr/share/locale/vi/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.65725608 s in the future -tar: ./usr/share/locale/uk/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.60573954 s in the future -tar: ./usr/share/locale/sv/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.52753864 s in the future -tar: ./usr/share/locale/sk/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.50387992 s in the future -tar: ./usr/share/locale/ru/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.4555029 s in the future -tar: ./usr/share/locale/pt_BR/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.4080967 s in the future -tar: ./usr/share/locale/pt/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.3762999 s in the future -tar: ./usr/share/locale/pl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.35320072 s in the future -tar: ./usr/share/locale/nl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.3236268 s in the future -tar: ./usr/share/locale/nb/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.30182254 s in the future -tar: ./usr/share/locale/ko/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.2743776 s in the future -tar: ./usr/share/locale/ja/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.24200688 s in the future -tar: ./usr/share/locale/it/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.21893974 s in the future -tar: ./usr/share/locale/hu/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.20347158 s in the future -tar: ./usr/share/locale/gl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.19403918 s in the future -tar: ./usr/share/locale/fr/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.13979852 s in the future -tar: ./usr/share/locale/eu/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.10497284 s in the future -tar: ./usr/share/locale/es/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.06475794 s in the future -tar: ./usr/share/locale/de/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.0214144 s in the future -tar: ./usr/share/locale/da/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404146.99611026 s in the future -tar: ./usr/share/locale/cs/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404146.97063242 s in the future -tar: ./usr/share/locale/ca/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404146.94607766 s in the future -tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel.other: time stamp 2025-08-04 08:27:37 is 34404146.8685564 s in the future -tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel: time stamp 2025-08-04 08:27:37 is 34404146.86827716 s in the future -tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples: time stamp 2025-08-04 08:27:37 is 34404146.86813338 s in the future -tar: ./usr/share/doc/adduser/examples: time stamp 2025-08-04 08:27:37 is 34404146.86674968 s in the future -tar: ./usr/share/doc/adduser: time stamp 2025-08-04 08:27:37 is 34404146.86642258 s in the future -tar: ./var/log/dpkg.log: time stamp 2025-08-04 08:27:37 is 34404139.18030982 s in the future -tar: ./var/log/apt/history.log: time stamp 2025-08-04 08:27:37 is 34404139.1800937 s in the future -tar: ./var/log/apt/term.log: time stamp 2025-08-04 08:27:37 is 34404139.17991172 s in the future -tar: ./var/log/apt/eipp.log.xz: time stamp 2025-08-04 08:27:36 is 34404138.17977334 s in the future -tar: ./var/log/apt: time stamp 2025-08-04 08:27:36 is 34404138.17973308 s in the future -tar: ./var/cache/apt/archives/partial: time stamp 2025-08-04 08:27:36 is 34404138.15820058 s in the future -tar: ./var/cache/apt/archives: time stamp 2025-08-04 08:27:39 is 34404141.15810882 s in the future -tar: ./var/cache/apt: time stamp 2025-08-04 08:53:51 is 34405713.15808312 s in the future -tar: ./var/lib/dpkg/triggers/Lock: time stamp 2025-08-04 08:27:37 is 34404139.15540858 s in the future -tar: ./var/lib/dpkg/lock: time stamp 2025-08-04 08:27:37 is 34404139.15527656 s in the future -tar: ./var/lib/dpkg/updates: time stamp 2025-08-04 08:27:37 is 34404139.15301014 s in the future -tar: ./var/lib/dpkg/info/adduser.list: time stamp 2025-08-04 08:27:37 is 34404139.04815446 s in the future -tar: ./var/lib/dpkg/info: time stamp 2025-08-04 08:27:37 is 34404139.04779328 s in the future -tar: ./var/lib/dpkg/status-old: time stamp 2025-08-04 08:27:37 is 34404139.04420294 s in the future -tar: ./var/lib/dpkg/status: time stamp 2025-08-04 08:27:37 is 34404139.04197894 s in the future -tar: ./var/lib/dpkg: time stamp 2025-08-04 08:27:37 is 34404139.0418919 s in the future -tar: ./var/lib/apt/lists/partial: time stamp 2025-08-04 08:53:43 is 34405705.04153332 s in the future -tar: ./var/lib/apt/lists: time stamp 2025-08-04 08:27:33 is 34404134.3686719 s in the future -tar: ./var/lib/apt/extended_states: time stamp 2025-08-04 08:27:36 is 34404137.36851942 s in the future -tar: ./var/lib/apt: time stamp 2025-08-04 08:27:36 is 34404137.368398 s in the future -tar: ./run/shm: time stamp 2025-08-04 08:53:42 is 34405703.20907254 s in the future -tar: ./usr/share/man/de/man8: time stamp 2025-08-04 08:27:37 is 34404138.1918428 s in the future -tar: ./usr/share/man/fr/man8: time stamp 2025-08-04 08:27:37 is 34404138.19167104 s in the future -tar: ./usr/share/man/man8: time stamp 2025-08-04 08:27:37 is 34404138.19150052 s in the future -tar: ./usr/sbin: time stamp 2025-08-04 08:27:37 is 34404138.19083798 s in the future -tar: ./run: time stamp 2025-08-04 08:53:42 is 34405703.1907799 s in the future -tar: ./etc: time stamp 2025-08-04 08:53:42 is 34405703.1906389 s in the future -tar: ./dev: time stamp 2025-08-04 08:53:42 is 34405703.19061072 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -86,7 +16,7 @@ I: copying [./libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz] I: copying [./libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Mar 2 20:03:26 2020 -12 +gpgv: Signature made Tue Mar 3 22:03:26 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -96,52 +26,84 @@ dpkg-source: info: unpacking libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/32231/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/25330/tmp/hooks/D01_modify_environment starting +debug: Running on codethink12-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 31 23:23 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/25330/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/25330/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='32231' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=25330 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Kx0BDb8z/pbuilderrc_NXNL --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Kx0BDb8z/b1 --logfile b1/build.log libbio-alignio-stockholm-perl_1.7.3-2.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Kx0BDb8z/pbuilderrc_Q02m --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Kx0BDb8z/b2 --logfile b2/build.log --extrapackages usrmerge libbio-alignio-stockholm-perl_1.7.3-2.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink15-arm64 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 23 04:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/32231/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 28 00:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/25330/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -226,7 +188,7 @@ Get: 43 http://deb.debian.org/debian bookworm/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] -Fetched 21.7 MB in 1s (20.4 MB/s) +Fetched 21.7 MB in 0s (44.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19611 files and directories currently installed.) @@ -420,8 +382,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libbio-alignio-stockholm-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-alignio-stockholm-perl_1.7.3-2_source.changes +I: user script /srv/workspace/pbuilder/25330/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/25330/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/libbio-alignio-stockholm-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-alignio-stockholm-perl_1.7.3-2_source.changes dpkg-buildpackage: info: source package libbio-alignio-stockholm-perl dpkg-buildpackage: info: source version 1.7.3-2 dpkg-buildpackage: info: source distribution unstable @@ -445,8 +416,8 @@ dh_auto_build make -j8 make[1]: Entering directory '/build/libbio-alignio-stockholm-perl-1.7.3' -cp lib/Bio/Index/Stockholm.pm blib/lib/Bio/Index/Stockholm.pm cp lib/Bio/AlignIO/stockholm.pm blib/lib/Bio/AlignIO/stockholm.pm +cp lib/Bio/Index/Stockholm.pm blib/lib/Bio/Index/Stockholm.pm Manifying 2 pod documents make[1]: Leaving directory '/build/libbio-alignio-stockholm-perl-1.7.3' dh_auto_test @@ -560,7 +531,7 @@ ok 4 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok All tests successful. -Files=7, Tests=93, 3 wallclock secs ( 0.11 usr 0.02 sys + 2.42 cusr 0.24 csys = 2.79 CPU) +Files=7, Tests=93, 3 wallclock secs ( 0.11 usr 0.02 sys + 2.39 cusr 0.25 csys = 2.77 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-alignio-stockholm-perl-1.7.3' create-stamp debian/debhelper-build-stamp @@ -595,12 +566,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/25330/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/25330/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/32231 and its subdirectories -I: Current time: Tue Jul 2 03:45:54 -12 2024 -I: pbuilder-time-stamp: 1719935154 +I: removing directory /srv/workspace/pbuilder/25330 and its subdirectories +I: Current time: Wed May 31 23:23:50 +14 2023 +I: pbuilder-time-stamp: 1685525030