Diff of the two buildlogs: -- --- b1/build.log 2024-01-07 08:08:30.183740896 +0000 +++ b2/build.log 2024-01-07 08:32:14.553431056 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Feb 8 02:08:23 -12 2025 -I: pbuilder-time-stamp: 1739023703 +I: Current time: Sun Jan 7 22:08:47 +14 2024 +I: pbuilder-time-stamp: 1704614927 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -27,49 +27,81 @@ dpkg-source: info: applying set_R_LIBS_USER_and_SITE_in_Renviron.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/330709/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3212188/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 7 08:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3212188/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3212188/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='d3dda76f1fc846d8b28fd1e3acddea19' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='330709' - PS1='# ' - PS2='> ' + INVOCATION_ID=393a99d68eca414fac0cd5b10127c189 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3212188 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9qn6iERQ/pbuilderrc_F1Sl --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9qn6iERQ/b1 --logfile b1/build.log r-base_4.2.2.20221110-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.104:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9qn6iERQ/pbuilderrc_2zgU --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9qn6iERQ/b2 --logfile b2/build.log r-base_4.2.2.20221110-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.104:3128 I: uname -a - Linux codethink03-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash @@ -127,15 +159,15 @@ -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts + -rwxr-xr-x 1 root root 68392 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 7 08:08 sh -> /bin/bash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 23 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Apr 6 2023 tar - -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile + -rwxr-xr-x 1 root root 67904 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 23 2023 ulockmgr_server @@ -155,7 +187,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/330709/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/3212188/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -596,7 +628,7 @@ Get: 323 http://deb.debian.org/debian bookworm/main arm64 xkb-data all 2.35.1-1 [764 kB] Get: 324 http://deb.debian.org/debian bookworm/main arm64 xserver-common all 2:21.1.7-3+deb12u2 [2382 kB] Get: 325 http://deb.debian.org/debian bookworm/main arm64 xvfb arm64 2:21.1.7-3+deb12u2 [3082 kB] -Fetched 995 MB in 11s (87.5 MB/s) +Fetched 995 MB in 11s (89.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18171 files and directories currently installed.) @@ -1630,8 +1662,8 @@ Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Feb 8 14:09:32 UTC 2025. -Universal Time is now: Sat Feb 8 14:09:32 UTC 2025. +Local time is now: Sun Jan 7 08:09:57 UTC 2024. +Universal Time is now: Sun Jan 7 08:09:57 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasound2-data (1.2.8-1) ... @@ -2142,7 +2174,11 @@ fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/r-base-4.2.2.20221110/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-base_4.2.2.20221110-2_source.changes +I: user script /srv/workspace/pbuilder/3212188/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/3212188/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-base-4.2.2.20221110/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-base_4.2.2.20221110-2_source.changes dpkg-buildpackage: info: source package r-base dpkg-buildpackage: info: source version 4.2.2.20221110-2 dpkg-buildpackage: info: source distribution unstable @@ -5191,10 +5227,10 @@ trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm -make[3]: Entering directory '/tmp/Rjavareconf.vqjEQb' +make[3]: Entering directory '/tmp/Rjavareconf.j56nAq' gcc -I"/build/reproducible-path/r-base-4.2.2.20221110/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest.o gcc -shared -L/build/reproducible-path/r-base-4.2.2.20221110/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/build/reproducible-path/r-base-4.2.2.20221110/lib -lR -make[3]: Leaving directory '/tmp/Rjavareconf.vqjEQb' +make[3]: Leaving directory '/tmp/Rjavareconf.j56nAq' JAVA_HOME : /usr/lib/jvm/default-java @@ -7930,7 +7966,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on refman.pdf (2305 pages, 5798249 bytes). +Output written on refman.pdf (2305 pages, 5798257 bytes). Transcript written on refman.log. This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file refman.idx..................done (14740 entries accepted, 36 rejected). @@ -10245,7 +10281,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on refman.pdf (2415 pages, 6535588 bytes). +Output written on refman.pdf (2415 pages, 6535450 bytes). Transcript written on refman.log. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. @@ -12549,7 +12585,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on refman.pdf (2415 pages, 6535500 bytes). +Output written on refman.pdf (2415 pages, 6535325 bytes). Transcript written on refman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info @@ -17296,7 +17332,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on fullrefman.pdf (2305 pages, 5798249 bytes). +Output written on fullrefman.pdf (2305 pages, 5798257 bytes). Transcript written on fullrefman.log. This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file fullrefman.idx..................done (14740 entries accepted, 36 rejected). @@ -19611,7 +19647,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on fullrefman.pdf (2415 pages, 6535588 bytes). +Output written on fullrefman.pdf (2415 pages, 6535450 bytes). Transcript written on fullrefman.log. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. @@ -21915,7 +21951,7 @@ fonts/type1/urw/times/utmbi8a.pfb> -Output written on fullrefman.pdf (2415 pages, 6535500 bytes). +Output written on fullrefman.pdf (2415 pages, 6535325 bytes). Transcript written on fullrefman.log. make[3]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc' @@ -22703,7 +22739,7 @@ make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/doc' make[4]: 'NEWS.rds' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.2.2.20221110/doc' --rw-r--r-- 1 root root 190768 Feb 8 02:18 NEWS.rds +-rw-rw-r-- 1 root root 190768 Jan 7 22:19 NEWS.rds make[4]: Entering directory '/build/reproducible-path/r-base-4.2.2.20221110/tests' checking package 'base' * using log directory '/build/reproducible-path/r-base-4.2.2.20221110/tests/base.Rcheck' @@ -23735,9 +23771,9 @@ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 2148 --rw-r--r-- 1 root root 1457180 Feb 8 02:30 libRmath.a --rwxr-xr-x 1 root root 738728 Feb 8 02:30 libRmath.so -drwxr-xr-x 2 root root 60 Feb 8 02:30 pkgconfig +-rw-rw-r-- 1 root root 1457180 Jan 7 22:31 libRmath.a +-rwxrwxr-x 1 root root 738728 Jan 7 22:31 libRmath.so +drwxr-xr-x 2 root root 60 Jan 7 22:31 pkgconfig renamed 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' @@ -23817,13 +23853,13 @@ dh_installdocs -v -pr-doc-html install -p -m0644 debian/copyright debian/r-doc-html/usr/share/doc/r-doc-html/copyright install -m0755 -d debian/r-doc-html/usr/share/doc-base/ - install -p -m0644 debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-doc-html.r-extensions - install -p -m0644 debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-doc-html.r-ints + install -p -m0644 debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-doc-html.r-admin + install -p -m0644 debian/r-doc-html.doc-base.faq debian/r-doc-html/usr/share/doc-base/r-doc-html.r-faq install -p -m0644 debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-doc-html.r-intro install -p -m0644 debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-doc-html.r-data - install -p -m0644 debian/r-doc-html.doc-base.faq debian/r-doc-html/usr/share/doc-base/r-doc-html.r-faq install -p -m0644 debian/r-doc-html.doc-base.lang debian/r-doc-html/usr/share/doc-base/r-doc-html.r-language - install -p -m0644 debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-doc-html.r-admin + install -p -m0644 debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-doc-html.r-extensions + install -p -m0644 debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-doc-html.r-ints dh_installchangelogs -i dh_installdirs -pr-base-dev usr/share/R/debian install -p -m 0755 debian/r-cran.mk \ @@ -23835,10 +23871,10 @@ dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'r-base' in '../r-base_4.2.2.20221110-2_all.deb'. -dpkg-deb: building package 'r-base-html' in '../r-base-html_4.2.2.20221110-2_all.deb'. dpkg-deb: building package 'r-base-dev' in '../r-base-dev_4.2.2.20221110-2_all.deb'. -dpkg-deb: building package 'r-doc-info' in '../r-doc-info_4.2.2.20221110-2_all.deb'. +dpkg-deb: building package 'r-base-html' in '../r-base-html_4.2.2.20221110-2_all.deb'. dpkg-deb: building package 'r-doc-pdf' in '../r-doc-pdf_4.2.2.20221110-2_all.deb'. +dpkg-deb: building package 'r-doc-info' in '../r-doc-info_4.2.2.20221110-2_all.deb'. dpkg-deb: building package 'r-doc-html' in '../r-doc-html_4.2.2.20221110-2_all.deb'. dpkg-deb: building package 'r-recommended' in '../r-recommended_4.2.2.20221110-2_all.deb'. dpkg-genbuildinfo --build=binary -O../r-base_4.2.2.20221110-2_arm64.buildinfo @@ -23848,12 +23884,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3212188/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3212188/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/330709 and its subdirectories -I: Current time: Sat Feb 8 02:31:28 -12 2025 -I: pbuilder-time-stamp: 1739025088 +I: removing directory /srv/workspace/pbuilder/3212188 and its subdirectories +I: Current time: Sun Jan 7 22:32:13 +14 2024 +I: pbuilder-time-stamp: 1704616333