Diff of the two buildlogs: -- --- b1/build.log 2024-01-07 05:25:38.876922408 +0000 +++ b2/build.log 2024-01-07 05:29:03.440007579 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jan 6 17:23:26 -12 2024 -I: pbuilder-time-stamp: 1704605006 +I: Current time: Sun Feb 9 01:48:42 +14 2025 +I: pbuilder-time-stamp: 1739015322 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -26,49 +26,81 @@ dpkg-source: info: unpacking twopaco_1.0.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2173455/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2564064/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 8 11:48 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2564064/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2564064/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='7c2331ba71d9441bab3a2b7edee315ea' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2173455' - PS1='# ' - PS2='> ' + INVOCATION_ID=4a84421416854860b814495e9a5b9105 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2564064 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XG45XT5G/pbuilderrc_Th5i --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XG45XT5G/b1 --logfile b1/build.log twopaco_1.0.0+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.104:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XG45XT5G/pbuilderrc_oC5O --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XG45XT5G/b2 --logfile b2/build.log twopaco_1.0.0+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.104:3128 I: uname -a - Linux codethink02-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash @@ -126,15 +158,15 @@ -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 68392 Jul 28 23:46 run-parts + -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Feb 8 11:48 sh -> /bin/bash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 23 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Apr 6 2023 tar - -rwxr-xr-x 1 root root 67904 Jul 28 23:46 tempfile + -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 23 2023 ulockmgr_server @@ -154,7 +186,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/2173455/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2564064/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -250,7 +282,7 @@ Get: 52 http://deb.debian.org/debian bookworm/main arm64 libtbb12 arm64 2021.8.0-2 [57.7 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libtbb-dev arm64 2021.8.0-2 [192 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] -Fetched 33.7 MB in 0s (108 MB/s) +Fetched 33.7 MB in 0s (99.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18171 files and directories currently installed.) @@ -481,7 +513,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/2564064/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/2564064/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package twopaco dpkg-buildpackage: info: source version 1.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -529,43 +565,43 @@ -- Build files have been written to: /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu dh_auto_build -O--sourcedir=src cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[2]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/depend -make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/depend -make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphdump/CMakeFiles/graphdump.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/depend +make[3]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor/CMakeFiles/twopaco.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt verlaten make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/build -make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt verlaten +make[3]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/build -make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -[ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -[ 21%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -[ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -[ 35%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -[ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp +make[3]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan +[ 7%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp -[ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o +[ 14%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o +[ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp +[ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o +[ 35%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp +[ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp +[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp +[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o +[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp +[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o +[ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp [ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o @@ -573,18 +609,18 @@ [ 92%] Linking CXX executable graphdump cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -o graphdump -ltbb -lpthread -make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt verlaten [ 92%] Built target graphdump [100%] Linking CXX executable twopaco cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/graphconstructor && /usr/bin/cmake -E cmake_link_script CMakeFiles/twopaco.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o CMakeFiles/twopaco.dir/constructor.cpp.o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o CMakeFiles/twopaco.dir/compressedstring.cpp.o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o CMakeFiles/twopaco.dir/test.cpp.o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o CMakeFiles/twopaco.dir/common.cpp.o -o twopaco -ltbb -ltbbmalloc -ltbbmalloc_proxy -lpthread -make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt verlaten [100%] Built target twopaco -make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[2]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt verlaten /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt verlaten debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg' wordt binnengegaan obj-*/graphconstructor/twopaco --test -f 34 example/example.fa Test # 0 PASSED Test # 1 PASSED @@ -623,34 +659,34 @@ TwoPaCo::buildGraphMain:: allocated with scalable_malloc; freeing. TwoPaCo::buildGraphMain:: Calling scalable_allocation_command(TBBMALLOC_CLEAN_ALL_BUFFERS, 0); obj-*/graphdump/graphdump -f dot example/example.dbg -k 11 > example/example.dot -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg' wordt verlaten create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedir=src dh_prep -O--sourcedir=src dh_auto_install --destdir=debian/twopaco/ -O--sourcedir=src cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' -make[2]: Nothing to be done for 'preinstall'. -make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[2]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt binnengegaan +make[2]: Er hoeft niets gedaan te worden voor 'preinstall'. +make[2]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt verlaten Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/graphdump -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/twopaco -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-aarch64-linux-gnu' wordt verlaten dh_installdocs -O--sourcedir=src dh_installchangelogs -O--sourcedir=src debian/rules override_dh_installexamples -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg' wordt binnengegaan dh_installexamples --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg' wordt verlaten debian/rules override_dh_installman -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg' wordt binnengegaan dh_installman --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg' wordt verlaten dh_installsystemduser -O--sourcedir=src dh_perl -O--sourcedir=src dh_link -O--sourcedir=src @@ -658,7 +694,7 @@ dh_compress -O--sourcedir=src dh_fixperms -O--sourcedir=src debian/rules override_dh_missing -make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg' wordt binnengegaan dh_missing --list-missing dh_missing: warning: CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: common/dnachar.cpp exists in src but is not installed to anywhere @@ -734,7 +770,7 @@ Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. -make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' +make[1]: Map '/build/reproducible-path/twopaco-1.0.0+dfsg' wordt verlaten dh_dwz -a -O--sourcedir=src dh_strip -a -O--sourcedir=src dh_makeshlibs -a -O--sourcedir=src @@ -743,8 +779,8 @@ dh_gencontrol -O--sourcedir=src dh_md5sums -O--sourcedir=src dh_builddeb -O--sourcedir=src -dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_arm64.deb'. -dpkg-deb: building package 'twopaco-dbgsym' in '../twopaco-dbgsym_1.0.0+dfsg-1_arm64.deb'. +dpkg-deb: pakket 'twopaco' wordt gebouwd in '../twopaco_1.0.0+dfsg-1_arm64.deb'. +dpkg-deb: pakket 'twopaco-dbgsym' wordt gebouwd in '../twopaco-dbgsym_1.0.0+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../twopaco_1.0.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../twopaco_1.0.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -752,12 +788,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2564064/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2564064/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2173455 and its subdirectories -I: Current time: Sat Jan 6 17:25:37 -12 2024 -I: pbuilder-time-stamp: 1704605137 +I: removing directory /srv/workspace/pbuilder/2564064 and its subdirectories +I: Current time: Sun Feb 9 01:52:01 +14 2025 +I: pbuilder-time-stamp: 1739015521