Diff of the two buildlogs: -- --- b1/build.log 2023-05-05 06:11:51.842319319 +0000 +++ b2/build.log 2023-05-05 06:29:10.556718352 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu May 4 18:05:35 -12 2023 -I: pbuilder-time-stamp: 1683266735 +I: Current time: Fri May 5 20:12:12 +14 2023 +I: pbuilder-time-stamp: 1683267132 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz] I: copying [./baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Jan 15 19:23:47 2022 -12 +gpgv: Signature made Sun Jan 16 21:23:47 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -28,135 +28,167 @@ dpkg-source: info: applying fix_example.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/28601/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/15180/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 5 20:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/15180/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/15180/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='84828db928514e8db5edb16ad793ae01' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='28601' - PS1='# ' - PS2='> ' + INVOCATION_ID=880a9ff6b4f84fb5b848fe8c32bb57ac + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=15180 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/pbuilderrc_GzaQ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/b1 --logfile b1/build.log baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/pbuilderrc_y7uq --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/b2 --logfile b2/build.log --extrapackages usrmerge baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc' + SUDO_GID=116 + SUDO_UID=112 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux jtx1a 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-armmp #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/28601/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 5 20:16 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/15180/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -231,7 +263,7 @@ Get: 31 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf help2man armhf 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libtclap-dev armhf 1.2.5-1+b1 [3359 kB] -Fetched 21.6 MB in 2s (9525 kB/s) +Fetched 21.6 MB in 8s (2646 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -377,8 +409,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/baitfisher-1.2.7+git20211020.de26d5c+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/15180/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/15180/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/baitfisher-1.2.7+git20211020.de26d5c+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_source.changes dpkg-buildpackage: info: source package baitfisher dpkg-buildpackage: info: source version 1.2.7+git20211020.de26d5c+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -388,7 +431,7 @@ debian/rules clean dh clean dh_auto_clean - make -j3 clean + make -j4 clean make[1]: Entering directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' rm -f *.o rm -f BaitFisher-v1.2.8 @@ -401,16 +444,102 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j3 "INSTALL=install --strip-program=true" + make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher-helper.cpp -o bait-fisher-helper.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher.cpp -o bait-fisher.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Csequence_cluster_and_center_sequence.cpp -o Csequence_cluster_and_center_sequence.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mydir-unix.cpp -o mydir-unix.o In file included from bait-fisher-helper.cpp:31: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ +In file included from CSequence_Mol2_1.h:50, + from GFF-class.h:34, + from bait-fisher.cpp:30: +CFile/CFile2_1.h: In member function 'char CFile::getchar()': +CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 256 | register char c; + | ^ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': +CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 283 | register char c; + | ^ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': +CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 300 | register char c; + | ^ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': +CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 321 | register char c; + | ^ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': +CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 340 | register char c; + | ^ +CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 342 | register char local_general_ambig = toupper(general_ambig); + | ^~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': +CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 424 | register char c; + | ^ +CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 425 | register char c_upper; + | ^~~~~~~ +CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 426 | register char local_general_ambig = general_ambig; + | ^~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled + | ^~~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled + | ^~~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 431 | register bool removegaps_bool = (pflag & removegaps); // handled + | ^~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 432 | register bool removestars_bool = (pflag & removestars); // handled + | ^~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled + | ^~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': +CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 571 | register char c; + | ^ +CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 572 | register char c_upper; + | ^~~~~~~ +CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 573 | register char local_general_ambig = general_ambig; + | ^~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled + | ^~~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 580 | register bool removegaps_bool = (pflag & removegaps); // handled + | ^~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled + | ^~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': +CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 685 | register char c; + | ^ +CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 687 | register char local_general_ambig = toupper(general_ambig); + | ^~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': +CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 764 | register char c; + | ^ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': +CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 825 | register char c; + | ^ In file included from CSequences2.h:42, from bait-fisher-helper.cpp:32: CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': @@ -504,9 +633,23 @@ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': +CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // + | ^~~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // + | ^~~~~~~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2627 | register bool removegaps_bool = (pflag & removegaps); // + | ^~~~~~~~~~~~~~~ +CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 2628 | register bool removestars_bool = (pflag & removestars); // + | ^~~~~~~~~~~~~~~~ In file included from CSequence_Mol2_1.h:50, - from GFF-class.h:34, - from bait-fisher.cpp:30: + from CSequences2.h:42, + from Csequence_cluster_and_center_sequence.h:44, + from Csequence_cluster_and_center_sequence.cpp:27: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; @@ -602,14 +745,28 @@ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ -In file included from CSequence_Mol2_1.h:50, - from CSequences2.h:42, - from Csequence_cluster_and_center_sequence.h:44, - from Csequence_cluster_and_center_sequence.cpp:27: +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-filter.cpp -o bait-filter.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c global-types-and-parameters.cpp -o global-types-and-parameters.o +In file included from /usr/include/c++/12/vector:70, + from faststring2.h:38, + from Csequence_cluster_and_center_sequence.h:36: +/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {cluster_node}; _Tp = cluster_node; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 439 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {cluster_node}; _Tp = cluster_node; _Alloc = std::allocator]': +/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from CBlastParser.h:47, + from CBaitRecord.h:37, + from bait-filter.cpp:33: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ +In file included from CSeqNameList.h:38, + from CBlastParser.h:52: CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; @@ -701,17 +858,6 @@ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/12/vector:70, - from faststring2.h:38, - from Csequence_cluster_and_center_sequence.h:36: -/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {cluster_node}; _Tp = cluster_node; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 439 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {cluster_node}; _Tp = cluster_node; _Alloc = std::allocator]': -/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/set:60, from Csequence_cluster_and_center_sequence.h:31: /usr/include/c++/12/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': @@ -802,7 +948,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mydir-unix.cpp -o mydir-unix.o In file included from /usr/include/c++/12/vector:70, from faststring2.h:38, from bait-fisher.cpp:28: @@ -810,116 +955,15 @@ /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-filter.cpp -o bait-filter.o /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -In file included from CBlastParser.h:47, - from CBaitRecord.h:37, - from bait-filter.cpp:33: -CFile/CFile2_1.h: In member function 'char CFile::getchar()': -CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 256 | register char c; - | ^ -In file included from CSeqNameList.h:38, - from CBlastParser.h:52: -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': -CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 283 | register char c; - | ^ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': -CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 300 | register char c; - | ^ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': -CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 321 | register char c; - | ^ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': -CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 340 | register char c; - | ^ -CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 342 | register char local_general_ambig = toupper(general_ambig); - | ^~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c global-types-and-parameters.cpp -o global-types-and-parameters.o -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': -CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 424 | register char c; - | ^ -CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 425 | register char c_upper; - | ^~~~~~~ -CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 426 | register char local_general_ambig = general_ambig; - | ^~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled - | ^~~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled - | ^~~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 431 | register bool removegaps_bool = (pflag & removegaps); // handled - | ^~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 432 | register bool removestars_bool = (pflag & removestars); // handled - | ^~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled - | ^~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': -CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 571 | register char c; - | ^ -CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 572 | register char c_upper; - | ^~~~~~~ -CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 573 | register char local_general_ambig = general_ambig; - | ^~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled - | ^~~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 580 | register bool removegaps_bool = (pflag & removegaps); // handled - | ^~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled - | ^~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': -CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 685 | register char c; - | ^ -CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 687 | register char local_general_ambig = toupper(general_ambig); - | ^~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': -CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 764 | register char c; - | ^ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': -CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 825 | register char c; - | ^ -CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': -CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // - | ^~~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // - | ^~~~~~~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2627 | register bool removegaps_bool = (pflag & removegaps); // - | ^~~~~~~~~~~~~~~ -CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 2628 | register bool removestars_bool = (pflag & removestars); // - | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void CSeqNameList::add_unchecked(const faststring&, unsigned int, double, unsigned int, unsigned int)' at CSeqNameList.h:91:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +g++ -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lstdc++ bait-filter.o global-types-and-parameters.o -o BaitFilter-v1.0.6 In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'unsigned int Csequence_loci_cluster_collection::append_center_sequences(std::vector&, std::vector&, std::vector&)' at Csequence_cluster_and_center_sequence.h:424:20, @@ -935,7 +979,6 @@ 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lstdc++ bait-fisher-helper.o bait-fisher.o Csequence_cluster_and_center_sequence.o mydir-unix.o -o BaitFisher-v1.2.8 -g++ -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lstdc++ bait-filter.o global-types-and-parameters.o -o BaitFilter-v1.0.6 make[1]: Leaving directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp @@ -986,12 +1029,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/15180/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/15180/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/28601 and its subdirectories -I: Current time: Thu May 4 18:11:30 -12 2023 -I: pbuilder-time-stamp: 1683267090 +I: removing directory /srv/workspace/pbuilder/15180 and its subdirectories +I: Current time: Fri May 5 20:28:40 +14 2023 +I: pbuilder-time-stamp: 1683268120