Diff of the two buildlogs: -- --- b1/build.log 2024-01-06 14:05:55.684826783 +0000 +++ b2/build.log 2024-01-06 14:22:24.011536784 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 7 08:12:34 -12 2025 -I: pbuilder-time-stamp: 1738959154 +I: Current time: Sun Jan 7 04:06:15 +14 2024 +I: pbuilder-time-stamp: 1704549975 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -25,49 +25,81 @@ dpkg-source: info: unpacking massxpert_7.0.0-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1850660/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3798124/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 6 14:06 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3798124/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3798124/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='45351c1873ec47988ba417ea0df23b2b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1850660' - PS1='# ' - PS2='> ' + INVOCATION_ID=a0ab568f4914472995c482ac55654582 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3798124 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.o5pN55qE/pbuilderrc_Nf56 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.o5pN55qE/b1 --logfile b1/build.log massxpert_7.0.0-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.104:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.o5pN55qE/pbuilderrc_ch0d --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.o5pN55qE/b2 --logfile b2/build.log massxpert_7.0.0-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.104:3128 I: uname -a - Linux codethink03-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash @@ -125,15 +157,15 @@ -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts + -rwxr-xr-x 1 root root 68392 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 6 14:06 sh -> /bin/bash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 23 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Apr 6 2023 tar - -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile + -rwxr-xr-x 1 root root 67904 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 23 2023 ulockmgr_server @@ -153,7 +185,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/1850660/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/3798124/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -657,7 +689,7 @@ Get: 442 http://deb.debian.org/debian bookworm/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 443 http://deb.debian.org/debian bookworm/main arm64 texlive-base all 2022.20230122-3 [21.9 MB] Get: 444 http://deb.debian.org/debian bookworm/main arm64 texlive-fonts-extra all 2022.20230122-4 [509 MB] -Fetched 936 MB in 12s (76.0 MB/s) +Fetched 936 MB in 11s (83.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libargon2-1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18171 files and directories currently installed.) @@ -2678,7 +2710,11 @@ fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/massxpert-7.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../massxpert_7.0.0-2_source.changes +I: user script /srv/workspace/pbuilder/3798124/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/3798124/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/massxpert-7.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../massxpert_7.0.0-2_source.changes dpkg-buildpackage: info: source package massxpert dpkg-buildpackage: info: source version 7.0.0-2 dpkg-buildpackage: info: source distribution unstable @@ -2686,11 +2722,11 @@ dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean -PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games +PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/massxpert-7.0.0' -PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games +PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ @@ -2708,13 +2744,13 @@ rm -rf debian/tmp make[1]: Leaving directory '/build/reproducible-path/massxpert-7.0.0' debian/rules build -PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games +PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/massxpert-7.0.0' -PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games +PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path mkdir -p debian/build mkdir -p debian/tmp cd debian/build && cmake -DBUILD_USER_MANUAL=1 -DCMAKE_INSTALL_PREFIX=/usr ../.. @@ -2732,7 +2768,7 @@ -- Detecting CXX compile features - done The devel directory where all the development projects -should reside: /nonexistent/first-build/devel. +should reside: /nonexistent/second-build/devel. Configuring build for project massXpert @@ -2838,7 +2874,7 @@ make[1]: Leaving directory '/build/reproducible-path/massxpert-7.0.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/massxpert-7.0.0' -PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games +PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path cd debian/build && make make[2]: Entering directory '/build/reproducible-path/massxpert-7.0.0/debian/build' /usr/bin/cmake -S/build/reproducible-path/massxpert-7.0.0 -B/build/reproducible-path/massxpert-7.0.0/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 @@ -5134,7 +5170,7 @@ dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary -PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games +PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path dh binary dh_testroot dh_prep @@ -5145,7 +5181,7 @@ install -m0755 -d debian/massxpert-data/usr/share/massxpert/data debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/massxpert-7.0.0' -PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games +PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path cd debian/build && DESTDIR=../tmp make install make[2]: Entering directory '/build/reproducible-path/massxpert-7.0.0/debian/build' /usr/bin/cmake -S/build/reproducible-path/massxpert-7.0.0 -B/build/reproducible-path/massxpert-7.0.0/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 @@ -5752,12 +5788,12 @@ install -m0755 -d debian/massxpert-doc/usr/share/doc-base/ install -p -m0644 debian/massxpert-doc.doc-base debian/massxpert-doc/usr/share/doc-base/massxpert-doc.massxpert-user-manual dh_installchangelogs - install -m0755 -d debian/massxpert-data/usr/share/doc/massxpert-data - install -p -m0644 debian/.debhelper/generated/massxpert-data/dh_installchangelogs.dch.trimmed debian/massxpert-data/usr/share/doc/massxpert-data/changelog.Debian - install -m0755 -d debian/massxpert-doc/usr/share/doc/massxpert-doc - install -p -m0644 debian/.debhelper/generated/massxpert-doc/dh_installchangelogs.dch.trimmed debian/massxpert-doc/usr/share/doc/massxpert-doc/changelog.Debian install -m0755 -d debian/massxpert/usr/share/doc/massxpert install -p -m0644 debian/.debhelper/generated/massxpert/dh_installchangelogs.dch.trimmed debian/massxpert/usr/share/doc/massxpert/changelog.Debian + install -m0755 -d debian/massxpert-doc/usr/share/doc/massxpert-doc + install -p -m0644 debian/.debhelper/generated/massxpert-doc/dh_installchangelogs.dch.trimmed debian/massxpert-doc/usr/share/doc/massxpert-doc/changelog.Debian + install -m0755 -d debian/massxpert-data/usr/share/doc/massxpert-data + install -p -m0644 debian/.debhelper/generated/massxpert-data/dh_installchangelogs.dch.trimmed debian/massxpert-data/usr/share/doc/massxpert-data/changelog.Debian dh_installman install -m0755 -d debian/massxpert/usr/share/man/man1/ install -p -m0644 debian/tmp/usr/share/man/man1/massxpert.1 debian/massxpert/usr/share/man/man1/massxpert.1 @@ -5809,18 +5845,18 @@ Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-prot-cleavage.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-prot-fragmentation.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-prot-polymer.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-protein-monomer-acidobasic-data.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-sacch-bond-formation.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-sacch-polymer.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertcalc-protein-1-letter-chempad.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertcalc-protein-1-letter-recorder.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertcalc-protein-1-letter.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertcalc-select-pol-chem-def.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-atoms.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-cleavages.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-cross-linkers.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-fragmentation-dna-base-loss-generic-method.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertedit-sequence-editor-sequence-import-errors-first.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertedit-sequence-editor-sequence-import-errors-purified.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertedit-spectrum-creation-from-cleavages.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-empty-input-mz-list.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-filled-input-mz-list.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-mz-only-filled-input-mz-list.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-mz-z-filled-input-mz-list.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-mz-z-filled-output-mz-list.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-mzlab-wnd.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/static/images/tick.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/static/images/logo.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/static/images/icons.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-feedback-addresses.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-massxpert-nucleic-acids-fragment-calculation.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-massxpert-protein-fragment-calculation.png using File::StripNondeterminism::handlers::png @@ -5833,6 +5869,18 @@ Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-prot-polymer.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-protein-monomer-acidobasic-data.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-sacch-bond-formation.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-protein-monomer-acidobasic-data.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-sacch-bond-formation.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-sacch-polymer.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertcalc-protein-1-letter-chempad.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertcalc-protein-1-letter-recorder.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertcalc-protein-1-letter.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertcalc-select-pol-chem-def.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-atoms.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-cleavages.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-cross-linkers.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-fragmentation-dna-base-loss-generic-method.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-sacch-polymer.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertcalc-protein-1-letter-chempad.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertcalc-protein-1-letter-recorder.png using File::StripNondeterminism::handlers::png @@ -5845,18 +5893,6 @@ Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertdef-fragmentation-dna-simplest-case.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertdef-modifications.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertedit-sequence-editor-sequence-import-errors-first.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertedit-sequence-editor-sequence-import-errors-purified.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertedit-spectrum-creation-from-cleavages.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-empty-input-mz-list.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-filled-input-mz-list.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-mz-only-filled-input-mz-list.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-mz-z-filled-input-mz-list.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-mz-z-filled-output-mz-list.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertminer-mzlab-wnd.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/static/images/tick.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/static/images/logo.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/static/images/icons.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertedit-fragmentation-cross-linked-oligomer.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertedit-fragmentation.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-xpertedit-mass-search.png using File::StripNondeterminism::handlers::png @@ -5893,18 +5929,6 @@ Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertminer-mz-z-filled-output-mz-list.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertminer-mzlab-wnd.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/web-dna-fragmentation.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-fragmentation-dna-simplest-case.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-modifications.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-monomers-mass-differences.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-monomers.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-pol-chem-def-wnd.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-select-pol-chem-def.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-3-letter-code-whole-process.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-choose-pol-chem-def.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-cleavages.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-compositions.png using File::StripNondeterminism::handlers::png - Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-cross-link-monomers.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-filtering-oligomer-data.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-find-sequence-dlg.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-fragmentation-cross-linked-oligomer.png using File::StripNondeterminism::handlers::png @@ -5917,10 +5941,22 @@ Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-net-charge-pka-ph-pi.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-protein-main-view.png using File::StripNondeterminism::handlers::png Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-result-spectrum-from-oligomers.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-fragmentation-dna-simplest-case.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-modifications.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-monomers-mass-differences.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-monomers.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-pol-chem-def-wnd.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertdef-select-pol-chem-def.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-3-letter-code-whole-process.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-choose-pol-chem-def.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-cleavages.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-compositions.png using File::StripNondeterminism::handlers::png + Normalizing debian/massxpert-doc/usr/share/doc/massxpert/html/images/print-xpertedit-cross-link-monomers.png using File::StripNondeterminism::handlers::png rm -f debian/massxpert-data.debhelper.log debian/massxpert-doc.debhelper.log debian/massxpert.debhelper.log debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/massxpert-7.0.0' -PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games +PATH: /build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/build/reproducible-path/massxpert-7.0.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path dh_compress -X.pdf cd debian/massxpert cd debian/massxpert-data @@ -5942,10 +5978,10 @@ find debian/massxpert ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/massxpert-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/massxpert/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/massxpert-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/massxpert/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/massxpert-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/massxpert/usr/share/man debian/massxpert/usr/share/applications -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/massxpert-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/massxpert-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/massxpert -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/massxpert/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/massxpert-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 @@ -5990,11 +6026,6 @@ install -m0755 -d debian/massxpert-data/DEBIAN install -m0755 -d debian/massxpert-doc/DEBIAN dh_gencontrol - install -m0755 -d debian/massxpert/DEBIAN - echo misc:Depends= >> debian/massxpert.substvars - echo misc:Pre-Depends= >> debian/massxpert.substvars - install -m0755 -d debian/.debhelper/massxpert/dbgsym-root/DEBIAN - dpkg-gencontrol -pmassxpert -ldebian/changelog -Tdebian/massxpert.substvars -Pdebian/.debhelper/massxpert/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=massxpert-dbgsym "-DDepends=massxpert (= \${binary:Version})" "-DDescription=debug symbols for massxpert" -DBuild-Ids=ab5dbafc490f5af5a5516ab62f959e0f5f92ce9c -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/massxpert-data/DEBIAN echo misc:Depends= >> debian/massxpert-data.substvars echo misc:Pre-Depends= >> debian/massxpert-data.substvars @@ -6003,19 +6034,24 @@ echo misc:Depends= >> debian/massxpert-doc.substvars echo misc:Pre-Depends= >> debian/massxpert-doc.substvars dpkg-gencontrol -pmassxpert-doc -ldebian/changelog -Tdebian/massxpert-doc.substvars -Pdebian/massxpert-doc + install -m0755 -d debian/massxpert/DEBIAN + echo misc:Depends= >> debian/massxpert.substvars + echo misc:Pre-Depends= >> debian/massxpert.substvars + install -m0755 -d debian/.debhelper/massxpert/dbgsym-root/DEBIAN + dpkg-gencontrol -pmassxpert -ldebian/changelog -Tdebian/massxpert.substvars -Pdebian/.debhelper/massxpert/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=massxpert-dbgsym "-DDepends=massxpert (= \${binary:Version})" "-DDescription=debug symbols for massxpert" -DBuild-Ids=ab5dbafc490f5af5a5516ab62f959e0f5f92ce9c -DSection=debug -UMulti-Arch -UReplaces -UBreaks + chmod 0644 -- debian/massxpert-doc/DEBIAN/control + chown 0:0 -- debian/massxpert-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/massxpert/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/massxpert/dbgsym-root/DEBIAN/control dpkg-gencontrol -pmassxpert -ldebian/changelog -Tdebian/massxpert.substvars -Pdebian/massxpert - chmod 0644 -- debian/massxpert-doc/DEBIAN/control - chown 0:0 -- debian/massxpert-doc/DEBIAN/control chmod 0644 -- debian/massxpert-data/DEBIAN/control chown 0:0 -- debian/massxpert-data/DEBIAN/control chmod 0644 -- debian/massxpert/DEBIAN/control chown 0:0 -- debian/massxpert/DEBIAN/control dh_md5sums + install -m0755 -d debian/massxpert-doc/DEBIAN install -m0755 -d debian/massxpert/DEBIAN install -m0755 -d debian/massxpert-data/DEBIAN - install -m0755 -d debian/massxpert-doc/DEBIAN cd debian/massxpert-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/massxpert >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/massxpert-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums @@ -6030,13 +6066,13 @@ chmod 0644 -- debian/.debhelper/massxpert/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/massxpert/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --build debian/massxpert .. - dpkg-deb --root-owner-group --build debian/.debhelper/massxpert/dbgsym-root .. dpkg-deb --build debian/massxpert-data .. + dpkg-deb --root-owner-group --build debian/.debhelper/massxpert/dbgsym-root .. + dpkg-deb --build debian/massxpert .. dpkg-deb --build debian/massxpert-doc .. -dpkg-deb: building package 'massxpert' in '../massxpert_7.0.0-2_arm64.deb'. dpkg-deb: building package 'massxpert-dbgsym' in '../massxpert-dbgsym_7.0.0-2_arm64.deb'. dpkg-deb: building package 'massxpert-data' in '../massxpert-data_7.0.0-2_all.deb'. +dpkg-deb: building package 'massxpert' in '../massxpert_7.0.0-2_arm64.deb'. dpkg-deb: building package 'massxpert-doc' in '../massxpert-doc_7.0.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../massxpert_7.0.0-2_arm64.buildinfo dpkg-genchanges --build=binary -O../massxpert_7.0.0-2_arm64.changes @@ -6045,12 +6081,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3798124/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3798124/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1850660 and its subdirectories -I: Current time: Fri Feb 7 08:28:54 -12 2025 -I: pbuilder-time-stamp: 1738960134 +I: removing directory /srv/workspace/pbuilder/3798124 and its subdirectories +I: Current time: Sun Jan 7 04:22:22 +14 2024 +I: pbuilder-time-stamp: 1704550942