Diff of the two buildlogs: -- --- b1/build.log 2023-05-31 23:20:25.014803382 +0000 +++ b2/build.log 2023-05-31 23:25:53.048434948 +0000 @@ -1,65 +1,8 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 2 14:51:12 -12 2024 -I: pbuilder-time-stamp: 1719975072 +I: Current time: Thu Jun 1 13:20:29 +14 2023 +I: pbuilder-time-stamp: 1685575229 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] -tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel: time stamp 2025-08-04 08:27:37 is 34364175.44678952 s in the future -tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel.other: time stamp 2025-08-04 08:27:37 is 34364175.44650682 s in the future -tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples: time stamp 2025-08-04 08:27:37 is 34364175.44633182 s in the future -tar: ./usr/share/doc/adduser/examples: time stamp 2025-08-04 08:27:37 is 34364175.44549592 s in the future -tar: ./usr/share/doc/adduser: time stamp 2025-08-04 08:27:37 is 34364175.44493788 s in the future -tar: ./usr/share/locale/ca/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.33547316 s in the future -tar: ./usr/share/locale/cs/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.30878846 s in the future -tar: ./usr/share/locale/da/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.28151908 s in the future -tar: ./usr/share/locale/de/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.25132972 s in the future -tar: ./usr/share/locale/es/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.19241442 s in the future -tar: ./usr/share/locale/eu/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.18735314 s in the future -tar: ./usr/share/locale/fr/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.10424652 s in the future -tar: ./usr/share/locale/gl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.09389538 s in the future -tar: ./usr/share/locale/hu/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.07598688 s in the future -tar: ./usr/share/locale/it/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.05198582 s in the future -tar: ./usr/share/locale/ja/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364175.02198924 s in the future -tar: ./usr/share/locale/ko/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.9981236 s in the future -tar: ./usr/share/locale/nb/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.96932096 s in the future -tar: ./usr/share/locale/nl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.93695882 s in the future -tar: ./usr/share/locale/pl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.90830074 s in the future -tar: ./usr/share/locale/pt/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.87385778 s in the future -tar: ./usr/share/locale/pt_BR/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.8492053 s in the future -tar: ./usr/share/locale/ru/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.77246272 s in the future -tar: ./usr/share/locale/sk/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.75794206 s in the future -tar: ./usr/share/locale/sv/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.70267424 s in the future -tar: ./usr/share/locale/uk/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.6117855 s in the future -tar: ./usr/share/locale/vi/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.5802535 s in the future -tar: ./usr/share/locale/zh_CN/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34364174.55187918 s in the future -tar: ./usr/share/man/de/man5: time stamp 2025-08-04 08:27:37 is 34364174.37446564 s in the future -tar: ./usr/share/man/fr/man5: time stamp 2025-08-04 08:27:37 is 34364174.35299348 s in the future -tar: ./usr/share/man/man5: time stamp 2025-08-04 08:27:37 is 34364174.2860334 s in the future -tar: ./usr/share/man/nl/man5: time stamp 2025-08-04 08:27:37 is 34364174.25735262 s in the future -tar: ./usr/share/man/nl/man8: time stamp 2025-08-04 08:27:37 is 34364174.25393068 s in the future -tar: ./usr/share/man/pt/man5: time stamp 2025-08-04 08:27:37 is 34364174.24031686 s in the future -tar: ./usr/share/man/pt/man8: time stamp 2025-08-04 08:27:37 is 34364174.23789706 s in the future -tar: ./usr/share/perl5/Debian: time stamp 2025-08-04 08:27:37 is 34364174.16536176 s in the future -tar: ./var/lib/apt/extended_states: time stamp 2025-08-04 08:27:37 is 34364170.99804302 s in the future -tar: ./var/lib/apt: time stamp 2025-08-04 08:27:37 is 34364170.99793442 s in the future -tar: ./var/lib/dpkg/info/adduser.list: time stamp 2025-08-04 08:27:37 is 34364170.89884146 s in the future -tar: ./var/lib/dpkg/info: time stamp 2025-08-04 08:27:37 is 34364170.89848868 s in the future -tar: ./var/lib/dpkg/updates: time stamp 2025-08-04 08:27:37 is 34364170.89837314 s in the future -tar: ./var/lib/dpkg/lock: time stamp 2025-08-04 08:27:37 is 34364170.89630624 s in the future -tar: ./var/lib/dpkg/triggers/Lock: time stamp 2025-08-04 08:27:37 is 34364170.89618712 s in the future -tar: ./var/lib/dpkg/status-old: time stamp 2025-08-04 08:27:37 is 34364170.89319458 s in the future -tar: ./var/lib/dpkg/status: time stamp 2025-08-04 08:27:37 is 34364170.89163042 s in the future -tar: ./var/lib/dpkg: time stamp 2025-08-04 08:27:37 is 34364170.89156478 s in the future -tar: ./var/cache/apt/archives/partial: time stamp 2025-08-04 08:27:36 is 34364169.89024562 s in the future -tar: ./var/cache/apt/archives: time stamp 2025-08-04 08:27:39 is 34364172.89015542 s in the future -tar: ./var/log/apt/term.log: time stamp 2025-08-04 08:27:37 is 34364170.86880416 s in the future -tar: ./var/log/apt/history.log: time stamp 2025-08-04 08:27:37 is 34364170.8680774 s in the future -tar: ./var/log/apt/eipp.log.xz: time stamp 2025-08-04 08:27:36 is 34364169.86795524 s in the future -tar: ./var/log/apt: time stamp 2025-08-04 08:27:36 is 34364169.8679041 s in the future -tar: ./var/log/dpkg.log: time stamp 2025-08-04 08:27:37 is 34364170.86718408 s in the future -tar: ./usr/sbin: time stamp 2025-08-04 08:27:37 is 34364170.64868362 s in the future -tar: ./usr/share/man/man8: time stamp 2025-08-04 08:27:37 is 34364170.64799784 s in the future -tar: ./usr/share/man/fr/man8: time stamp 2025-08-04 08:27:37 is 34364170.64782218 s in the future -tar: ./usr/share/man/de/man8: time stamp 2025-08-04 08:27:37 is 34364170.64770638 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -73,7 +16,7 @@ I: copying [./python-pbcore_2.1.2+dfsg.orig.tar.xz] I: copying [./python-pbcore_2.1.2+dfsg-5.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Jan 7 03:59:55 2023 -12 +gpgv: Signature made Sun Jan 8 05:59:55 2023 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -89,52 +32,84 @@ dpkg-source: info: applying numpy_1.24.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/25982/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2579/tmp/hooks/D01_modify_environment starting +debug: Running on codethink10-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 1 13:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2579/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2579/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' - DISTRIBUTION='bookworm' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='25982' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2579 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YIdbUOph/pbuilderrc_yL8p --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YIdbUOph/b1 --logfile b1/build.log python-pbcore_2.1.2+dfsg-5.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YIdbUOph/pbuilderrc_vPF3 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YIdbUOph/b2 --logfile b2/build.log --extrapackages usrmerge python-pbcore_2.1.2+dfsg-5.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink9-arm64 4.15.0-212-generic #223-Ubuntu SMP Tue May 23 13:09:17 UTC 2023 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-212-generic #223-Ubuntu SMP Tue May 23 13:09:17 UTC 2023 aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 26 2023 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/25982/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 27 00:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2579/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -372,7 +347,7 @@ Get: 168 http://deb.debian.org/debian bookworm/main arm64 python3-sphinx all 5.3.0-4 [549 kB] Get: 169 http://deb.debian.org/debian bookworm/main arm64 python3-uritools all 4.0.0-1 [25.3 kB] Get: 170 http://deb.debian.org/debian bookworm/main arm64 python3-xmlschema all 1.10.0-6 [177 kB] -Fetched 71.6 MB in 2s (31.9 MB/s) +Fetched 71.6 MB in 2s (40.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19611 files and directories currently installed.) @@ -1083,8 +1058,17 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-5_source.changes +I: user script /srv/workspace/pbuilder/2579/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +I: user script /srv/workspace/pbuilder/2579/tmp/hooks/A99_set_merged_usr finished +hostname: Temporary failure in name resolution +I: Running cd /build/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-5_source.changes dpkg-buildpackage: info: source package python-pbcore dpkg-buildpackage: info: source version 2.1.2+dfsg-5 dpkg-buildpackage: info: source distribution unstable @@ -1096,9 +1080,9 @@ debian/rules:28: warning: ignoring old recipe for target 'override_dh_auto_clean' dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/python-pbcore-2.1.2+dfsg' -debian/rules:55: warning: overriding recipe for target 'override_dh_auto_clean' -debian/rules:28: warning: ignoring old recipe for target 'override_dh_auto_clean' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt binnengegaan +debian/rules:55: Waarschuwing: er wordt voorbijgegaan aan recept voor doel 'override_dh_auto_clean' +debian/rules:28: Waarschuwing: oud recept voor doel 'override_dh_auto_clean' wordt genegeerd rm -f doc/pbcore.data.datasets.rst doc/pbcore.io.align.rst doc/pbcore.io.dataset.pyxb.rst rm -fr coverage.xml .eggs/README.txt .pytest_cache rm -rf .pybuild @@ -1106,7 +1090,7 @@ find . -name __pycache__ | xargs -r rm -rf rm -f .coverage nosetests.xml rm -rf pbcore.egg-info -make[1]: Leaving directory '/build/python-pbcore-2.1.2+dfsg' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt verlaten dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary @@ -1121,9 +1105,9 @@ warnings.warn( running config debian/rules override_dh_auto_build -make[1]: Entering directory '/build/python-pbcore-2.1.2+dfsg' -debian/rules:55: warning: overriding recipe for target 'override_dh_auto_clean' -debian/rules:28: warning: ignoring old recipe for target 'override_dh_auto_clean' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt binnengegaan +debian/rules:55: Waarschuwing: er wordt voorbijgegaan aan recept voor doel 'override_dh_auto_clean' +debian/rules:28: Waarschuwing: oud recept voor doel 'override_dh_auto_clean' wordt genegeerd dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead @@ -1292,7 +1276,7 @@ copying pbcore/data/datasets/subread.dataset.xml -> /build/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/subreadSetWithStats.xml -> /build/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets PYTHONPATH=/build/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build /usr/bin/make doc -make[2]: Entering directory '/build/python-pbcore-2.1.2+dfsg' +make[2]: Map '/build/python-pbcore-2.1.2+dfsg' wordt binnengegaan sphinx-apidoc -o doc/ pbcore/ && cd doc/ && make html File doc/pbcore.rst already exists, skipping. File doc/pbcore.chemistry.rst already exists, skipping. @@ -1304,7 +1288,7 @@ File doc/pbcore.model.rst already exists, skipping. File doc/pbcore.util.rst already exists, skipping. File doc/modules.rst already exists, skipping. -make[3]: Entering directory '/build/python-pbcore-2.1.2+dfsg/doc' +make[3]: Map '/build/python-pbcore-2.1.2+dfsg/doc' wordt binnengegaan sphinx-apidoc -o . -d 4 ../pbcore/ File ./pbcore.rst already exists, skipping. File ./pbcore.chemistry.rst already exists, skipping. @@ -1321,7 +1305,7 @@ making output directory... done loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='docs.python.org', port=80): Max retries exceeded with url: /objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='docs.python.org', port=80): Max retries exceeded with url: /objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Tijdelijk probleem in naamsherleiding')) building [mo]: targets for 0 po files that are out of date building [html]: targets for 11 source files that are out of date updating environment: [new config] 11 added, 0 changed, 0 removed @@ -1373,13 +1357,13 @@ The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. -make[3]: Leaving directory '/build/python-pbcore-2.1.2+dfsg/doc' -make[2]: Leaving directory '/build/python-pbcore-2.1.2+dfsg' -make[1]: Leaving directory '/build/python-pbcore-2.1.2+dfsg' +make[3]: Map '/build/python-pbcore-2.1.2+dfsg/doc' wordt verlaten +make[2]: Map '/build/python-pbcore-2.1.2+dfsg' wordt verlaten +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt verlaten debian/rules override_dh_auto_test -make[1]: Entering directory '/build/python-pbcore-2.1.2+dfsg' -debian/rules:55: warning: overriding recipe for target 'override_dh_auto_clean' -debian/rules:28: warning: ignoring old recipe for target 'override_dh_auto_clean' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt binnengegaan +debian/rules:55: Waarschuwing: er wordt voorbijgegaan aan recept voor doel 'override_dh_auto_clean' +debian/rules:28: Waarschuwing: oud recept voor doel 'override_dh_auto_clean' wordt genegeerd # we need to exclude tests requiring pbtestdata which is not packaged mkdir -p /tmp/tests_avoid mv `grep -l pbtestdata tests/*.py` /tmp/tests_avoid @@ -1429,295 +1413,295 @@ [gw0] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw1] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw2] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] - [gw4] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw3] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] - [gw6] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw5] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] + [gw4] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] + [gw6] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw7] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] gw0 [140] / gw1 [140] / gw2 [140] / gw3 [140] / gw4 [140] / gw5 [140] / gw6 [140] / gw7 [140] scheduling tests via LoadScopeScheduling tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range tests/test_dataset_run_split.py::test -tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties -[gw7] [ 0%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names -[gw7] [ 1%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names -[gw6] [ 2%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -tests/test_pbcore_io_BlasrIO.py::test_m4 -[gw0] [ 2%] SKIPPED tests/test_dataset_run_split.py::test -[gw3] [ 3%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations +[gw5] [ 0%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -[gw6] [ 4%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 -[gw1] [ 5%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +[gw4] [ 1%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +tests/test_pbcore_io_BlasrIO.py::test_m4 +[gw1] [ 2%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +[gw7] [ 2%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names +[gw7] [ 3%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -[gw7] [ 5%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -[gw5] [ 6%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range +[gw7] [ 4%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta +[gw0] [ 5%] SKIPPED tests/test_dataset_run_split.py::test +tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range +[gw6] [ 5%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ -[gw5] [ 7%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ +[gw4] [ 6%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 +[gw5] [ 7%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable +[gw6] [ 7%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ -[gw5] [ 7%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ -[gw3] [ 8%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable +[gw6] [ 8%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString -[gw5] [ 9%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString +[gw6] [ 9%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 -[gw5] [ 10%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 +[gw6] [ 10%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 -[gw5] [ 10%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +[gw6] [ 10%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len -[gw5] [ 11%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +[gw6] [ 11%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq -[gw4] [ 12%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +[gw6] [ 12%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw3] [ 12%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation -[gw4] [ 12%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation -[gw2] [ 13%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +[gw3] [ 13%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName -[gw4] [ 14%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName +[gw3] [ 14%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead -[gw5] [ 15%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw3] [ 15%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead +[gw2] [ 15%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation -[gw2] [ 15%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation +[gw2] [ 16%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName -[gw4] [ 16%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead [gw2] [ 17%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead -tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -[gw4] [ 17%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead -[gw2] [ 18%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead -tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam -[gw3] [ 19%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam -tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties tests/test_pbcore_io_BlasrIO.py::test_m5 -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference -[gw4] [ 20%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead -[gw2] [ 20%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference -[gw7] [ 21%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference -[gw6] [ 22%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 +[gw4] [ 17%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam +[gw5] [ 18%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 +[gw5] [ 19%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 +tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +[gw1] [ 20%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties +[gw0] [ 20%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties +tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 +[gw0] [ 21%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 +tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +[gw1] [ 22%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal +[gw6] [ 22%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 +[gw6] [ 23%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 +[gw2] [ 24%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead +[gw2] [ 25%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead +tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 +[gw5] [ 25%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 +tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii +tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +[gw0] [ 26%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +tests/test_pbcore_io_FofnIO.py::test_simple +[gw5] [ 27%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple +tests/test_pbcore_io_FofnIO.py::test_empty_lines +[gw3] [ 27%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference +[gw3] [ 28%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference +[gw3] [ 29%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +[gw3] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +[gw4] [ 30%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName +[gw4] [ 31%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById +[gw4] [ 32%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript +[gw3] [ 32%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments +[gw3] [ 33%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments +[gw7] [ 34%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ -[gw3] [ 22%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +[gw7] [ 35%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ -[gw3] [ 23%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +[gw1] [ 35%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str +[gw7] [ 36%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString -[gw3] [ 24%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString +[gw7] [ 37%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 -[gw3] [ 25%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 -[gw6] [ 25%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName -[gw0] [ 26%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs -[gw0] [ 27%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs -[gw4] [ 27%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +[gw7] [ 37%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 +[gw5] [ 38%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines +[gw1] [ 39%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +[gw1] [ 40%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +[gw1] [ 40%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers +[gw0] [ 41%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers +[gw4] [ 42%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice +[gw4] [ 42%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta +[gw4] [ 43%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -[gw3] [ 28%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -[gw4] [ 29%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript -[gw2] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +[gw7] [ 44%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 +[gw2] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +tests/test_pbcore_io_FofnIO.py::test_absolutifying +[gw5] [ 45%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +[gw6] [ 46%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference -[gw2] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +[gw5] [ 47%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +[gw2] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV -[gw2] [ 31%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -[gw5] [ 32%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 -[gw5] [ 32%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 -[gw1] [ 33%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping -tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -[gw1] [ 34%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +[gw2] [ 48%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript -[gw2] [ 35%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments -[gw7] [ 35%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 -[gw4] [ 36%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments -[gw4] [ 37%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len -[gw3] [ 37%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len +[gw7] [ 49%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq -[gw3] [ 38%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -[gw6] [ 39%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById -[gw6] [ 40%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition -[gw6] [ 40%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice -[gw6] [ 41%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -[gw6] [ 42%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -[gw2] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +[gw7] [ 50%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq +[gw2] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +[gw2] [ 51%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii -[gw0] [ 43%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -[gw0] [ 44%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -[gw5] [ 45%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 -tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -[gw7] [ 45%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -tests/test_pbcore_io_FofnIO.py::test_simple -[gw7] [ 46%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple -tests/test_pbcore_io_FofnIO.py::test_empty_lines -[gw7] [ 47%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -[gw0] [ 47%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -[gw0] [ 48%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 -[gw1] [ 49%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 -tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -[gw1] [ 50%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -[gw5] [ 50%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -[gw6] [ 51%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal -[gw3] [ 52%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get +[gw1] [ 52%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs -[gw3] [ 52%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ -[gw1] [ 53%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get -[gw0] [ 54%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get -[gw5] [ 55%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +[gw0] [ 52%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ +tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex +[gw4] [ 53%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord -tests/test_pbcore_io_FofnIO.py::test_absolutifying -[gw7] [ 55%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying +[gw5] [ 54%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations -[gw7] [ 56%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations -[gw6] [ 57%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -[gw3] [ 57%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff -[gw5] [ 58%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord -tests/test_pbdataset_split.py::TestDataSetSplit::test_split +[gw1] [ 55%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +[gw0] [ 55%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse +[gw5] [ 56%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse +[gw4] [ 57%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 +[gw6] [ 57%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv -[gw0] [ 59%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv -[gw1] [ 60%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse +[gw6] [ 58%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement -tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 -[gw6] [ 60%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 -tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd -tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy -[gw0] [ 61%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy -[gw1] [ 62%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement +[gw5] [ 59%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement -[gw3] [ 62%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff +[gw7] [ 60%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +tests/test_pbdataset_split.py::TestDataSetSplit::test_split +tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 +[gw0] [ 60%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -[gw1] [ 63%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement -[gw7] [ 64%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy +tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +[gw4] [ 61%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +[gw5] [ 62%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac +[gw5] [ 62%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac +[gw1] [ 63%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff +[gw1] [ 64%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file +[gw1] [ 65%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file +[gw6] [ 65%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac -[gw3] [ 65%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file -[gw1] [ 65%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error -[gw1] [ 66%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error +[gw5] [ 66%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -[gw1] [ 67%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -[gw6] [ 67%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +[gw5] [ 67%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error +[gw0] [ 67%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype -[gw6] [ 68%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +[gw0] [ 68%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix -[gw6] [ 69%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +[gw0] [ 69%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -[gw6] [ 70%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -[gw0] [ 70%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +[gw0] [ 70%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges +[gw4] [ 70%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming -[gw0] [ 71%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming +[gw3] [ 71%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +[gw4] [ 72%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -[gw0] [ 72%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index -[gw0] [ 72%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index -[gw5] [ 73%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split -tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -[gw2] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable -[gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry -[gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry -[gw4] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable -[gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore -[gw4] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable +[gw3] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry -[gw2] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore -[gw4] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default +[gw4] [ 73%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire +tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index +[gw3] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV -[gw2] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default -[gw4] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV -[gw2] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default +[gw3] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -[gw4] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +[gw4] [ 75%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index +[gw3] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts -[gw4] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts +[gw3] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName -[gw4] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName +[gw3] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam -[gw4] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam +[gw7] [ 78%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split +[gw3] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -[gw5] [ 85%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -[gw4] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity +tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +[gw3] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw4] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw5] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +[gw2] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable +[gw2] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry +[gw2] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion +[gw2] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore +[gw2] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default +[gw2] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default +[gw2] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default +[gw3] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +[gw7] [ 86%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +[gw7] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws -[gw5] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws +[gw7] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws -[gw5] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws +[gw7] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters -[gw5] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters +[gw7] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters -[gw5] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters +[gw7] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split -[gw5] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split +[gw7] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references -[gw5] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references +[gw7] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter -[gw5] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter +[gw7] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit -[gw5] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit +[gw7] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks -[gw5] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +[gw7] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split -[gw5] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split +[gw7] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows -[gw5] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows +[gw7] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split -[gw5] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split +[gw7] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name -[gw5] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name +[gw7] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split -[gw5] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +[gw7] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded -[gw5] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded +[gw7] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases -[gw5] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases +[gw7] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks -[gw5] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks +[gw7] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups -[gw5] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups +[gw7] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups =============================== warnings summary =============================== tests/test_pbcore_extract_bam_sequence.py: 1 warning @@ -1729,14 +1713,14 @@ /build/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:583: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return r.tostring().decode("ascii") -tests/test_pbcore_io_AlnFileReaders.py: 20 warnings - /build/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:368: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. - return y.tostring().decode("ascii") - tests/test_pbcore_io_FastqIO.py: 11 warnings /build/python-pbcore-2.1.2+dfsg/pbcore/io/FastqIO.py:239: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return (np.clip(a, 0, 93).astype(np.uint8) + 33).tostring().decode("ascii") +tests/test_pbcore_io_AlnFileReaders.py: 20 warnings + /build/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:368: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. + return y.tostring().decode("ascii") + tests/test_pbcore_io_AlnFileReaders.py: 14 warnings /build/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:535: DeprecationWarning: NumPy will stop allowing conversion of out-of-bound Python integers to integer arrays. The conversion of -1 to uint8 will fail in the future. For the old behavior, usually: @@ -1772,27 +1756,27 @@ Coverage XML written to file coverage.xml ============================= slowest 20 durations ============================= -1.11s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks -0.91s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split -0.85s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -0.76s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -0.63s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -0.42s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split -0.41s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split -0.36s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -0.26s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -0.23s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations -0.22s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -0.20s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -0.13s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows +1.20s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +1.13s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +0.94s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split +0.89s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +0.69s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +0.67s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split +0.56s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +0.43s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +0.37s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +0.25s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +0.14s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations 0.13s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -0.11s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +0.13s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows +0.13s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta +0.12s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +0.10s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +0.09s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers 0.09s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name -0.08s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -0.08s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers 0.06s call tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -0.06s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration -================ 122 passed, 18 skipped, 212 warnings in 23.79s ================ +0.05s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +================ 122 passed, 18 skipped, 212 warnings in 20.88s ================ # copy working test data into doc dir as user examples mkdir -p _tmp/usr/share/doc/python3-pbcore cp -a tests _tmp/usr/share/doc/python3-pbcore @@ -1800,7 +1784,7 @@ # move back ignored tests mv /tmp/tests_avoid/* tests rmdir /tmp/tests_avoid -make[1]: Leaving directory '/build/python-pbcore-2.1.2+dfsg' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt verlaten create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -2313,25 +2297,25 @@ Installing .open script to /build/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/bin I: pybuild pybuild:333: chmod -x /build/python-pbcore-2.1.2+dfsg/debian/python3-pbcore//usr/lib/python3.11/dist-packages/pbcore/data/datasets/*.xml debian/rules override_dh_install -make[1]: Entering directory '/build/python-pbcore-2.1.2+dfsg' -debian/rules:55: warning: overriding recipe for target 'override_dh_auto_clean' -debian/rules:28: warning: ignoring old recipe for target 'override_dh_auto_clean' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt binnengegaan +debian/rules:55: Waarschuwing: er wordt voorbijgegaan aan recept voor doel 'override_dh_auto_clean' +debian/rules:28: Waarschuwing: oud recept voor doel 'override_dh_auto_clean' wordt genegeerd dh_install mv /build/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/bin/.open /build/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/bin/pbopen rmdir /build/python-pbcore-2.1.2+dfsg/debian/python-pbcore-doc/usr/share/doc/python3-pbcore/html/_images/ -make[1]: Leaving directory '/build/python-pbcore-2.1.2+dfsg' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt verlaten debian/rules override_dh_installdocs -make[1]: Entering directory '/build/python-pbcore-2.1.2+dfsg' -debian/rules:55: warning: overriding recipe for target 'override_dh_auto_clean' -debian/rules:28: warning: ignoring old recipe for target 'override_dh_auto_clean' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt binnengegaan +debian/rules:55: Waarschuwing: er wordt voorbijgegaan aan recept voor doel 'override_dh_auto_clean' +debian/rules:28: Waarschuwing: oud recept voor doel 'override_dh_auto_clean' wordt genegeerd dh_installdocs -X _source -make[1]: Leaving directory '/build/python-pbcore-2.1.2+dfsg' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt verlaten debian/rules override_dh_installchangelogs -make[1]: Entering directory '/build/python-pbcore-2.1.2+dfsg' -debian/rules:55: warning: overriding recipe for target 'override_dh_auto_clean' -debian/rules:28: warning: ignoring old recipe for target 'override_dh_auto_clean' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt binnengegaan +debian/rules:55: Waarschuwing: er wordt voorbijgegaan aan recept voor doel 'override_dh_auto_clean' +debian/rules:28: Waarschuwing: oud recept voor doel 'override_dh_auto_clean' wordt genegeerd dh_installchangelogs CHANGELOG.org -make[1]: Leaving directory '/build/python-pbcore-2.1.2+dfsg' +make[1]: Map '/build/python-pbcore-2.1.2+dfsg' wordt verlaten dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild @@ -2346,8 +2330,8 @@ dpkg-gencontrol: warning: Depends field of package python-pbcore-doc: substitution variable ${sphinxdoc:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-pbcore' in '../python3-pbcore_2.1.2+dfsg-5_all.deb'. -dpkg-deb: building package 'python-pbcore-doc' in '../python-pbcore-doc_2.1.2+dfsg-5_all.deb'. +dpkg-deb: pakket 'python3-pbcore' wordt gebouwd in '../python3-pbcore_2.1.2+dfsg-5_all.deb'. +dpkg-deb: pakket 'python-pbcore-doc' wordt gebouwd in '../python-pbcore-doc_2.1.2+dfsg-5_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pbcore_2.1.2+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pbcore_2.1.2+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2355,12 +2339,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2579/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2579/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/25982 and its subdirectories -I: Current time: Tue Jul 2 14:56:47 -12 2024 -I: pbuilder-time-stamp: 1719975407 +I: removing directory /srv/workspace/pbuilder/2579 and its subdirectories +I: Current time: Thu Jun 1 13:25:52 +14 2023 +I: pbuilder-time-stamp: 1685575552