Diff of the two buildlogs: -- --- b1/build.log 2023-05-03 12:51:11.799377491 +0000 +++ b2/build.log 2023-05-03 13:07:12.689167006 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jun 4 06:55:43 -12 2024 -I: pbuilder-time-stamp: 1717527343 +I: Current time: Thu May 4 02:51:21 +14 2023 +I: pbuilder-time-stamp: 1683118281 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./python-cobra_0.26.2.orig.tar.gz] I: copying [./python-cobra_0.26.2-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Feb 5 09:32:48 2023 -12 +gpgv: Signature made Mon Feb 6 11:32:48 2023 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -32,52 +32,84 @@ dpkg-source: info: applying numpy_1.24.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/14085/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6637/tmp/hooks/D01_modify_environment starting +debug: Running on codethink12-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 4 02:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6637/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6637/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='14085' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6637 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5SP7VSP8/pbuilderrc_Jw6b --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5SP7VSP8/b1 --logfile b1/build.log python-cobra_0.26.2-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5SP7VSP8/pbuilderrc_FsJp --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5SP7VSP8/b2 --logfile b2/build.log --extrapackages usrmerge python-cobra_0.26.2-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink11-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 2 04:48 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/14085/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 4 00:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/6637/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -388,7 +420,7 @@ Get: 213 http://deb.debian.org/debian bookworm/main arm64 python3-sbml5 arm64 5.19.7+dfsg-2 [3128 kB] Get: 214 http://deb.debian.org/debian bookworm/main arm64 python3-simplejson arm64 3.18.3-1 [58.4 kB] Get: 215 http://deb.debian.org/debian bookworm/main arm64 python3-tabulate all 0.8.9-1 [35.2 kB] -Fetched 131 MB in 7s (17.6 MB/s) +Fetched 131 MB in 3s (51.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) @@ -1280,8 +1312,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/python-cobra-0.26.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.26.2-1_source.changes +I: user script /srv/workspace/pbuilder/6637/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/6637/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/python-cobra-0.26.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cobra_0.26.2-1_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.26.2-1 dpkg-buildpackage: info: source distribution unstable @@ -1291,7 +1332,7 @@ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/python-cobra-0.26.2' +make[1]: Map '/build/python-cobra-0.26.2' wordt binnengegaan dh_auto_clean I: pybuild base:240: python3.11 setup.py clean running clean @@ -1300,7 +1341,7 @@ 'build/scripts-3.11' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache -make[1]: Leaving directory '/build/python-cobra-0.26.2' +make[1]: Map '/build/python-cobra-0.26.2' wordt verlaten dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary @@ -1563,7 +1604,7 @@ /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) -.pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_minimal_medium.py: 46 warnings +.pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_minimal_medium.py: 55 warnings /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py:112: FutureWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. medium = pd.Series() @@ -1577,46 +1618,46 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - Computing stats ... Computing stats ... group 1/1 Computing stats ... group 1/1: min Computing stats ... group 1/1: min (1/31) Computing stats ... group 1/1: min (2/31) Computing stats ... group 1/1: min (3/31) Computing stats ... group 1/1: min (4/31) Computing stats ... group 1/1: min (5/31) Computing stats ... group 1/1: min (6/31) Computing stats ... group 1/1: min (7/31) Computing stats ... group 1/1: min (8/31) Computing stats ... group 1/1: min (9/31) Computing stats ... group 1/1: min (10/31) Computing stats ... group 1/1: min (11/31) Computing stats ... group 1/1: min (12/31) Computing stats ... group 1/1: min (13/31) Computing stats ... group 1/1: min (14/31) Computing stats ... group 1/1: min (15/31) Computing stats ... group 1/1: min (16/31) Computing stats ... group 1/1: min (17/31) Computing stats ... group 1/1: min (18/31) Computing stats ... group 1/1: min (19/31) Computing stats ... group 1/1: min (20/31) Computing stats ... group 1/1: min (21/31) Computing stats ... group 1/1: min 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ops: iterations (7/31) Computing stats ... group 1/1: ops: iterations (8/31) Computing stats ... group 1/1: ops: iterations (9/31) Computing stats ... group 1/1: ops: iterations (10/31) Computing stats ... group 1/1: ops: iterations (11/31) Computing stats ... group 1/1: ops: iterations (12/31) Computing stats ... group 1/1: ops: iterations (13/31) Computing stats ... group 1/1: ops: iterations (14/31) Computing stats ... group 1/1: ops: iterations (15/31) Computing stats ... group 1/1: ops: iterations (16/31) Computing stats ... group 1/1: ops: iterations (17/31) Computing stats ... group 1/1: ops: iterations (18/31) Computing stats ... group 1/1: ops: iterations (19/31) Computing stats ... group 1/1: ops: iterations (20/31) Computing stats ... group 1/1: ops: iterations (21/31) Computing stats ... group 1/1: ops: iterations (22/31) Computing stats ... group 1/1: ops: iterations (23/31) Computing stats ... group 1/1: ops: iterations (24/31) Computing stats ... group 1/1: ops: iterations (25/31) Computing stats ... group 1/1: ops: iterations (26/31) Computing stats ... group 1/1: ops: iterations (27/31) Computing stats ... group 1/1: ops: iterations (28/31) Computing stats ... group 1/1: ops: iterations (29/31) Computing stats ... group 1/1: ops: iterations (30/31) Computing stats ... group 1/1: ops: iterations (31/31) --------------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests --------------------------------------------------------------------------------------------------------------------------- -Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -test_subtract_metabolite_benchmark[gurobi] 16.8800 (1.0) 62.1000 (1.0) 22.1064 (1.0) 3.8361 (1.0) 21.7600 (1.0) 3.5150 (1.0) 146;25 45,235.7774 (1.0) 1135 1 -test_subtract_metabolite_benchmark[cplex] 17.3399 (1.03) 476.7199 (7.68) 23.2591 (1.05) 14.8459 (3.87) 22.5200 (1.03) 4.1800 (1.19) 6;12 42,993.9747 (0.95) 995 1 -test_subtract_metabolite_benchmark[glpk] 17.3600 (1.03) 681.0800 (10.97) 24.6463 (1.11) 23.6224 (6.16) 23.4999 (1.08) 4.4300 (1.26) 11;13 40,574.1066 (0.90) 1032 1 -test_change_objective_benchmark[optlang-glpk] 1,383.0600 (81.93) 4,614.0599 (74.30) 1,605.6680 (72.63) 137.2601 (35.78) 1,598.8100 (73.47) 103.2000 (29.36) 55;10 622.7937 (0.01) 718 1 -test_achr_sample_benchmark 1,486.2800 (88.05) 1,878.9800 (30.26) 1,656.4621 (74.93) 72.4779 (18.89) 1,655.2401 (76.07) 101.3949 (28.85) 104;1 603.6963 (0.01) 299 1 -test_optgp_sample_benchmark 2,063.2000 (122.23) 2,657.7399 (42.80) 2,329.2954 (105.37) 96.7823 (25.23) 2,325.0200 (106.85) 126.3200 (35.94) 101;4 429.3144 (0.01) 312 1 -test_loopless_benchmark_after 9,881.2400 (585.38) 10,488.7800 (168.90) 10,113.5842 (457.50) 131.0346 (34.16) 10,121.6200 (465.15) 162.3600 (46.19) 13;1 98.8769 (0.00) 52 1 -test_minimal_medium_mip_benchmark 40,802.1000 (>1000.0) 43,210.1401 (695.82) 41,882.0750 (>1000.0) 761.7935 (198.58) 41,695.5200 (>1000.0) 1,290.4700 (367.13) 7;0 23.8766 (0.00) 16 1 -test_minimal_medium_linear_benchmark 41,083.2000 (>1000.0) 43,795.1400 (705.24) 42,101.5653 (>1000.0) 773.8327 (201.72) 41,895.6600 (>1000.0) 1,086.9950 (309.24) 4;0 23.7521 (0.00) 15 1 -test_loopless_benchmark_before 41,536.3000 (>1000.0) 42,693.9600 (687.50) 42,078.3633 (>1000.0) 328.4137 (85.61) 42,026.2699 (>1000.0) 416.2400 (118.42) 5;0 23.7652 (0.00) 18 1 -test_single_reaction_deletion_benchmark[glpk] 79,439.8601 (>1000.0) 89,582.8600 (>1000.0) 83,657.5450 (>1000.0) 3,495.9678 (911.33) 82,968.1500 (>1000.0) 6,434.2101 (>1000.0) 6;0 11.9535 (0.00) 12 1 -test_copy_benchmark[optlang-glpk] 128,539.2799 (>1000.0) 140,849.8600 (>1000.0) 133,176.2200 (>1000.0) 4,464.4615 (>1000.0) 131,779.8601 (>1000.0) 7,382.7101 (>1000.0) 2;0 7.5088 (0.00) 8 1 -test_gpr_equality_benchmark 177,511.3801 (>1000.0) 181,446.2601 (>1000.0) 179,819.6240 (>1000.0) 1,547.1150 (403.30) 180,263.4399 (>1000.0) 2,227.4900 (633.71) 2;0 5.5611 (0.00) 5 1 -test_deepcopy_benchmark 186,135.0000 (>1000.0) 200,156.9200 (>1000.0) 192,399.0433 (>1000.0) 6,180.8368 (>1000.0) 191,586.2300 (>1000.0) 11,577.9201 (>1000.0) 2;0 5.1975 (0.00) 6 1 -test_add_metabolite_benchmark[cplex] 399,773.1201 (>1000.0) 419,585.1800 (>1000.0) 412,016.6520 (>1000.0) 7,432.1262 (>1000.0) 413,441.8400 (>1000.0) 7,646.2349 (>1000.0) 2;0 2.4271 (0.00) 5 1 -test_fastcc_benchmark[glpk] 406,737.7400 (>1000.0) 434,007.1400 (>1000.0) 421,308.0120 (>1000.0) 11,816.9737 (>1000.0) 419,060.4800 (>1000.0) 20,706.3150 (>1000.0) 2;0 2.3736 (0.00) 5 1 -test_add_metabolite_benchmark[glpk] 408,236.5399 (>1000.0) 413,635.7000 (>1000.0) 412,153.5160 (>1000.0) 2,265.5220 (590.58) 413,219.8400 (>1000.0) 2,365.6949 (673.03) 1;0 2.4263 (0.00) 5 1 -test_add_metabolite_benchmark[gurobi] 409,620.3800 (>1000.0) 414,218.2401 (>1000.0) 411,669.5480 (>1000.0) 1,660.6034 (432.89) 411,610.0800 (>1000.0) 1,663.7850 (473.34) 2;0 2.4291 (0.00) 5 1 -test_optgp_init_benchmark 417,854.0800 (>1000.0) 435,567.1200 (>1000.0) 424,639.9520 (>1000.0) 8,444.4218 (>1000.0) 419,842.6000 (>1000.0) 14,850.4100 (>1000.0) 1;0 2.3549 (0.00) 5 1 -test_achr_init_benchmark 429,862.7999 (>1000.0) 448,859.2400 (>1000.0) 437,079.9200 (>1000.0) 7,843.6509 (>1000.0) 437,278.1400 (>1000.0) 11,775.3051 (>1000.0) 1;0 2.2879 (0.00) 5 1 -test_double_gene_deletion_benchmark 625,688.1800 (>1000.0) 700,364.1800 (>1000.0) 647,969.2480 (>1000.0) 30,454.4786 (>1000.0) 635,925.8000 (>1000.0) 32,081.7000 (>1000.0) 1;0 1.5433 (0.00) 5 1 -test_single_gene_deletion_fba_benchmark[glpk] 793,366.0400 (>1000.0) 1,172,279.6400 (>1000.0) 1,011,239.3800 (>1000.0) 152,955.4422 (>1000.0) 1,013,812.6799 (>1000.0) 239,771.6050 (>1000.0) 2;0 0.9889 (0.00) 5 1 -test_single_gene_deletion_linear_moma_benchmark[glpk] 1,151,513.0000 (>1000.0) 1,259,694.3000 (>1000.0) 1,203,757.6360 (>1000.0) 42,433.4393 (>1000.0) 1,212,317.4000 (>1000.0) 63,721.0450 (>1000.0) 2;0 0.8307 (0.00) 5 1 -test_pfba_benchmark[glpk] 1,223,351.6400 (>1000.0) 2,206,635.8400 (>1000.0) 1,464,038.3880 (>1000.0) 422,496.5641 (>1000.0) 1,247,053.7000 (>1000.0) 383,945.4300 (>1000.0) 1;1 0.6830 (0.00) 5 1 -test_gpr_symbolism_benchmark 1,322,774.1000 (>1000.0) 1,368,492.3600 (>1000.0) 1,347,641.1800 (>1000.0) 19,476.8495 (>1000.0) 1,345,790.7201 (>1000.0) 33,769.3951 (>1000.0) 2;0 0.7420 (0.00) 5 1 -test_single_gene_deletion_linear_room_benchmark[glpk] 1,629,405.4601 (>1000.0) 3,160,801.9799 (>1000.0) 1,987,088.5800 (>1000.0) 658,810.1073 (>1000.0) 1,712,130.0600 (>1000.0) 481,217.3299 (>1000.0) 1;1 0.5032 (0.00) 5 1 -test_geometric_fba_benchmark[glpk] 2,024,429.8000 (>1000.0) 2,074,710.3200 (>1000.0) 2,052,804.5640 (>1000.0) 18,635.5900 (>1000.0) 2,056,186.2600 (>1000.0) 22,517.1700 (>1000.0) 2;0 0.4871 (0.00) 5 1 -test_copy_benchmark_large_model[optlang-glpk] 2,806,761.1400 (>1000.0) 4,315,207.3401 (>1000.0) 3,634,145.7080 (>1000.0) 700,460.9589 (>1000.0) 4,004,470.2600 (>1000.0) 1,233,520.5300 (>1000.0) 1;0 0.2752 (0.00) 5 1 -test_flux_variability_loopless_benchmark[glpk] 5,081,760.4800 (>1000.0) 5,415,308.8200 (>1000.0) 5,276,513.5520 (>1000.0) 135,113.8455 (>1000.0) 5,296,016.7601 (>1000.0) 212,357.7600 (>1000.0) 2;0 0.1895 (0.00) 5 1 -test_double_reaction_deletion_benchmark 11,638,774.2200 (>1000.0) 12,255,860.6800 (>1000.0) 11,839,043.7720 (>1000.0) 239,625.1589 (>1000.0) 11,770,954.9600 (>1000.0) 168,524.8851 (>1000.0) 1;1 0.0845 (0.00) 5 1 -test_flux_variability_benchmark[glpk] 15,037,640.8200 (>1000.0) 17,121,727.9200 (>1000.0) 16,259,334.3760 (>1000.0) 873,121.4886 (>1000.0) 16,212,446.3200 (>1000.0) 1,426,265.1901 (>1000.0) 1;0 0.0615 (0.00) 5 1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + Computing stats ... Computing stats ... group 1/1 Computing stats ... group 1/1: min Computing stats ... group 1/1: min (1/31) Computing stats ... group 1/1: min (2/31) Computing stats ... group 1/1: min (3/31) Computing stats ... group 1/1: min (4/31) Computing stats ... group 1/1: min (5/31) Computing stats ... group 1/1: min (6/31) Computing stats ... group 1/1: min (7/31) Computing stats ... group 1/1: min (8/31) Computing stats ... group 1/1: min (9/31) Computing stats ... group 1/1: min (10/31) Computing stats ... group 1/1: min (11/31) Computing stats ... group 1/1: min (12/31) Computing stats ... group 1/1: min (13/31) Computing stats ... group 1/1: min (14/31) Computing stats ... group 1/1: min (15/31) Computing stats ... group 1/1: min (16/31) Computing stats ... group 1/1: min (17/31) Computing stats ... group 1/1: min (18/31) Computing stats ... group 1/1: min (19/31) Computing stats ... group 1/1: min (20/31) Computing stats ... group 1/1: min (21/31) Computing stats ... group 1/1: min (22/31) Computing stats ... group 1/1: min (23/31) Computing stats ... group 1/1: min (24/31) Computing stats ... group 1/1: min (25/31) Computing stats ... group 1/1: min (26/31) Computing stats ... group 1/1: min (27/31) Computing stats ... group 1/1: min (28/31) Computing stats ... group 1/1: min (29/31) Computing stats ... group 1/1: min (30/31) Computing stats ... group 1/1: min (31/31) Computing stats ... group 1/1: min (1/31) Computing stats ... group 1/1: min (2/31) Computing stats ... group 1/1: min (3/31) Computing stats ... group 1/1: min (4/31) Computing stats ... group 1/1: min (5/31) Computing stats ... group 1/1: min (6/31) Computing stats ... group 1/1: min (7/31) Computing stats ... group 1/1: min (8/31) Computing stats ... group 1/1: min (9/31) Computing stats ... group 1/1: min (10/31) Computing stats ... group 1/1: min (11/31) Computing stats ... group 1/1: min (12/31) Computing stats ... group 1/1: min (13/31) Computing stats ... group 1/1: min (14/31) Computing stats ... group 1/1: min (15/31) Computing stats ... group 1/1: min (16/31) Computing stats ... group 1/1: min (17/31) Computing stats ... group 1/1: min (18/31) Computing stats ... group 1/1: min (19/31) Computing stats ... group 1/1: min (20/31) Computing stats ... group 1/1: min (21/31) Computing stats ... group 1/1: min (22/31) Computing stats ... group 1/1: min (23/31) Computing stats ... group 1/1: min (24/31) Computing stats ... group 1/1: min (25/31) Computing stats ... group 1/1: min (26/31) Computing stats ... group 1/1: min (27/31) Computing stats ... group 1/1: min (28/31) Computing stats ... group 1/1: min (29/31) Computing stats ... group 1/1: min (30/31) Computing stats ... group 1/1: min (31/31) Computing stats ... group 1/1: max Computing stats ... group 1/1: max (1/31) Computing stats ... group 1/1: max (2/31) Computing stats ... group 1/1: max (3/31) Computing stats ... group 1/1: max (4/31) Computing stats ... group 1/1: max (5/31) Computing stats ... group 1/1: max (6/31) Computing stats ... group 1/1: max (7/31) Computing stats ... group 1/1: max (8/31) Computing stats ... group 1/1: max (9/31) Computing stats ... group 1/1: max (10/31) Computing stats ... group 1/1: max (11/31) Computing stats ... group 1/1: max (12/31) Computing stats ... group 1/1: max (13/31) Computing stats ... group 1/1: max (14/31) Computing stats ... group 1/1: max (15/31) Computing stats ... group 1/1: max (16/31) Computing stats ... group 1/1: max (17/31) Computing stats ... group 1/1: max (18/31) Computing stats ... group 1/1: max (19/31) Computing stats ... group 1/1: max (20/31) Computing stats ... group 1/1: max (21/31) Computing stats ... group 1/1: max (22/31) Computing stats ... group 1/1: max (23/31) Computing stats ... group 1/1: max (24/31) Computing stats ... group 1/1: max (25/31) Computing stats ... group 1/1: max (26/31) Computing stats ... group 1/1: max (27/31) Computing stats ... group 1/1: max (28/31) Computing stats ... group 1/1: max (29/31) Computing stats ... group 1/1: max (30/31) Computing stats ... group 1/1: max (31/31) Computing stats ... group 1/1: max (1/31) Computing stats ... group 1/1: max (2/31) Computing stats ... group 1/1: max (3/31) Computing stats ... group 1/1: max (4/31) Computing stats ... group 1/1: max (5/31) Computing stats ... group 1/1: max (6/31) Computing stats ... group 1/1: max (7/31) Computing stats ... group 1/1: max (8/31) Computing stats ... group 1/1: max (9/31) Computing stats ... group 1/1: max (10/31) Computing stats ... group 1/1: max (11/31) Computing stats ... group 1/1: max (12/31) Computing stats ... group 1/1: max (13/31) Computing stats ... group 1/1: max (14/31) Computing stats ... group 1/1: max (15/31) Computing stats ... group 1/1: max (16/31) Computing stats ... group 1/1: max (17/31) Computing stats ... group 1/1: max (18/31) Computing stats ... group 1/1: max (19/31) Computing stats ... group 1/1: max (20/31) Computing stats ... group 1/1: max (21/31) Computing stats ... group 1/1: max (22/31) Computing stats ... group 1/1: max (23/31) Computing stats ... group 1/1: max (24/31) Computing stats ... group 1/1: max (25/31) Computing stats ... group 1/1: max (26/31) Computing stats ... group 1/1: max (27/31) Computing stats ... group 1/1: max (28/31) Computing stats ... group 1/1: max (29/31) Computing stats ... group 1/1: max (30/31) Computing stats ... group 1/1: max (31/31) Computing stats ... group 1/1: mean Computing stats ... group 1/1: mean (1/31) Computing stats ... group 1/1: mean (2/31) Computing stats ... group 1/1: mean (3/31) Computing stats ... group 1/1: mean (4/31) Computing stats ... group 1/1: mean (5/31) Computing stats ... group 1/1: mean (6/31) Computing stats ... group 1/1: mean (7/31) Computing stats ... group 1/1: mean (8/31) Computing stats ... group 1/1: mean (9/31) Computing stats ... group 1/1: mean (10/31) Computing stats ... group 1/1: mean (11/31) Computing stats ... group 1/1: mean (12/31) Computing stats ... group 1/1: mean (13/31) Computing stats ... group 1/1: mean (14/31) Computing stats ... group 1/1: mean (15/31) Computing stats ... group 1/1: mean (16/31) Computing stats ... group 1/1: mean (17/31) Computing stats ... group 1/1: mean (18/31) Computing stats ... group 1/1: mean (19/31) Computing stats ... group 1/1: mean (20/31) Computing stats ... group 1/1: mean (21/31) Computing stats ... group 1/1: mean (22/31) Computing stats ... group 1/1: mean (23/31) Computing stats ... group 1/1: mean (24/31) Computing stats ... group 1/1: mean (25/31) Computing stats ... group 1/1: mean (26/31) Computing stats ... group 1/1: mean (27/31) Computing stats ... group 1/1: mean (28/31) Computing stats ... group 1/1: mean (29/31) Computing stats ... group 1/1: mean (30/31) Computing stats ... group 1/1: mean (31/31) Computing stats ... group 1/1: mean (1/31) Computing stats ... group 1/1: mean (2/31) Computing stats ... group 1/1: mean (3/31) Computing stats ... group 1/1: mean (4/31) Computing stats ... group 1/1: mean (5/31) Computing stats ... group 1/1: mean (6/31) Computing stats ... group 1/1: mean (7/31) Computing stats ... group 1/1: mean (8/31) Computing stats ... group 1/1: mean (9/31) Computing stats ... group 1/1: mean (10/31) Computing stats ... group 1/1: mean (11/31) Computing stats ... group 1/1: mean (12/31) Computing stats ... group 1/1: mean (13/31) Computing stats ... group 1/1: mean (14/31) Computing stats ... group 1/1: mean (15/31) Computing stats ... group 1/1: mean (16/31) Computing stats ... group 1/1: mean (17/31) Computing stats ... group 1/1: mean (18/31) Computing stats ... group 1/1: mean (19/31) Computing stats ... group 1/1: mean (20/31) Computing stats ... group 1/1: mean (21/31) Computing stats ... group 1/1: mean (22/31) Computing stats ... group 1/1: mean (23/31) Computing stats ... group 1/1: mean (24/31) Computing stats ... group 1/1: mean (25/31) Computing stats ... group 1/1: mean (26/31) Computing stats ... group 1/1: mean (27/31) Computing stats ... group 1/1: mean (28/31) Computing stats ... group 1/1: mean (29/31) Computing stats ... group 1/1: mean (30/31) Computing stats ... group 1/1: mean (31/31) Computing stats ... group 1/1: median Computing stats ... group 1/1: median (1/31) Computing stats ... group 1/1: median (2/31) Computing stats ... group 1/1: median (3/31) Computing stats ... group 1/1: median (4/31) Computing stats ... group 1/1: median (5/31) Computing stats ... group 1/1: median (6/31) Computing stats ... group 1/1: median (7/31) Computing stats ... group 1/1: median (8/31) Computing stats ... group 1/1: median (9/31) Computing stats ... group 1/1: median (10/31) Computing stats ... group 1/1: median (11/31) Computing stats ... group 1/1: median (12/31) Computing stats ... group 1/1: median (13/31) Computing stats ... group 1/1: median (14/31) Computing stats ... group 1/1: median (15/31) Computing stats ... group 1/1: median (16/31) Computing stats ... group 1/1: median (17/31) Computing stats ... group 1/1: median (18/31) Computing stats ... group 1/1: median (19/31) Computing stats ... group 1/1: median (20/31) Computing stats ... group 1/1: median (21/31) Computing stats ... group 1/1: median (22/31) Computing stats ... group 1/1: median (23/31) Computing stats ... group 1/1: median (24/31) Computing stats ... group 1/1: median (25/31) Computing stats ... group 1/1: median (26/31) Computing stats ... group 1/1: median (27/31) Computing stats ... group 1/1: median (28/31) Computing stats ... group 1/1: median (29/31) Computing stats ... group 1/1: median (30/31) Computing stats ... group 1/1: median (31/31) Computing stats ... group 1/1: median (1/31) Computing stats ... group 1/1: median (2/31) Computing stats ... group 1/1: median (3/31) Computing stats ... group 1/1: median (4/31) Computing stats ... group 1/1: median (5/31) Computing stats ... group 1/1: median (6/31) Computing stats ... group 1/1: median (7/31) Computing stats ... group 1/1: median (8/31) Computing stats ... group 1/1: median (9/31) Computing stats ... group 1/1: median (10/31) Computing stats ... group 1/1: median (11/31) Computing stats ... group 1/1: median (12/31) Computing stats ... group 1/1: median (13/31) Computing stats ... group 1/1: median (14/31) Computing stats ... group 1/1: median (15/31) Computing stats ... group 1/1: median (16/31) Computing stats ... group 1/1: median (17/31) Computing stats ... group 1/1: median (18/31) Computing stats ... group 1/1: median (19/31) Computing stats ... group 1/1: median (20/31) Computing stats ... group 1/1: median (21/31) Computing stats ... group 1/1: median (22/31) Computing stats ... group 1/1: median (23/31) Computing stats ... group 1/1: median (24/31) Computing stats ... group 1/1: median (25/31) Computing stats ... group 1/1: median (26/31) Computing stats ... group 1/1: median (27/31) Computing stats ... group 1/1: median (28/31) Computing stats ... group 1/1: median (29/31) Computing stats ... group 1/1: median (30/31) Computing stats ... group 1/1: median (31/31) Computing stats ... group 1/1: iqr Computing stats ... group 1/1: iqr (1/31) Computing stats ... group 1/1: iqr (2/31) Computing stats ... group 1/1: iqr (3/31) Computing stats ... group 1/1: iqr (4/31) Computing stats ... group 1/1: iqr (5/31) Computing stats ... group 1/1: iqr (6/31) Computing stats ... group 1/1: iqr (7/31) Computing stats ... group 1/1: iqr (8/31) Computing stats ... group 1/1: iqr (9/31) Computing stats ... group 1/1: iqr (10/31) Computing stats ... group 1/1: iqr (11/31) Computing stats ... group 1/1: iqr (12/31) Computing stats ... group 1/1: iqr (13/31) Computing stats ... group 1/1: iqr (14/31) Computing stats ... group 1/1: iqr (15/31) Computing stats ... group 1/1: iqr (16/31) Computing stats ... group 1/1: iqr (17/31) Computing stats ... group 1/1: iqr (18/31) Computing stats ... group 1/1: iqr (19/31) Computing stats ... group 1/1: iqr (20/31) Computing stats ... group 1/1: iqr (21/31) Computing stats ... group 1/1: iqr (22/31) Computing stats ... group 1/1: iqr (23/31) Computing stats ... group 1/1: iqr (24/31) Computing stats ... group 1/1: iqr (25/31) Computing stats ... group 1/1: iqr (26/31) Computing stats ... group 1/1: iqr (27/31) Computing stats ... group 1/1: iqr (28/31) Computing stats ... group 1/1: iqr (29/31) Computing stats ... group 1/1: iqr (30/31) Computing stats ... group 1/1: iqr (31/31) Computing stats ... group 1/1: iqr (1/31) Computing stats ... group 1/1: iqr (2/31) Computing stats ... group 1/1: iqr (3/31) Computing stats ... group 1/1: iqr (4/31) Computing stats ... group 1/1: iqr (5/31) Computing stats ... group 1/1: iqr (6/31) Computing stats ... group 1/1: iqr (7/31) Computing stats ... group 1/1: iqr (8/31) Computing stats ... group 1/1: iqr (9/31) Computing stats ... group 1/1: iqr (10/31) Computing stats ... group 1/1: iqr (11/31) Computing stats ... group 1/1: iqr (12/31) Computing stats ... group 1/1: iqr (13/31) Computing stats ... group 1/1: iqr (14/31) Computing stats ... group 1/1: iqr (15/31) Computing stats ... group 1/1: iqr (16/31) Computing stats ... group 1/1: iqr (17/31) Computing stats ... group 1/1: iqr (18/31) Computing stats ... group 1/1: iqr (19/31) Computing stats ... group 1/1: iqr (20/31) Computing stats ... group 1/1: iqr (21/31) Computing stats ... group 1/1: iqr (22/31) Computing stats ... group 1/1: iqr (23/31) Computing stats ... group 1/1: iqr (24/31) Computing stats ... group 1/1: iqr (25/31) Computing stats ... group 1/1: iqr (26/31) Computing stats ... group 1/1: iqr (27/31) Computing stats ... group 1/1: iqr (28/31) Computing stats ... group 1/1: iqr (29/31) Computing stats ... group 1/1: iqr (30/31) Computing stats ... group 1/1: iqr (31/31) Computing stats ... group 1/1: stddev Computing stats ... group 1/1: stddev (1/31) Computing stats ... group 1/1: stddev (2/31) Computing stats ... group 1/1: stddev (3/31) Computing stats ... group 1/1: stddev (4/31) Computing stats ... group 1/1: stddev (5/31) Computing stats ... group 1/1: stddev (6/31) Computing stats ... group 1/1: stddev (7/31) Computing stats ... group 1/1: stddev (8/31) Computing stats ... group 1/1: stddev (9/31) Computing stats ... group 1/1: stddev (10/31) Computing stats ... group 1/1: stddev (11/31) Computing stats ... group 1/1: stddev (12/31) Computing stats ... group 1/1: stddev (13/31) Computing stats ... group 1/1: stddev (14/31) Computing stats ... group 1/1: stddev (15/31) Computing stats ... group 1/1: stddev (16/31) Computing stats ... group 1/1: stddev (17/31) Computing stats ... group 1/1: stddev (18/31) Computing stats ... group 1/1: stddev (19/31) Computing stats ... group 1/1: stddev (20/31) Computing stats ... group 1/1: stddev (21/31) Computing stats ... group 1/1: stddev (22/31) Computing stats ... group 1/1: stddev (23/31) Computing stats ... group 1/1: stddev (24/31) Computing stats ... group 1/1: stddev (25/31) Computing stats ... group 1/1: stddev (26/31) Computing stats ... group 1/1: stddev (27/31) Computing stats ... group 1/1: stddev (28/31) Computing stats ... group 1/1: stddev (29/31) Computing stats ... group 1/1: stddev (30/31) Computing stats ... group 1/1: stddev (31/31) Computing stats ... group 1/1: stddev (1/31) Computing stats ... group 1/1: stddev (2/31) Computing stats ... group 1/1: stddev (3/31) Computing stats ... group 1/1: stddev (4/31) Computing stats ... group 1/1: stddev (5/31) Computing stats ... group 1/1: stddev (6/31) Computing stats ... group 1/1: stddev (7/31) Computing stats ... group 1/1: stddev (8/31) Computing stats ... group 1/1: stddev (9/31) Computing stats ... group 1/1: stddev (10/31) Computing stats ... group 1/1: stddev (11/31) Computing stats ... group 1/1: stddev (12/31) Computing stats ... group 1/1: stddev (13/31) Computing stats ... group 1/1: stddev (14/31) Computing stats ... group 1/1: stddev (15/31) Computing stats ... group 1/1: stddev (16/31) Computing stats ... group 1/1: stddev (17/31) Computing stats ... group 1/1: stddev (18/31) Computing stats ... group 1/1: stddev (19/31) Computing stats ... group 1/1: stddev (20/31) Computing stats ... group 1/1: stddev (21/31) Computing stats ... group 1/1: stddev (22/31) Computing stats ... group 1/1: stddev (23/31) Computing stats ... group 1/1: stddev (24/31) Computing stats ... group 1/1: stddev (25/31) Computing stats ... group 1/1: stddev (26/31) Computing stats ... group 1/1: stddev (27/31) Computing stats ... group 1/1: stddev (28/31) Computing stats ... group 1/1: stddev (29/31) Computing stats ... group 1/1: stddev (30/31) Computing stats ... group 1/1: stddev (31/31) Computing stats ... group 1/1: ops Computing stats ... group 1/1: ops (1/31) Computing stats ... group 1/1: ops (2/31) Computing stats ... group 1/1: ops (3/31) Computing stats ... group 1/1: ops (4/31) Computing stats ... group 1/1: ops (5/31) Computing stats ... group 1/1: ops (6/31) Computing stats ... group 1/1: ops (7/31) Computing stats ... group 1/1: ops (8/31) Computing stats ... group 1/1: ops (9/31) Computing stats ... group 1/1: ops (10/31) Computing stats ... group 1/1: ops (11/31) Computing stats ... group 1/1: ops (12/31) Computing stats ... group 1/1: ops (13/31) Computing stats ... group 1/1: ops (14/31) Computing stats ... group 1/1: ops (15/31) Computing stats ... group 1/1: ops (16/31) Computing stats ... group 1/1: ops (17/31) Computing stats ... group 1/1: ops (18/31) Computing stats ... group 1/1: ops (19/31) Computing stats ... group 1/1: ops (20/31) Computing stats ... group 1/1: ops (21/31) Computing stats ... group 1/1: ops (22/31) Computing stats ... group 1/1: ops (23/31) Computing stats ... group 1/1: ops (24/31) Computing stats ... group 1/1: ops (25/31) Computing stats ... group 1/1: ops (26/31) Computing stats ... group 1/1: ops (27/31) Computing stats ... group 1/1: ops (28/31) Computing stats ... group 1/1: ops (29/31) Computing stats ... group 1/1: ops (30/31) Computing stats ... group 1/1: ops (31/31) Computing stats ... group 1/1: ops (1/31) Computing stats ... group 1/1: ops (2/31) Computing stats ... group 1/1: ops (3/31) Computing stats ... group 1/1: ops (4/31) Computing stats ... group 1/1: ops (5/31) Computing stats ... group 1/1: ops (6/31) Computing stats ... group 1/1: ops (7/31) Computing stats ... group 1/1: ops (8/31) Computing stats ... group 1/1: ops (9/31) Computing stats ... group 1/1: ops (10/31) Computing stats ... group 1/1: ops (11/31) Computing stats ... group 1/1: ops (12/31) Computing stats ... group 1/1: ops (13/31) Computing stats ... group 1/1: ops (14/31) Computing stats ... group 1/1: ops (15/31) Computing stats ... group 1/1: ops (16/31) Computing stats ... group 1/1: ops (17/31) Computing stats ... group 1/1: ops (18/31) Computing stats ... group 1/1: ops (19/31) Computing stats ... group 1/1: ops (20/31) Computing stats ... group 1/1: ops (21/31) Computing stats ... group 1/1: ops (22/31) Computing stats ... group 1/1: ops (23/31) Computing stats ... group 1/1: ops (24/31) Computing stats ... group 1/1: ops (25/31) Computing stats ... group 1/1: ops (26/31) Computing stats ... group 1/1: ops (27/31) Computing stats ... group 1/1: ops (28/31) Computing stats ... group 1/1: ops (29/31) Computing stats ... group 1/1: ops (30/31) Computing stats ... group 1/1: ops (31/31) Computing stats ... group 1/1: ops: outliers Computing stats ... group 1/1: ops: outliers (1/31) Computing stats ... group 1/1: ops: outliers (2/31) Computing stats ... group 1/1: ops: outliers (3/31) Computing stats ... group 1/1: ops: outliers (4/31) Computing stats ... group 1/1: ops: outliers (5/31) Computing stats ... group 1/1: ops: outliers (6/31) Computing stats ... group 1/1: ops: outliers (7/31) Computing stats ... group 1/1: ops: outliers (8/31) Computing stats ... group 1/1: ops: outliers (9/31) Computing stats ... group 1/1: ops: outliers (10/31) Computing stats ... group 1/1: ops: outliers (11/31) Computing stats ... group 1/1: ops: outliers (12/31) Computing stats ... group 1/1: ops: outliers (13/31) Computing stats ... group 1/1: ops: outliers (14/31) Computing stats ... group 1/1: ops: outliers (15/31) Computing stats ... group 1/1: ops: outliers (16/31) Computing stats ... group 1/1: ops: outliers (17/31) Computing stats ... group 1/1: ops: outliers (18/31) Computing stats ... group 1/1: ops: outliers (19/31) Computing stats ... group 1/1: ops: outliers (20/31) Computing stats ... group 1/1: ops: outliers (21/31) Computing stats ... group 1/1: ops: outliers (22/31) Computing stats ... group 1/1: ops: outliers (23/31) Computing stats ... group 1/1: ops: outliers (24/31) Computing stats ... group 1/1: ops: outliers (25/31) Computing stats ... group 1/1: ops: outliers (26/31) Computing stats ... group 1/1: ops: outliers (27/31) Computing stats ... group 1/1: ops: outliers (28/31) Computing stats ... group 1/1: ops: outliers (29/31) Computing stats ... group 1/1: ops: outliers (30/31) Computing stats ... group 1/1: ops: outliers (31/31) Computing stats ... group 1/1: ops: rounds Computing stats ... group 1/1: ops: rounds (1/31) Computing stats ... group 1/1: ops: rounds (2/31) Computing stats ... group 1/1: ops: rounds (3/31) Computing stats ... group 1/1: ops: rounds (4/31) Computing stats ... group 1/1: ops: rounds (5/31) Computing stats ... group 1/1: ops: rounds (6/31) Computing stats ... group 1/1: ops: rounds (7/31) Computing stats ... group 1/1: ops: rounds (8/31) Computing stats ... group 1/1: ops: rounds (9/31) Computing stats ... group 1/1: ops: rounds (10/31) Computing stats ... group 1/1: ops: rounds (11/31) Computing stats ... group 1/1: ops: rounds (12/31) Computing stats ... group 1/1: ops: rounds (13/31) Computing stats ... group 1/1: ops: rounds (14/31) Computing stats ... group 1/1: ops: rounds (15/31) Computing stats ... group 1/1: ops: rounds (16/31) Computing stats ... group 1/1: ops: rounds (17/31) Computing stats ... group 1/1: ops: rounds (18/31) Computing stats ... group 1/1: ops: rounds (19/31) Computing stats ... group 1/1: ops: rounds (20/31) Computing stats ... group 1/1: ops: rounds (21/31) Computing stats ... group 1/1: ops: rounds (22/31) Computing stats ... group 1/1: ops: rounds (23/31) Computing stats ... group 1/1: ops: rounds (24/31) Computing stats ... group 1/1: ops: rounds (25/31) Computing stats ... group 1/1: ops: rounds (26/31) Computing stats ... group 1/1: ops: rounds (27/31) Computing stats ... group 1/1: ops: rounds (28/31) Computing stats ... group 1/1: ops: rounds (29/31) Computing stats ... group 1/1: ops: rounds (30/31) Computing stats ... group 1/1: ops: rounds (31/31) Computing stats ... group 1/1: ops: iterations Computing stats ... group 1/1: ops: iterations (1/31) Computing stats ... group 1/1: ops: iterations (2/31) Computing stats ... group 1/1: ops: iterations (3/31) Computing stats ... group 1/1: ops: iterations (4/31) Computing stats ... group 1/1: ops: iterations (5/31) Computing stats ... group 1/1: ops: iterations (6/31) Computing stats ... group 1/1: ops: iterations (7/31) Computing stats ... group 1/1: ops: iterations (8/31) Computing stats ... group 1/1: ops: iterations (9/31) Computing stats ... group 1/1: ops: iterations (10/31) Computing stats ... group 1/1: ops: iterations (11/31) Computing stats ... group 1/1: ops: iterations (12/31) Computing stats ... group 1/1: ops: iterations (13/31) Computing stats ... group 1/1: ops: iterations (14/31) Computing stats ... group 1/1: ops: iterations (15/31) Computing stats ... group 1/1: ops: iterations (16/31) Computing stats ... group 1/1: ops: iterations (17/31) Computing stats ... group 1/1: ops: iterations (18/31) Computing stats ... group 1/1: ops: iterations (19/31) Computing stats ... group 1/1: ops: iterations (20/31) Computing stats ... group 1/1: ops: iterations (21/31) Computing stats ... group 1/1: ops: iterations (22/31) Computing stats ... group 1/1: ops: iterations (23/31) Computing stats ... group 1/1: ops: iterations (24/31) Computing stats ... group 1/1: ops: iterations (25/31) Computing stats ... group 1/1: ops: iterations (26/31) Computing stats ... group 1/1: ops: iterations (27/31) Computing stats ... group 1/1: ops: iterations (28/31) Computing stats ... group 1/1: ops: iterations (29/31) Computing stats ... group 1/1: ops: iterations (30/31) Computing stats ... group 1/1: ops: iterations (31/31) ---------------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ---------------------------------------------------------------------------------------------------------------------------- +Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations +----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +test_subtract_metabolite_benchmark[gurobi] 18.8999 (1.0) 139.8220 (3.00) 21.0591 (1.0) 4.1279 (1.67) 20.6800 (1.0) 1.0306 (1.0) 21;37 47,485.4459 (1.0) 1152 1 +test_subtract_metabolite_benchmark[cplex] 19.0809 (1.01) 46.6610 (1.0) 21.6464 (1.03) 2.4711 (1.0) 20.8409 (1.01) 2.5450 (2.47) 102;19 46,197.1386 (0.97) 1185 1 +test_subtract_metabolite_benchmark[glpk] 19.6600 (1.04) 662.4860 (14.20) 23.7009 (1.13) 20.1015 (8.13) 22.4201 (1.08) 1.4799 (1.44) 8;95 42,192.5400 (0.89) 1106 1 +test_achr_sample_benchmark 1,117.2300 (59.11) 1,568.5140 (33.62) 1,168.1026 (55.47) 46.4729 (18.81) 1,157.1710 (55.96) 45.0010 (43.67) 42;13 856.0892 (0.02) 405 1 +test_change_objective_benchmark[optlang-glpk] 1,220.5720 (64.58) 3,527.9340 (75.61) 1,325.7814 (62.96) 105.3526 (42.63) 1,297.9920 (62.77) 66.5847 (64.61) 109;101 754.2721 (0.02) 875 1 +test_optgp_sample_benchmark 1,626.3350 (86.05) 1,938.9780 (41.55) 1,692.8406 (80.39) 48.0628 (19.45) 1,682.4360 (81.36) 60.2911 (58.50) 127;10 590.7231 (0.01) 415 1 +test_loopless_benchmark_after 6,558.4820 (347.01) 9,709.5721 (208.09) 7,905.0808 (375.38) 1,107.1869 (448.05) 8,287.4380 (400.75) 2,174.4457 (>1000.0) 26;0 126.5009 (0.00) 59 1 +test_loopless_benchmark_before 28,798.4919 (>1000.0) 36,273.1830 (777.38) 30,234.6496 (>1000.0) 1,930.5420 (781.24) 29,502.1790 (>1000.0) 1,020.4398 (990.17) 4;4 33.0746 (0.00) 21 1 +test_minimal_medium_mip_benchmark 28,799.3120 (>1000.0) 31,168.9939 (667.99) 29,592.5679 (>1000.0) 653.9693 (264.64) 29,443.2575 (>1000.0) 596.7165 (579.02) 5;2 33.7923 (0.00) 20 1 +test_minimal_medium_linear_benchmark 29,877.8419 (>1000.0) 31,857.6200 (682.75) 30,836.0026 (>1000.0) 609.8327 (246.78) 30,979.7720 (>1000.0) 1,114.5205 (>1000.0) 7;0 32.4296 (0.00) 20 1 +test_single_reaction_deletion_benchmark[glpk] 68,585.3540 (>1000.0) 76,632.2301 (>1000.0) 72,371.6526 (>1000.0) 2,106.3957 (852.40) 72,310.8490 (>1000.0) 2,801.9313 (>1000.0) 3;0 13.8176 (0.00) 13 1 +test_copy_benchmark[optlang-glpk] 131,051.6390 (>1000.0) 142,551.8061 (>1000.0) 135,975.0749 (>1000.0) 4,555.6209 (>1000.0) 133,714.9935 (>1000.0) 7,910.5935 (>1000.0) 3;0 7.3543 (0.00) 8 1 +test_deepcopy_benchmark 144,717.2600 (>1000.0) 182,469.0199 (>1000.0) 160,446.8930 (>1000.0) 14,099.4659 (>1000.0) 155,013.4980 (>1000.0) 19,722.9082 (>1000.0) 3;0 6.2326 (0.00) 7 1 +test_gpr_equality_benchmark 169,181.2529 (>1000.0) 173,178.2100 (>1000.0) 170,456.4952 (>1000.0) 1,453.8932 (588.35) 170,055.8420 (>1000.0) 1,263.4720 (>1000.0) 1;1 5.8666 (0.00) 6 1 +test_fastcc_benchmark[glpk] 321,607.0620 (>1000.0) 368,872.9330 (>1000.0) 339,728.2632 (>1000.0) 18,242.6473 (>1000.0) 333,378.4950 (>1000.0) 22,536.2597 (>1000.0) 1;0 2.9435 (0.00) 5 1 +test_achr_init_benchmark 346,591.8250 (>1000.0) 355,838.0930 (>1000.0) 350,393.0290 (>1000.0) 4,526.4247 (>1000.0) 347,452.5531 (>1000.0) 7,960.9345 (>1000.0) 1;0 2.8539 (0.00) 5 1 +test_optgp_init_benchmark 350,726.9841 (>1000.0) 364,487.5530 (>1000.0) 356,650.3554 (>1000.0) 5,725.4449 (>1000.0) 353,888.0330 (>1000.0) 8,913.0340 (>1000.0) 2;0 2.8039 (0.00) 5 1 +test_single_gene_deletion_fba_benchmark[glpk] 410,076.3490 (>1000.0) 456,451.7110 (>1000.0) 427,115.6874 (>1000.0) 17,536.2623 (>1000.0) 423,126.8730 (>1000.0) 17,277.9945 (>1000.0) 1;0 2.3413 (0.00) 5 1 +test_add_metabolite_benchmark[gurobi] 420,461.1890 (>1000.0) 428,020.8601 (>1000.0) 422,941.9682 (>1000.0) 2,973.2462 (>1000.0) 422,390.1870 (>1000.0) 2,957.5375 (>1000.0) 1;0 2.3644 (0.00) 5 1 +test_add_metabolite_benchmark[glpk] 425,090.4120 (>1000.0) 436,587.5991 (>1000.0) 431,007.4592 (>1000.0) 4,173.8848 (>1000.0) 430,520.7020 (>1000.0) 4,699.0340 (>1000.0) 2;0 2.3201 (0.00) 5 1 +test_add_metabolite_benchmark[cplex] 426,247.8231 (>1000.0) 432,642.2230 (>1000.0) 430,560.7472 (>1000.0) 2,501.2380 (>1000.0) 431,553.3120 (>1000.0) 2,215.5260 (>1000.0) 1;1 2.3226 (0.00) 5 1 +test_double_gene_deletion_benchmark 567,740.9170 (>1000.0) 686,539.0410 (>1000.0) 612,873.0438 (>1000.0) 46,049.3313 (>1000.0) 597,117.7950 (>1000.0) 57,534.5600 (>1000.0) 1;0 1.6317 (0.00) 5 1 +test_single_gene_deletion_linear_moma_benchmark[glpk] 996,422.8569 (>1000.0) 1,030,288.5800 (>1000.0) 1,016,559.8326 (>1000.0) 13,483.2129 (>1000.0) 1,022,875.0490 (>1000.0) 18,712.9540 (>1000.0) 2;0 0.9837 (0.00) 5 1 +test_pfba_benchmark[glpk] 1,244,716.3421 (>1000.0) 2,134,047.6390 (>1000.0) 1,493,588.5642 (>1000.0) 370,270.6884 (>1000.0) 1,375,467.1050 (>1000.0) 389,809.6265 (>1000.0) 1;0 0.6695 (0.00) 5 1 +test_gpr_symbolism_benchmark 1,296,757.0999 (>1000.0) 1,321,656.2710 (>1000.0) 1,310,616.3124 (>1000.0) 10,859.4422 (>1000.0) 1,310,259.1650 (>1000.0) 19,326.3792 (>1000.0) 2;0 0.7630 (0.00) 5 1 +test_single_gene_deletion_linear_room_benchmark[glpk] 1,479,491.9350 (>1000.0) 2,953,461.4340 (>1000.0) 1,834,555.6254 (>1000.0) 631,067.9748 (>1000.0) 1,538,429.0570 (>1000.0) 510,386.5885 (>1000.0) 1;1 0.5451 (0.00) 5 1 +test_geometric_fba_benchmark[glpk] 1,730,802.5779 (>1000.0) 1,796,292.6640 (>1000.0) 1,764,731.2132 (>1000.0) 25,041.0314 (>1000.0) 1,759,344.7710 (>1000.0) 34,800.6313 (>1000.0) 2;0 0.5667 (0.00) 5 1 +test_copy_benchmark_large_model[optlang-glpk] 2,744,070.5250 (>1000.0) 4,142,502.3320 (>1000.0) 3,506,270.1752 (>1000.0) 628,412.3359 (>1000.0) 3,817,744.1170 (>1000.0) 1,084,184.0443 (>1000.0) 2;0 0.2852 (0.00) 5 1 +test_flux_variability_loopless_benchmark[glpk] 2,763,909.3910 (>1000.0) 3,019,259.0890 (>1000.0) 2,890,029.2464 (>1000.0) 105,410.3460 (>1000.0) 2,868,906.0580 (>1000.0) 176,239.2180 (>1000.0) 2;0 0.3460 (0.00) 5 1 +test_double_reaction_deletion_benchmark 6,409,898.0600 (>1000.0) 6,623,824.3129 (>1000.0) 6,544,198.4514 (>1000.0) 92,527.3273 (>1000.0) 6,572,312.7450 (>1000.0) 152,556.6239 (>1000.0) 1;0 0.1528 (0.00) 5 1 +test_flux_variability_benchmark[glpk] 12,035,239.1760 (>1000.0) 15,016,469.8340 (>1000.0) 13,956,425.1130 (>1000.0) 1,172,480.2655 (>1000.0) 14,145,783.4090 (>1000.0) 1,434,889.3040 (>1000.0) 1;0 0.0717 (0.00) 5 1 +----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean -==== 511 passed, 27 skipped, 11 xfailed, 142 warnings in 807.42s (0:13:27) ===== +==== 511 passed, 27 skipped, 11 xfailed, 151 warnings in 687.47s (0:11:27) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1881,11 +1922,11 @@ Skipping SOURCES.txt running install_scripts debian/rules override_dh_install -make[1]: Entering directory '/build/python-cobra-0.26.2' +make[1]: Map '/build/python-cobra-0.26.2' wordt binnengegaan dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf -make[1]: Leaving directory '/build/python-cobra-0.26.2' +make[1]: Map '/build/python-cobra-0.26.2' wordt verlaten dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild @@ -1907,8 +1948,8 @@ dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.26.2-1_all.deb'. -dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.26.2-1_arm64.deb'. +dpkg-deb: pakket 'python-cobra-data' wordt gebouwd in '../python-cobra-data_0.26.2-1_all.deb'. +dpkg-deb: pakket 'python3-cobra' wordt gebouwd in '../python3-cobra_0.26.2-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.26.2-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.26.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1916,12 +1957,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6637/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6637/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/14085 and its subdirectories -I: Current time: Tue Jun 4 07:14:10 -12 2024 -I: pbuilder-time-stamp: 1717528450 +I: removing directory /srv/workspace/pbuilder/6637 and its subdirectories +I: Current time: Thu May 4 03:07:11 +14 2023 +I: pbuilder-time-stamp: 1683119231