Diff of the two buildlogs: -- --- b1/build.log 2023-06-04 01:51:54.891373975 +0000 +++ b2/build.log 2023-06-04 02:32:29.548718351 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jun 3 13:24:16 -12 2023 -I: pbuilder-time-stamp: 1685841856 +I: Current time: Sun Jun 4 15:52:51 +14 2023 +I: pbuilder-time-stamp: 1685843571 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./genometools_1.6.2+ds.orig.tar.xz] I: copying [./genometools_1.6.2+ds-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Mon Nov 28 03:04:32 2022 -12 +gpgv: Signature made Tue Nov 29 05:04:32 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -36,135 +36,167 @@ dpkg-source: info: applying ignore-m32-m64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/19303/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/9668/tmp/hooks/D01_modify_environment starting +debug: Running on jtx1c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 4 15:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/9668/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/9668/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='2a2cb514b17b42859d2da3252b63edd0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='19303' - PS1='# ' - PS2='> ' + INVOCATION_ID=afb4857c0c6a47aca805d1bb7251998f + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=9668 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.x7nkLtts/pbuilderrc_XSob --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.x7nkLtts/b1 --logfile b1/build.log genometools_1.6.2+ds-3.dsc' - SUDO_GID='112' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.x7nkLtts/pbuilderrc_aPRl --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.x7nkLtts/b2 --logfile b2/build.log --extrapackages usrmerge genometools_1.6.2+ds-3.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32b 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/19303/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Jun 4 15:54 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/9668/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -501,7 +533,7 @@ Get: 241 http://deb.debian.org/debian bookworm/main armhf texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get: 242 http://deb.debian.org/debian bookworm/main armhf texlive-pictures all 2022.20230122-3 [15.8 MB] Get: 243 http://deb.debian.org/debian bookworm/main armhf texlive-latex-extra all 2022.20230122-4 [19.2 MB] -Fetched 685 MB in 1min 15s (9123 kB/s) +Fetched 685 MB in 59s (11.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libfftw3-double3:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) @@ -1541,8 +1573,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/genometools-1.6.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../genometools_1.6.2+ds-3_source.changes +I: user script /srv/workspace/pbuilder/9668/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/9668/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/genometools-1.6.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../genometools_1.6.2+ds-3_source.changes dpkg-buildpackage: info: source package genometools dpkg-buildpackage: info: source version 1.6.2+ds-3 dpkg-buildpackage: info: source distribution unstable @@ -1624,13 +1667,12 @@ make[1]: Entering directory '/build/genometools-1.6.2+ds' cp debian/doc-imgs/*png www/genometools.org/htdocs/images faketime -f "`TZ=UTC date -d @1669647294 +'%Y-%m-%d %H:%M:%S'`" dh_auto_build -- verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals - make -j3 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals + make -j4 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals make[2]: Entering directory '/build/genometools-1.6.2+ds' echo '[create obj/gt_config.h]' [create obj/gt_config.h] test -d obj || mkdir -p obj test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core (echo '#ifndef GT_CONFIG_H' ;\ echo '#define GT_CONFIG_H' ;\ echo '#define GT_CC "'`cc --version | head -n 1`\" ;\ @@ -1640,7 +1682,10 @@ -e 's/^/#define GT_CPPFLAGS "/'; \ echo '#define GT_VERSION "'`cat VERSION`\" ) > obj/gt_config.h cc -c src/core/alphabet.c -o obj/src/core/alphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/array.c -o obj/src/core/array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/array2dim.c -o obj/src/core/array2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cat VERSION | \ sed 's/\([0-9]*\)\.[0-9]*\.[0-9]*/#define GT_MAJOR_VERSION \1/' >> obj/gt_config.h cat VERSION | \ @@ -1649,116 +1694,113 @@ sed 's/[0-9]*\.[0-9]*\.\([0-9]*\)/#define GT_MICRO_VERSION \1/' >> obj/gt_config.h echo '#endif' >> obj/gt_config.h test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/array2dim.c -o obj/src/core/array2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/array2dim.c -o obj/src/core/array2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim.o -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/array2dim.c -o obj/src/core/array2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim.o cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim_sparse.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/array3dim.c -o obj/src/core/array3dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/array3dim.c -o obj/src/core/array3dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array3dim.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/basename.c -o obj/src/core/basename.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/basename.c -o obj/src/core/basename.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/basename.o +cc -c src/core/array3dim.c -o obj/src/core/array3dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array3dim.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bioseq.c -o obj/src/core/bioseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/array.c -o obj/src/core/array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array.o +cc -c src/core/basename.c -o obj/src/core/basename.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/basename.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/alphabet.o +cc -c src/core/array.c -o obj/src/core/array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_iterator.o -test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_col.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/alphabet.o +cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_iterator.o cc -c src/core/bioseq.c -o obj/src/core/bioseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq.o -cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitbuffer.o test -d obj/src/core || mkdir -p obj/src/core +test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop.o +cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitbuffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop32.o -cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop16.o +cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop16.o +cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop32.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bittab.c -o obj/src/core/bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop64.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop8.o -cc -c src/core/bittab.c -o obj/src/core/bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bittab.o +cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bool_matrix.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bsearch.c -o obj/src/core/bsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop64.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bool_matrix.o +cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_popcount.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/byte_select.c -o obj/src/core/byte_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_popcount.o +cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bsearch.o +cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_select.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_select.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop8.o cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackarray.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bsearch.o +cc -c src/core/bittab.c -o obj/src/core/bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bittab.o +cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring-int.o +cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackarray.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring16.o -cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring32.o +cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring-int.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring32.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring16.o cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc_lock.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator.o +cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc_lock.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring64.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_encseq.o +cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/colorspace.c -o obj/src/core/colorspace.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_simple.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/colorspace.c -o obj/src/core/colorspace.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/colorspace.o +cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_encseq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring8.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/compat.c -o obj/src/core/compat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/combinatorics.o -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/compat.c -o obj/src/core/compat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compat.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/complement.c -o obj/src/core/complement.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/combinatorics.o +cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compact_ulong_store.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/countingsort.c -o obj/src/core/countingsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compact_ulong_store.o -cc -c src/core/complement.c -o obj/src/core/complement.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/complement.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr.c -o obj/src/core/cstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/complement.c -o obj/src/core/complement.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/complement.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/countingsort.c -o obj/src/core/countingsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/countingsort.o @@ -1766,44 +1808,44 @@ cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_array.o cc -c src/core/cstr.c -o obj/src/core/cstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr.o +cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_table.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_table.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/desc_buffer.o -cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/csvline_reader.o +cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring8.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dlist.c -o obj/src/core/dlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/disc_distri.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/disc_distri.o +cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/desc_buffer.o +cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/csvline_reader.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dual-pivot-qsort.o -cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dyn_bittab.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dynalloc.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/eansi.c -o obj/src/core/eansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dynalloc.o cc -c src/core/eansi.c -o obj/src/core/eansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/eansi.o +cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dual-pivot-qsort.o +cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dyn_bittab.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq.c -o obj/src/core/encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/dlist.c -o obj/src/core/dlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dlist.o -cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ebzlib.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/dlist.c -o obj/src/core/dlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dlist.o +cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ebzlib.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_access_type.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_col.o +cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_access_type.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_metadata.o @@ -1812,44 +1854,44 @@ cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_ptr.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/endianess.c -o obj/src/core/endianess.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_col.o cc -c src/core/endianess.c -o obj/src/core/endianess.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/endianess.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/error.c -o obj/src/core/error.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_options.o -cc -c src/core/error.c -o obj/src/core/error.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/error.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/example.c -o obj/src/core/example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/example.c -o obj/src/core/example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example.o +cc -c src/core/error.c -o obj/src/core/error.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/error.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/example_a.c -o obj/src/core/example_a.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/example_a.c -o obj/src/core/example_a.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_a.o -cc -c src/core/example.c -o obj/src/core/example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/example_b.c -o obj/src/core/example_b.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/example_a.c -o obj/src/core/example_a.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_a.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ezlib.c -o obj/src/core/ezlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_options.o cc -c src/core/example_b.c -o obj/src/core/example_b.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_b.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fa.c -o obj/src/core/fa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/ezlib.c -o obj/src/core/ezlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ezlib.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta.c -o obj/src/core/fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/fasta.c -o obj/src/core/fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta.o +cc -c src/core/ezlib.c -o obj/src/core/ezlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ezlib.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader.o +cc -c src/core/fasta.c -o obj/src/core/fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_fsm.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_rec.o -cc -c src/core/fa.c -o obj/src/core/fa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fa.o +cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_fsm.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fastq.c -o obj/src/core/fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_seqit.o cc -c src/core/fastq.c -o obj/src/core/fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fastq.o +cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_seqit.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/file.c -o obj/src/core/file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core @@ -1858,36 +1900,36 @@ test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/gc_content.c -o obj/src/core/gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/file.c -o obj/src/core/file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/file.o +cc -c src/core/fa.c -o obj/src/core/fa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fa.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/grep.c -o obj/src/core/grep.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/gc_content.c -o obj/src/core/gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gc_content.o +cc -c src/core/grep.c -o obj/src/core/grep.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gtdatapath.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/hashmap.c -o obj/src/core/hashmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/grep.c -o obj/src/core/grep.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/grep.o +cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gtdatapath.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/hashtable.c -o obj/src/core/hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/hashmap.c -o obj/src/core/hashmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashmap.o +cc -c src/core/grep.c -o obj/src/core/grep.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/grep.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/init.c -o obj/src/core/init.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/init.c -o obj/src/core/init.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/init.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashtable.o +cc -c src/core/init.c -o obj/src/core/init.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/init.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/io.c -o obj/src/core/io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/io.c -o obj/src/core/io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/io.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/log.c -o obj/src/core/log.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/log.c -o obj/src/core/log.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/log.o +cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashtable.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/logger.c -o obj/src/core/logger.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/logger.c -o obj/src/core/logger.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/logger.o +cc -c src/core/log.c -o obj/src/core/log.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/log.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ma.c -o obj/src/core/ma.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/interval_tree.o +cc -c src/core/logger.c -o obj/src/core/logger.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/logger.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/mapspec.c -o obj/src/core/mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/ma.c -o obj/src/core/ma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ma.o @@ -1896,25 +1938,25 @@ cc -c src/core/mapspec.c -o obj/src/core/mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mapspec.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/interval_tree.o cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mathsupport.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_fingerprint.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_seqid.o -cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_encoder.o +cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_fingerprint.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_seqid.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/msort.c -o obj/src/core/msort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_tab.o +cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_encoder.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/multithread.c -o obj/src/core/multithread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/multithread.c -o obj/src/core/multithread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/multithread.o +cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_tab.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/option.c -o obj/src/core/option.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/msort.c -o obj/src/core/msort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/msort.o +cc -c src/core/multithread.c -o obj/src/core/multithread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/multithread.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/orf.c -o obj/src/core/orf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/orf.c -o obj/src/core/orf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/orf.o @@ -1923,19 +1965,19 @@ cc -c src/core/output_file.c -o obj/src/core/output_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/output_file.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/parseutils.c -o obj/src/core/parseutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/parseutils.c -o obj/src/core/parseutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/parseutils.o +cc -c src/core/msort.c -o obj/src/core/msort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/msort.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/password_entry.c -o obj/src/core/password_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/password_entry.c -o obj/src/core/password_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/password_entry.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/phase.c -o obj/src/core/phase.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/parseutils.c -o obj/src/core/parseutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/parseutils.o cc -c src/core/phase.c -o obj/src/core/phase.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/phase.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/process.c -o obj/src/core/process.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/process.c -o obj/src/core/process.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/process.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/progressbar.c -o obj/src/core/progressbar.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/option.c -o obj/src/core/option.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/option.o +cc -c src/core/process.c -o obj/src/core/process.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/process.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/progressbar.c -o obj/src/core/progressbar.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/progressbar.o @@ -1947,58 +1989,58 @@ cc -c src/core/quality.c -o obj/src/core/quality.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/quality.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/queue.c -o obj/src/core/queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/option.c -o obj/src/core/option.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/option.o cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort_r.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/queue.c -o obj/src/core/queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/queue.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/range.c -o obj/src/core/range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/queue.c -o obj/src/core/queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/queue.o cc -c src/core/range.c -o obj/src/core/range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/range.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/readmode.c -o obj/src/core/readmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/readmode.c -o obj/src/core/readmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/readmode.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/safearith.c -o obj/src/core/safearith.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/safearith.c -o obj/src/core/safearith.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/safearith.o -cc -c src/core/encseq.c -o obj/src/core/encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq.o +cc -c src/core/readmode.c -o obj/src/core/readmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/readmode.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/score_function.c -o obj/src/core/score_function.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/score_function.c -o obj/src/core/score_function.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_function.o +cc -c src/core/safearith.c -o obj/src/core/safearith.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/safearith.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/score_function.c -o obj/src/core/score_function.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_function.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq.c -o obj/src/core/seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/radix_sort.o +cc -c src/core/seq.c -o obj/src/core/seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_col.c -o obj/src/core/seq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq.c -o obj/src/core/seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq.o +cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_matrix.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_matrix.o +cc -c src/core/seq_col.c -o obj/src/core/seq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_col.o cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_info_cache.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_col.c -o obj/src/core/seq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_col.o +cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator.o +cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_sequence_buffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_sequence_buffer.o +cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_fastq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_fastq.o +cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/radix_sort.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fasta.o -cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_dust.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_dust.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_embl.o @@ -2008,63 +2050,63 @@ test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/showtime.c -o obj/src/core/showtime.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/showtime.c -o obj/src/core/showtime.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/showtime.o -cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_plain.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sig.c -o obj/src/core/sig.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_plain.o +cc -c src/core/sig.c -o obj/src/core/sig.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sig.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sig.c -o obj/src/core/sig.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sig.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/splitter.c -o obj/src/core/splitter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/spacepeak.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str.c -o obj/src/core/str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_gb.o +cc -c src/core/splitter.c -o obj/src/core/splitter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/splitter.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str_array.c -o obj/src/core/str_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/splitter.c -o obj/src/core/splitter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/splitter.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str_cache.c -o obj/src/core/str_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/str.c -o obj/src/core/str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str.o -cc -c src/core/str_array.c -o obj/src/core/str_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_array.o cc -c src/core/str_cache.c -o obj/src/core/str_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_cache.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/strand.c -o obj/src/core/strand.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/str_array.c -o obj/src/core/str_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_array.o +cc -c src/core/str.c -o obj/src/core/str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str.o +cc -c src/core/strand.c -o obj/src/core/strand.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strand.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/strcmp.c -o obj/src/core/strcmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/string_distri.c -o obj/src/core/string_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/strand.c -o obj/src/core/strand.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strand.o -cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strcmp.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/symbol.c -o obj/src/core/symbol.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strcmp.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/thread.c -o obj/src/core/thread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/string_distri.c -o obj/src/core/string_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/string_distri.o cc -c src/core/symbol.c -o obj/src/core/symbol.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/symbol.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/timer.c -o obj/src/core/timer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/string_distri.c -o obj/src/core/string_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/string_distri.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/thread.c -o obj/src/core/thread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/thread.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tool.c -o obj/src/core/tool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tokenizer.o -cc -c src/core/tool.c -o obj/src/core/tool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/tool.c -o obj/src/core/tool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool.o +cc -c src/core/timer.c -o obj/src/core/timer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/timer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/toolbox.c -o obj/src/core/toolbox.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/timer.c -o obj/src/core/timer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/timer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool_iterator.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tooldriver.o cc -c src/core/trans_table.c -o obj/src/core/trans_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/toolbox.o +cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tooldriver.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/translator.c -o obj/src/core/translator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/toolbox.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/unit_testing.o @@ -2076,169 +2118,169 @@ cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/versionfunc.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/warning.c -o obj/src/core/warning.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/translator.c -o obj/src/core/translator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/translator.o +cc -c src/core/trans_table.c -o obj/src/core/trans_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/trans_table.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/warning.c -o obj/src/core/warning.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/warning.o cc -c src/core/xansi.c -o obj/src/core/xansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/trans_table.c -o obj/src/core/trans_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/trans_table.o +cc -c src/core/warning.c -o obj/src/core/warning.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/warning.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xbsd.c -o obj/src/core/xbsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/translator.c -o obj/src/core/translator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/translator.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/xbsd.c -o obj/src/core/xbsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xbsd.o +cc -c src/core/xansi.c -o obj/src/core/xansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xansi.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xposix.c -o obj/src/core/xposix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xbzlib.o -cc -c src/core/xansi.c -o obj/src/core/xansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xansi.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xzlib.c -o obj/src/core/xzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/yarandom.c -o obj/src/core/yarandom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/yarandom.c -o obj/src/core/yarandom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/yarandom.o -cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xzlib.o -cc -c src/core/xposix.c -o obj/src/core/xposix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xposix.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/xposix.c -o obj/src/core/xposix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xposix.o +cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xzlib.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_introns_stream.o cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_introns_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segments_pile.o +cc -c src/core/encseq.c -o obj/src/core/encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/alignment.c -o obj/src/extended/alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segment.o +cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segments_pile.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/affinealign.o +cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_schema.o +cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/affinealign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_in_stream.o +cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_schema.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_out_stream.o +cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/assembly_stats_calculator.o -cc -c src/extended/alignment.c -o obj/src/extended/alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/alignment.o +cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_in_stream.o +cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/assembly_stats_calculator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitinstream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_gfflike.o -cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_parser.o -cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitoutstream.o +cc -c src/extended/alignment.c -o obj/src/extended/alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/alignment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitoutstream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_stream.o cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/buffer_stream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/blast_process_call.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_visitor.o +cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_parser.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/chain.c -o obj/src/extended/chain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/blast_process_call.o -cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_visitor.o -cc -c src/extended/chain.c -o obj/src/extended/chain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chain.o +cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_gfflike.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/chain.c -o obj/src/extended/chain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chain.o +cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/check_boundaries_visitor.o -cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chseqids_stream.o +cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chseqids_stream.o cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/coin_hmm.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/collect_ids_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/comment_node.o -cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set_uf.o +cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/collect_ids_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/comment_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq.o +cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set_uf.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/compressed_bitsequence.o cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_search_arguments.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/consensus_sa.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_creator.o +cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_gene.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_gene.o +cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_splice_form.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_splice_form.o cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_stream.o +cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/compressed_bitsequence.o cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_variable_strands.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/consensus_sa.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cstr_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_visitor.o +cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_creator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dice_hmm.o +cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_out_stream.o +cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dice_hmm.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_visitor.o +cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_stream.o +cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/editscript.c -o obj/src/extended/editscript.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_visitor.o @@ -2247,140 +2289,140 @@ cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/elias_gamma.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign_affinegapcost.o +cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign_affinegapcost.o cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc_header_io.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/eof_node.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/evaluator.o +cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/eof_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_sequence.o -cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc.o +cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/evaluator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_sequence.o +cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/fasta_header_iterator.o -cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_in_stream.o -cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/editscript.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc.o +cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index.o +cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index_memory.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_info.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index_memory.o +cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_observer.o -cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_info.o +cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_out_stream.o -cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_stream.o +cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/editscript.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gap_str.o +cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_escaping.o +cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gap_str.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream.o -cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/genome_node.o +cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_escaping.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node.o +cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/genome_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream_plain.o -cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_linesorted_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o -cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_output.o cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_out_stream.o +cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_output.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/globalchaining.o +cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_linesorted_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/golomb.c -o obj/src/extended/golomb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_visitor.o +cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/globalchaining.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtdatahelp.o cc -c src/extended/golomb.c -o obj/src/extended/golomb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/golomb.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtdatahelp.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_in_stream.o -cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_out_stream.o +cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hcr.c -o obj/src/extended/hcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_parser.o +cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hmm.c -o obj/src/extended/hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_parser.o +cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_parser.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hcr.o +cc -c src/extended/hmm.c -o obj/src/extended/hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hmm.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/hmm.c -o obj/src/extended/hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hmm.o +cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_parser.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hpol_processor.o +cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hcr.o cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/inter_feature_stream.o +cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset.c -o obj/src/extended/intset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hpol_processor.o cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/inter_feature_visitor.o -cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/huffcode.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended @@ -2388,115 +2430,115 @@ cc -c src/extended/intset.c -o obj/src/extended/intset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_16.o +cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/huffcode.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_32.o +cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_combined.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/io_function_pointers.o -cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_combined.o +cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_32.o +cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_16.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_8.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign.o +cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_8.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linspace_management.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/load_stream.o -cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/kmer_database.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luahelper.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o +cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/mapping.c -o obj/src/extended/mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luahelper.o +cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mapping.o +cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match.c -o obj/src/extended/match.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mapping.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luaserialize.o +cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/kmer_database.o cc -c src/extended/match.c -o obj/src/extended/match.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match.o +cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_blast.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_blast.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator.o +cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_open.o +cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_blast.o +cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_open.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_last.c -o obj/src/extended/match_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/match_last.c -o obj/src/extended/match_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_last.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_last.o cc -c src/extended/match_open.c -o obj/src/extended/match_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_sw.o +cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_blast.o +cc -c src/extended/match_open.c -o obj/src/extended/match_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_open.o +cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_last.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_open.c -o obj/src/extended/match_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_open.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_sw.o -cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_stream.o +cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_sw.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/maxcoordvalue.o cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_stream.o +cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/md5set.c -o obj/src/extended/md5set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/maxcoordvalue.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_visitor.o -cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_visitor.o -cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5set.o -cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_stream.o +cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multi_sanitizer_visitor.o cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/meta_node.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/mutate.c -o obj/src/extended/mutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mutate.o +cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5set.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mutate.o cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multieoplist.o +cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_stanza.o @@ -2505,40 +2547,40 @@ cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multieoplist.o cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_iterator.o -cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_parse_tree.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/permute_words.o cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_parse_tree.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/permute_words.o cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orphanage.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/priority_queue.o -cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/ranked_list.o +cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orphanage.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/priority_queue.o +cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/ranked_list.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rcr.c -o obj/src/extended/rcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/popcount_tab.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rdb.c -o obj/src/extended/rdb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rdb.c -o obj/src/extended/rdb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb.o +cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/popcount_tab.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_sqlite.o +cc -c src/extended/rdb.c -o obj/src/extended/rdb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rbtree.o +cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_sqlite.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reconstructalignment.o @@ -2547,22 +2589,22 @@ cc -c src/extended/region_node.c -o obj/src/extended/region_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_mapping.o cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node_builder.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regioncov_visitor.o -cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_mapping.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rcr.c -o obj/src/extended/rcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rcr.o +cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regular_seqid.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/reverse.c -o obj/src/extended/reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rbtree.o +cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regioncov_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rmq.c -o obj/src/extended/rmq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regular_seqid.o -cc -c src/extended/reverse.c -o obj/src/extended/reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reverse.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/reverse.c -o obj/src/extended/reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reverse.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/safe_popen.o @@ -2580,106 +2622,106 @@ cc -c src/extended/sampling.c -o obj/src/extended/sampling.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_iterator.o +cc -c src/extended/rcr.c -o obj/src/extended/rcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rcr.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_filter.o -cc -c src/extended/sampling.c -o obj/src/extended/sampling.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sampling.o -cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/scorehandler.o +cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/scorehandler.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_stream.o +cc -c src/extended/sampling.c -o obj/src/extended/sampling.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sampling.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_filter.o +cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_visitor.o cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2file.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_visitor.o -cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2seqnum_mapping.o +cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2file.o +cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqpos_classifier.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqpos_classifier.o +cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2seqnum_mapping.o +cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_add_stream.o -cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node.o cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_add_stream.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_stream.o cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/shredder.c -o obj/src/extended/shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_stream.o cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/set_source_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/shredder.c -o obj/src/extended/shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/shredder.o -cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/shredder.c -o obj/src/extended/shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/shredder.o cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_stream.o -cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sort_stream.o -test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sort_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_visitor.o +cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_stream.o +cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_results.o +cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_visitor.o -cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_visitor.o +cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_results.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splicedseq.o +cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splicedseq.o cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment.o -cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment_parsing.o -cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/squarealign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment_parsing.o +cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/squarealign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_visitor.o +cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/swalign.c -o obj/src/extended/swalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/string_matching.o -cc -c src/extended/swalign.c -o obj/src/extended/swalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/swalign.o +cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/swalign.c -o obj/src/extended/swalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/swalign.o cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/targetbest_select_stream.o +cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/string_matching.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stream_evaluator.o +cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/targetbest_select_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tidy_region_node_stream.o @@ -2689,145 +2731,146 @@ test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_bittabs.o -cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tag_value_map.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tag_value_map.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_counts.o -cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_evaluators.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_evaluators.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_used_exons.o -cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_exons.o +cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stream_evaluator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_exons.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker.o -cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_builtin.o +cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_used_exons.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tir_stream.o +cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_obo.o -cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tir_stream.o +cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_builtin.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_node.c -o obj/src/extended/type_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_graph.o +cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_obo.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uint64hashtable.o cc -c src/extended/type_node.c -o obj/src/extended/type_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_node.o cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/typecheck_info.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/union_find.c -o obj/src/extended/union_find.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_graph.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/visitor_stream.o -cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uniq_stream.o cc -c src/extended/union_find.c -o obj/src/extended/union_find.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/union_find.o +cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uniq_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/wtree.c -o obj/src/extended/wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uint64hashtable.o cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_entry.o cc -c src/extended/wtree.c -o obj/src/extended/wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_checker.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrfcheck_info.o +cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_checker.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree_encseq.o -cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_parse_tree.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/annotationsketch_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/alphabet_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/annotationsketch_lua.o +cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree_encseq.o +cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/bittab_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_parse_tree.o cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/bittab_lua.o -cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/canvas_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/cds_stream_lua.o +cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/canvas_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/cds_stream_lua.o cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/csa_stream_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/diagram_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_index_lua.o -cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_node_iterator_lua.o +cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/diagram_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_node_iterator_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_stream_lua.o -cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_visitor_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_index_lua.o +cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_visitor_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/encseq_lua.o -cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_stream_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_visitor_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_stream_lua.o cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gt_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_visitor_lua.o +cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gt_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_node_lua.o cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtcore_lua.o -cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtext_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/encseq_lua.o +cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtext_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/image_info_lua.o +cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/mathsupport_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/mathsupport_lua.o -cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/layout_lua.o +cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/image_info_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/layout_lua.o +cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_node_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/range_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/score_matrix_lua.o +cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/range_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/stream_evaluator_lua.o cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/region_mapping_lua.o +cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/stream_evaluator_lua.o +cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/score_matrix_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match @@ -2835,34 +2878,33 @@ cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/translate_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/asqg_writer.o -cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/apmeoveridx.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/bcktab.c -o obj/src/match/bcktab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/asqg_writer.o +cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/apmeoveridx.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bare-encseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cgr_spacedseed.o +cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bare-encseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/chainofin.c -o obj/src/match/chainofin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/chainofin.c -o obj/src/match/chainofin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chainofin.o +cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cgr_spacedseed.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cutendpfx.o +cc -c src/match/chainofin.c -o obj/src/match/chainofin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chainofin.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/bcktab.c -o obj/src/match/bcktab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bcktab.o -cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dbs_spaced_seeds.o +cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cutendpfx.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dbs_spaced_seeds.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chain2dim.o +cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagband-struct.o +cc -c src/match/bcktab.c -o obj/src/match/bcktab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bcktab.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/dist-short.c -o obj/src/match/dist-short.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagband-struct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/echoseq.c -o obj/src/match/echoseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/echoseq.c -o obj/src/match/echoseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/echoseq.o @@ -2871,190 +2913,190 @@ cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp-param.o +cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chain2dim.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-construct.o +cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context.o +cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-construct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-extinfo.o +cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp.o -cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagbandseed.o +cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-extinfo.o +cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-sass.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-sass.o +cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-construct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-param.o -cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-construct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-mrangealphabet.o +cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq.o -cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq.o +cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sa-common.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-mrangealphabet.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp.o cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sa-common.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sequencemultiread.o +cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqblocktranslate.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqblocktranslate.o +cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sequencemultiread.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-specialsrank.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqranges.o +cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagbandseed.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqranges.o cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixarray-interface.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixerator-interface.o -cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/encseq2offset.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixerator-interface.o +cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/enum-patt.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/enum-patt.o +cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/encseq2offset.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-voiditf.o -cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-bottomup.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-dfs.o +cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-lcpintervals.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-map.c -o obj/src/match/esa-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-dfs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-lcpintervals.o -cc -c src/match/esa-map.c -o obj/src/match/esa-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-map.o +cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-bottomup.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-voiditf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-minunique.o -cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-merge.o +cc -c src/match/esa-map.c -o obj/src/match/esa-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-map.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-scanprj.o +cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-merge.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-maxpairs.o +cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-scanprj.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-seqread.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-mmsearch.o +cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv-simple.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-maxpairs.o cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv-simple.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-mmsearch.o cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmitvs.o -cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv.o cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_lcpintervals_visitor.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-shulen.o +cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_lcpintervals_visitor.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmsk.o +cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-shulen.o cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_spmitvs_visitor.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_visitor.o +cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmsk.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-cache.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-psbuf.o -cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-accum.o +cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-cache.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-accum.o cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-insert.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-spacelog.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-spacelog.o cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-scan.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-tab.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-fwduni.o +cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-keyval.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-keyval.o +cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-fwduni.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-locate.o -cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-map.o +cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-tab.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-locate.o +cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-map.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mkindex.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mapspec.o +cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes.o +cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mkindex.o +cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-save.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-save.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-sufbwtstream.o +cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-generation.o +cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-sufbwtstream.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-polish.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-trimstat.o +cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-generation.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-eoplist.o +cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-trimstat.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/giextract.c -o obj/src/match/giextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/gfa_writer.o @@ -3063,19 +3105,19 @@ cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyedist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyfwdmat.o +cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-eoplist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hashfirstcodes.o +cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyfwdmat.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/giextract.c -o obj/src/match/giextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/giextract.o -cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-prune.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hplstore.c -o obj/src/match/hplstore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hlk-version.o +cc -c src/match/giextract.c -o obj/src/match/giextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/giextract.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hlk-version.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/hplstore.c -o obj/src/match/hplstore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hplstore.o @@ -3090,19 +3132,19 @@ cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalisw.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idx-limdfs.o +cc -c src/match/index_options.c -o obj/src/match/index_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/index_options.o cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initbasepower.o +cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idx-limdfs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/iter-window.c -o obj/src/match/iter-window.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/index_options.c -o obj/src/match/index_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/index_options.o -cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initeqsvec.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initeqsvec.o +cc -c src/match/iter-window.c -o obj/src/match/iter-window.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/iter-window.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/iter-window.c -o obj/src/match/iter-window.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/iter-window.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/kmer2string.o @@ -3111,79 +3153,79 @@ cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/lua_tools.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/marksubstring.o +cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-prune.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/merger-trie.o -cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/mssufpat.o -cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/karlin_altschul_stat.o -test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/marksubstring.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/myersapm.c -o obj/src/match/myersapm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/mssufpat.o +cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/merger-trie.o +cc -c src/match/myersapm.c -o obj/src/match/myersapm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/myersapm.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/nullcols.c -o obj/src/match/nullcols.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/nullcols.c -o obj/src/match/nullcols.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/nullcols.o -cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/optionargmode.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/nullcols.c -o obj/src/match/nullcols.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/nullcols.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/myersapm.c -o obj/src/match/myersapm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/myersapm.o +cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/optionargmode.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/karlin_altschul_stat.o cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pck-count-nodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckbucket.o -cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckdfs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pssm.c -o obj/src/match/pssm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/prsqualint.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckdfs.o cc -c src/match/pssm.c -o obj/src/match/pssm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pssm.o +cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckbucket.o test -d obj/src/match || mkdir -p obj/src/match +test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/querymatch.c -o obj/src/match/querymatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-align.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-display.o +cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-align.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/querymatch.c -o obj/src/match/querymatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch.o +cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-display.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-correct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-find-seldom.o cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/radixsort_str.o +cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-find-seldom.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-insert.o +cc -c src/match/querymatch.c -o obj/src/match/querymatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-sfx-partssuf.o +cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-insert.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-tab.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-sfx-partssuf.o cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-cntlist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-hpcorrect.o +cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-cntlist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes.o -cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfind-bottomup.o +cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-hpcorrect.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfind-bottomup.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigpaths.o @@ -3192,182 +3234,182 @@ cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-writer.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-graph.o +cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfinder.o +cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-bf.o +cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-errfind.o +cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-graph.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-errfind.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-bf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-dp.o +cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfinder.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-kmp.o +cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-dp.o cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-gusfield.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-pairwise.o +cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-kmp.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-pairwise.o +cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmfind.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmproc.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmfind.o -cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmlist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-twobitenc-editor.o +cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmproc.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-version.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-twobitenc-editor.o +cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-version.o +cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmlist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads_libraries_table.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads_libraries_table.o cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rectangle-store.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/revcompl.c -o obj/src/match/revcompl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/revcompl.c -o obj/src/match/revcompl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/revcompl.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend-iter.o +cc -c src/match/revcompl.c -o obj/src/match/revcompl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/revcompl.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend.o +cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend-iter.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads2twobit.o +cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend.o cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed_extend_parts.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqnumrelpos.o +cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads2twobit.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqabstract.o -cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-apfxlen.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqabstract.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bltrie.o +cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-apfxlen.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bentsedg.o -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-strgraph.o cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-copysort.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bltrie.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-enumcodes.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bentsedg.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lcpvalues.o +cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-strgraph.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lwcheck.o +cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lcpvalues.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-linlcp.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-maprange.o +cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lwcheck.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-mappedstr.o +cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-maprange.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-outprj.o cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-opt.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-mappedstr.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-diffcov.o +cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-outprj.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-radixsort.o +cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-diffcov.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-partssuf.o +cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-radixsort.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-run.o +cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-partssuf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-shortreadsort.o +cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-run.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-shortreadsort.o cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixgetset.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suftaborder.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-sain.o +cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suftaborder.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixer.o +cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-dfs.o +cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-divergence.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-encseq-gc.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-divergence.o +cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-encseq-gc.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-dfs.o +cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-genomediff.o +cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu_unitfile.o +cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-sain.o +cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixer.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spaced-seeds.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/specialrank.c -o obj/src/match/specialrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu_unitfile.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spmsuftab.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/squarededist.c -o obj/src/match/squarededist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/specialrank.c -o obj/src/match/specialrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/specialrank.o -cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-genomediff.o +cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spmsuftab.o +cc -c src/match/squarededist.c -o obj/src/match/squarededist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/squarededist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/substriter.c -o obj/src/match/substriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tagerator.c -o obj/src/match/tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/squarededist.c -o obj/src/match/squarededist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/squarededist.o -cc -c src/match/substriter.c -o obj/src/match/substriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/substriter.o +cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spaced-seeds.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/specialrank.c -o obj/src/match/specialrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/specialrank.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mappedstr.o +cc -c src/match/substriter.c -o obj/src/match/substriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/substriter.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-maxpairs.o -cc -c src/match/tagerator.c -o obj/src/match/tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tagerator.o +cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mappedstr.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-maxpairs.o +cc -c src/match/tagerator.c -o obj/src/match/tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tagerator.o +cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mergeesa.o +cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mtrieins.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mtrieins.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-pairwise.o -cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mergeesa.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match @@ -3375,196 +3417,196 @@ cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/turnwheels.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-map.o -cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/twobits2kmers.o +cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-pairwise.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mersplit.o +cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/twobits2kmers.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-map.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-occratio.o -cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-search.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/xdrop.c -o obj/src/match/xdrop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mersplit.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-search.o cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mkindex.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrclustering.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrdigest.o +cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrclustering.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrdigest.o cc -c src/match/xdrop.c -o obj/src/match/xdrop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/xdrop.o -test -d obj/src/ltr || mkdir -p obj/src/ltr -cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrharvest.o test -d obj/src/ltr || mkdir -p obj/src/ltr +test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_classify_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_classify_stream.o cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_four_char_motif.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_prepare_seq_visitor.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_input_check_visitor.o -cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_stream.o +cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_orf_annotator_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_orf_annotator_stream.o +cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_prepare_seq_visitor.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_refseq_match_stream.o -cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pbs_visitor.o -cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_file_out_stream.o +cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_refseq_match_stream.o +cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pbs_visitor.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_strand_assign_visitor.o +cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_file_out_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_ppt_visitor.o +cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_ppt_visitor.o cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_visitor.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pdom_visitor.o +cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_visitor.o cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/pdom_model_set.o +cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_visitor.o test -d obj/src/mgth || mkdir -p obj/src/mgth -cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/mgth || mkdir -p obj/src/mgth +cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_codon.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_stream.o +cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pdom_visitor.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/metagenomethreader.o +cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_stream.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/metagenomethreader.o cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_combinedscore.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_computepath.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_compute_gene_prediction.o -cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_reverse.o +cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_computepath.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_reverse.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_compute_gene_prediction.o cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_xmlparser.o -cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_outputwriter.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/block.o +cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_xmlparser.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_context.o -cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas.o +cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_outputwriter.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_context.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/color.o -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_file.o +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/coords.o cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/block.o +cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/coords.o +cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_example.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_script_wrapper.o -cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_gc_content.o +cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_example.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_script_wrapper.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/drawing_range.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/element.o +cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_gc_content.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/diagram.o +cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/element.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics.o +cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/diagram.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch.o +cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch_page.o -cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/image_info.o -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch_page.o +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics_cairo.o +cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line.o +cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/image_info.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/layout.o cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_bases.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_bases.o +cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/layout.o +cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_captions.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/luastyle.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_captions.o +cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/luastyle.o +cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics_cairo.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/rec_map.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator_cairo.o +cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator.o echo '[gathering public API symbols to obj/public_symbols.lst]' [gathering public API symbols to obj/public_symbols.lst] printf "VERSION {\n\tglobal:\n" > obj/public_symbols.lst @@ -3574,13 +3616,12 @@ cat src/core/alphabet.c src/core/array.c src/core/array2dim.c src/core/array2dim_sparse.c src/core/array3dim.c src/core/basename.c src/core/bioseq.c src/core/bioseq_col.c src/core/bioseq_iterator.c src/core/bitbuffer.c src/core/bitpackstringop.c src/core/bitpackstringop16.c src/core/bitpackstringop32.c src/core/bitpackstringop64.c src/core/bitpackstringop8.c src/core/bittab.c src/core/bool_matrix.c src/core/bsearch.c src/core/byte_popcount.c src/core/byte_select.c src/core/checkbitpackarray.c src/core/checkbitpackstring-int.c src/core/checkbitpackstring.c src/core/checkbitpackstring16.c src/core/checkbitpackstring32.c src/core/checkbitpackstring64.c src/core/checkbitpackstring8.c src/core/class_alloc.c src/core/class_alloc_lock.c src/core/codon_iterator.c src/core/codon_iterator_encseq.c src/core/codon_iterator_simple.c src/core/colorspace.c src/core/combinatorics.c src/core/compact_ulong_store.c src/core/compat.c src/core/complement.c src/core/countingsort.c src/core/cstr.c src/core/cstr_array.c src/core/cstr_table.c src/core/csvline_reader.c src/core/desc_buffer.c src/core/disc_distri.c src/core/dlist.c src/core/dual-pivot-qsort.c src/core/dyn_bittab.c src/core/dynalloc.c src/core/eansi.c src/core/ebzlib.c src/core/encseq.c src/core/encseq_access_type.c src/core/encseq_col.c src/core/encseq_metadata.c src/core/encseq_options.c src/core/encseq_ptr.c src/core/endianess.c src/core/error.c src/core/example.c src/core/example_a.c src/core/example_b.c src/core/ezlib.c src/core/fa.c src/core/fasta.c src/core/fasta_reader.c src/core/fasta_reader_fsm.c src/core/fasta_reader_rec.c src/core/fasta_reader_seqit.c src/core/fastq.c src/core/file.c src/core/fileutils.c src/core/gc_content.c src/core/grep.c src/core/gtdatapath.c src/core/hashmap.c src/core/hashtable.c src/core/init.c src/core/interval_tree.c src/core/io.c src/core/log.c src/core/logger.c src/core/ma.c src/core/mapspec.c src/core/mathsupport.c src/core/md5_encoder.c src/core/md5_fingerprint.c src/core/md5_seqid.c src/core/md5_tab.c src/core/msort.c src/core/multithread.c src/core/option.c src/core/orf.c src/core/output_file.c src/core/parseutils.c src/core/password_entry.c src/core/phase.c src/core/process.c src/core/progressbar.c src/core/qsort-ulong.c src/core/qsort_r.c src/core/quality.c src/core/queue.c src/core/radix_sort.c src/core/range.c src/core/readmode.c src/core/safearith.c src/core/score_function.c src/core/score_matrix.c src/core/seq.c src/core/seq_col.c src/core/seq_info_cache.c src/core/seq_iterator.c src/core/seq_iterator_fastq.c src/core/seq_iterator_sequence_buffer.c src/core/sequence_buffer.c src/core/sequence_buffer_dust.c src/core/sequence_buffer_embl.c src/core/sequence_buffer_fasta.c src/core/sequence_buffer_fastq.c src/core/sequence_buffer_gb.c src/core/sequence_buffer_plain.c src/core/showtime.c src/core/sig.c src/core/spacepeak.c src/core/splitter.c src/core/str.c src/core/str_array.c src/core/str_cache.c src/core/strand.c src/core/strcmp.c src/core/string_distri.c src/core/symbol.c src/core/thread.c src/core/timer.c src/core/tokenizer.c src/core/tool.c src/core/tool_iterator.c src/core/toolbox.c src/core/tooldriver.c src/core/trans_table.c src/core/translator.c src/core/unit_testing.c src/core/version.c src/core/versionfunc.c src/core/warning.c src/core/xansi.c src/core/xbsd.c src/core/xbzlib.c src/core/xposix.c src/core/xzlib.c src/core/yarandom.c src/extended/add_ids_stream.c src/extended/add_ids_visitor.c src/extended/add_introns_stream.c src/extended/affinealign.c src/extended/aligned_segment.c src/extended/aligned_segments_pile.c src/extended/alignment.c src/extended/anno_db_gfflike.c src/extended/anno_db_schema.c src/extended/array_in_stream.c src/extended/array_out_stream.c src/extended/assembly_stats_calculator.c src/extended/bed_in_stream.c src/extended/bed_parser.c src/extended/bitinstream.c src/extended/bitoutstream.c src/extended/blast_process_call.c src/extended/buffer_stream.c src/extended/cds_check_stream.c src/extended/cds_check_visitor.c src/extended/cds_stream.c src/extended/cds_visitor.c src/extended/chain.c src/extended/check_boundaries_visitor.c src/extended/chseqids_stream.c src/extended/clustered_set.c src/extended/clustered_set_uf.c src/extended/coin_hmm.c src/extended/collect_ids_visitor.c src/extended/comment_node.c src/extended/compressed_bitsequence.c src/extended/condenseq.c src/extended/condenseq_creator.c src/extended/condenseq_search_arguments.c src/extended/consensus_sa.c src/extended/csa_gene.c src/extended/csa_splice_form.c src/extended/csa_stream.c src/extended/csa_variable_strands.c src/extended/csa_visitor.c src/extended/cstr_iterator.c src/extended/diagonalbandalign.c src/extended/diagonalbandalign_affinegapcost.c src/extended/dice_hmm.c src/extended/dot_out_stream.c src/extended/dot_visitor.c src/extended/dup_feature_stream.c src/extended/dup_feature_visitor.c src/extended/editscript.c src/extended/elias_gamma.c src/extended/encdesc.c src/extended/encdesc_header_io.c src/extended/eof_node.c src/extended/evaluator.c src/extended/extract_feature_sequence.c src/extended/extract_feature_stream.c src/extended/extract_feature_visitor.c src/extended/fasta_header_iterator.c src/extended/feature_in_stream.c src/extended/feature_index.c src/extended/feature_index_memory.c src/extended/feature_info.c src/extended/feature_node.c src/extended/feature_node_iterator.c src/extended/feature_node_observer.c src/extended/feature_out_stream.c src/extended/feature_stream.c src/extended/feature_visitor.c src/extended/gap_str.c src/extended/genome_node.c src/extended/gff3_escaping.c src/extended/gff3_in_stream.c src/extended/gff3_in_stream_plain.c src/extended/gff3_linesorted_out_stream.c src/extended/gff3_numsorted_out_stream.c src/extended/gff3_out_stream.c src/extended/gff3_output.c src/extended/gff3_parser.c src/extended/gff3_visitor.c src/extended/globalchaining.c src/extended/golomb.c src/extended/gtdatahelp.c src/extended/gtf_in_stream.c src/extended/gtf_out_stream.c src/extended/gtf_parser.c src/extended/gtf_visitor.c src/extended/hcr.c src/extended/hmm.c src/extended/hpol_processor.c src/extended/huffcode.c src/extended/id_to_md5_stream.c src/extended/id_to_md5_visitor.c src/extended/inter_feature_stream.c src/extended/inter_feature_visitor.c src/extended/intset.c src/extended/intset_16.c src/extended/intset_32.c src/extended/intset_8.c src/extended/intset_combined.c src/extended/io_function_pointers.c src/extended/kmer_database.c src/extended/linearalign.c src/extended/linearalign_affinegapcost.c src/extended/linspace_management.c src/extended/load_stream.c src/extended/luahelper.c src/extended/luaserialize.c src/extended/mapping.c src/extended/match.c src/extended/match_blast.c src/extended/match_iterator.c src/extended/match_iterator_blast.c src/extended/match_iterator_last.c src/extended/match_iterator_open.c src/extended/match_iterator_sw.c src/extended/match_last.c src/extended/match_open.c src/extended/match_sw.c src/extended/match_visitor.c src/extended/maxcoordvalue.c src/extended/md5_to_id_stream.c src/extended/md5_to_id_visitor.c src/extended/md5set.c src/extended/merge_feature_stream.c src/extended/merge_feature_visitor.c src/extended/merge_stream.c src/extended/meta_node.c src/extended/multi_sanitizer_visitor.c src/extended/multieoplist.c src/extended/mutate.c src/extended/node_stream.c src/extended/node_visitor.c src/extended/obo_parse_tree.c src/extended/obo_stanza.c src/extended/orf_finder_stream.c src/extended/orf_finder_visitor.c src/extended/orf_iterator.c src/extended/orphanage.c src/extended/permute_words.c src/extended/popcount_tab.c src/extended/priority_queue.c src/extended/ranked_list.c src/extended/rbtree.c src/extended/rcr.c src/extended/rdb.c src/extended/rdb_sqlite.c src/extended/rdb_visitor.c src/extended/reconstructalignment.c src/extended/region_mapping.c src/extended/region_node.c src/extended/region_node_builder.c src/extended/regioncov_visitor.c src/extended/regular_seqid.c src/extended/reverse.c src/extended/rmq.c src/extended/safe_popen.c src/extended/sam_alignment.c src/extended/sam_query_name_iterator.c src/extended/samfile_encseq_mapping.c src/extended/samfile_iterator.c src/extended/sampling.c src/extended/scorehandler.c src/extended/script_filter.c src/extended/script_wrapper_stream.c src/extended/script_wrapper_visitor.c src/extended/select_stream.c src/extended/select_visitor.c src/extended/seqid2file.c src/extended/seqid2seqnum_mapping.c src/extended/seqpos_classifier.c src/extended/sequence_node.c src/extended/sequence_node_add_stream.c src/extended/sequence_node_out_stream.c src/extended/sequence_node_out_visitor.c src/extended/set_source_visitor.c src/extended/shredder.c src/extended/snp_annotator_stream.c src/extended/snp_annotator_visitor.c src/extended/sort_stream.c src/extended/spec_results.c src/extended/spec_visitor.c src/extended/splice_site_info_stream.c src/extended/splice_site_info_visitor.c src/extended/splicedseq.c src/extended/squarealign.c src/extended/sspliced_alignment.c src/extended/sspliced_alignment_parsing.c src/extended/stat_stream.c src/extended/stat_visitor.c src/extended/stream_evaluator.c src/extended/string_matching.c src/extended/swalign.c src/extended/tag_value_map.c src/extended/targetbest_select_stream.c src/extended/tidy_region_node_stream.c src/extended/tidy_region_node_visitor.c src/extended/tir_stream.c src/extended/transcript_bittabs.c src/extended/transcript_counts.c src/extended/transcript_evaluators.c src/extended/transcript_exons.c src/extended/transcript_used_exons.c src/extended/type_checker.c src/extended/type_checker_builtin.c src/extended/type_checker_obo.c src/extended/type_graph.c src/extended/type_node.c src/extended/typecheck_info.c src/extended/uint64hashtable.c src/extended/union_find.c src/extended/uniq_stream.c src/extended/visitor_stream.c src/extended/wtree.c src/extended/wtree_encseq.c src/extended/xrf_abbr_entry.c src/extended/xrf_abbr_parse_tree.c src/extended/xrf_checker.c src/extended/xrfcheck_info.c src/gtlua/alphabet_lua.c src/gtlua/annotationsketch_lua.c src/gtlua/bittab_lua.c src/gtlua/canvas_lua.c src/gtlua/cds_stream_lua.c src/gtlua/csa_stream_lua.c src/gtlua/diagram_lua.c src/gtlua/encseq_lua.c src/gtlua/feature_index_lua.c src/gtlua/feature_node_iterator_lua.c src/gtlua/feature_stream_lua.c src/gtlua/feature_visitor_lua.c src/gtlua/genome_node_lua.c src/gtlua/genome_stream_lua.c src/gtlua/genome_visitor_lua.c src/gtlua/gt_lua.c src/gtlua/gtcore_lua.c src/gtlua/gtext_lua.c src/gtlua/image_info_lua.c src/gtlua/layout_lua.c src/gtlua/mathsupport_lua.c src/gtlua/range_lua.c src/gtlua/region_mapping_lua.c src/gtlua/score_matrix_lua.c src/gtlua/stream_evaluator_lua.c src/gtlua/translate_lua.c src/match/apmeoveridx.c src/match/asqg_writer.c src/match/bare-encseq.c src/match/bcktab.c src/match/cgr_spacedseed.c src/match/chain2dim.c src/match/chainofin.c src/match/cutendpfx.c src/match/dbs_spaced_seeds.c src/match/diagband-struct.c src/match/diagbandseed.c src/match/dist-short.c src/match/echoseq.c src/match/eis-blockcomp-param.c src/match/eis-blockcomp.c src/match/eis-bwtseq-construct.c src/match/eis-bwtseq-context-param.c src/match/eis-bwtseq-context.c src/match/eis-bwtseq-extinfo.c src/match/eis-bwtseq-param.c src/match/eis-bwtseq-sass.c src/match/eis-bwtseq.c src/match/eis-encidxseq-construct.c src/match/eis-encidxseq-param.c src/match/eis-encidxseq.c src/match/eis-mrangealphabet.c src/match/eis-sa-common.c src/match/eis-seqblocktranslate.c src/match/eis-seqranges.c src/match/eis-sequencemultiread.c src/match/eis-specialsrank.c src/match/eis-suffixarray-interface.c src/match/eis-suffixerator-interface.c src/match/eis-voiditf.c src/match/encseq2offset.c src/match/enum-patt.c src/match/esa-bottomup.c src/match/esa-dfs.c src/match/esa-lcpintervals.c src/match/esa-map.c src/match/esa-maxpairs.c src/match/esa-merge.c src/match/esa-minunique.c src/match/esa-mmsearch.c src/match/esa-scanprj.c src/match/esa-seqread.c src/match/esa-shulen.c src/match/esa-splititv-simple.c src/match/esa-splititv.c src/match/esa-spmitvs.c src/match/esa-spmsk.c src/match/esa_lcpintervals_visitor.c src/match/esa_spmitvs_visitor.c src/match/esa_visitor.c src/match/firstcodes-accum.c src/match/firstcodes-cache.c src/match/firstcodes-insert.c src/match/firstcodes-psbuf.c src/match/firstcodes-scan.c src/match/firstcodes-spacelog.c src/match/firstcodes-tab.c src/match/firstcodes.c src/match/fmi-fwduni.c src/match/fmi-keyval.c src/match/fmi-locate.c src/match/fmi-map.c src/match/fmi-mapspec.c src/match/fmi-mkindex.c src/match/fmi-save.c src/match/fmi-sufbwtstream.c src/match/ft-eoplist.c src/match/ft-front-generation.c src/match/ft-front-prune.c src/match/ft-polish.c src/match/ft-trimstat.c src/match/gfa_writer.c src/match/giextract.c src/match/greedyedist.c src/match/greedyfwdmat.c src/match/hashfirstcodes.c src/match/hlk-version.c src/match/hplstore.c src/match/idx-limdfs.c src/match/idxlocali.c src/match/idxlocalidp.c src/match/idxlocalisw.c src/match/index_options.c src/match/initbasepower.c src/match/initeqsvec.c src/match/iter-window.c src/match/karlin_altschul_stat.c src/match/kmer2string.c src/match/lua_tools.c src/match/marksubstring.c src/match/merger-trie.c src/match/mssufpat.c src/match/myersapm.c src/match/nullcols.c src/match/optionargmode.c src/match/pck-count-nodes.c src/match/pckbucket.c src/match/pckdfs.c src/match/prsqualint.c src/match/pssm.c src/match/querymatch-align.c src/match/querymatch-display.c src/match/querymatch.c src/match/radixsort_str.c src/match/randomcodes-correct.c src/match/randomcodes-find-seldom.c src/match/randomcodes-hpcorrect.c src/match/randomcodes-insert.c src/match/randomcodes-sfx-partssuf.c src/match/randomcodes-tab.c src/match/randomcodes.c src/match/rdj-cntlist.c src/match/rdj-contfind-bottomup.c src/match/rdj-contfinder.c src/match/rdj-contigpaths.c src/match/rdj-contigs-graph.c src/match/rdj-contigs-writer.c src/match/rdj-errfind.c src/match/rdj-ovlfind-bf.c src/match/rdj-ovlfind-dp.c src/match/rdj-ovlfind-gusfield.c src/match/rdj-ovlfind-kmp.c src/match/rdj-pairwise.c src/match/rdj-spmfind.c src/match/rdj-spmlist.c src/match/rdj-spmproc.c src/match/rdj-strgraph.c src/match/rdj-twobitenc-editor.c src/match/rdj-version.c src/match/reads2twobit.c src/match/reads_libraries_table.c src/match/rectangle-store.c src/match/revcompl.c src/match/seed-extend-iter.c src/match/seed-extend.c src/match/seed_extend_parts.c src/match/seqabstract.c src/match/seqnumrelpos.c src/match/sfx-apfxlen.c src/match/sfx-bentsedg.c src/match/sfx-bltrie.c src/match/sfx-copysort.c src/match/sfx-diffcov.c src/match/sfx-enumcodes.c src/match/sfx-lcpvalues.c src/match/sfx-linlcp.c src/match/sfx-lwcheck.c src/match/sfx-mappedstr.c src/match/sfx-maprange.c src/match/sfx-opt.c src/match/sfx-outprj.c src/match/sfx-partssuf.c src/match/sfx-radixsort.c src/match/sfx-run.c src/match/sfx-sain.c src/match/sfx-shortreadsort.c src/match/sfx-suffixer.c src/match/sfx-suffixgetset.c src/match/sfx-suftaborder.c src/match/shu-dfs.c src/match/shu-divergence.c src/match/shu-encseq-gc.c src/match/shu-genomediff.c src/match/shu_unitfile.c src/match/spaced-seeds.c src/match/specialrank.c src/match/spmsuftab.c src/match/squarededist.c src/match/substriter.c src/match/tagerator.c src/match/test-mappedstr.c src/match/test-maxpairs.c src/match/test-mergeesa.c src/match/test-mtrieins.c src/match/test-pairwise.c src/match/turnwheels.c src/match/twobits2kmers.c src/match/tyr-map.c src/match/tyr-mersplit.c src/match/tyr-mkindex.c src/match/tyr-occratio.c src/match/tyr-search.c src/match/xdrop.c src/ltr/gt_ltrclustering.c src/ltr/gt_ltrdigest.c src/ltr/gt_ltrharvest.c src/ltr/ltr_classify_stream.c src/ltr/ltr_cluster_prepare_seq_visitor.c src/ltr/ltr_cluster_stream.c src/ltr/ltr_four_char_motif.c src/ltr/ltr_input_check_visitor.c src/ltr/ltr_orf_annotator_stream.c src/ltr/ltr_refseq_match_stream.c src/ltr/ltrdigest_file_out_stream.c src/ltr/ltrdigest_pbs_visitor.c src/ltr/ltrdigest_pdom_visitor.c src/ltr/ltrdigest_ppt_visitor.c src/ltr/ltrdigest_strand_assign_visitor.c src/ltr/ltrharvest_fasta_out_stream.c src/ltr/ltrharvest_fasta_out_visitor.c src/ltr/ltrharvest_stream.c src/ltr/ltrharvest_tabout_stream.c src/ltr/ltrharvest_tabout_visitor.c src/ltr/pdom_model_set.c src/mgth/metagenomethreader.c src/mgth/mg_codon.c src/mgth/mg_combinedscore.c src/mgth/mg_compute_gene_prediction.c src/mgth/mg_computepath.c src/mgth/mg_outputwriter.c src/mgth/mg_reverse.c src/mgth/mg_xmlparser.c src/annotationsketch/block.c src/annotationsketch/canvas.c src/annotationsketch/canvas_cairo.c src/annotationsketch/canvas_cairo_context.c src/annotationsketch/canvas_cairo_file.c src/annotationsketch/color.c src/annotationsketch/coords.c src/annotationsketch/custom_track.c src/annotationsketch/custom_track_example.c src/annotationsketch/custom_track_gc_content.c src/annotationsketch/custom_track_script_wrapper.c src/annotationsketch/diagram.c src/annotationsketch/drawing_range.c src/annotationsketch/element.c src/annotationsketch/graphics.c src/annotationsketch/graphics_cairo.c src/annotationsketch/gt_sketch.c src/annotationsketch/gt_sketch_page.c src/annotationsketch/image_info.c src/annotationsketch/layout.c src/annotationsketch/line.c src/annotationsketch/line_breaker.c src/annotationsketch/line_breaker_bases.c src/annotationsketch/line_breaker_captions.c src/annotationsketch/luastyle.c src/annotationsketch/rec_map.c src/annotationsketch/style.c src/annotationsketch/text_width_calculator.c src/annotationsketch/text_width_calculator_cairo.c src/annotationsketch/track.c | tr ' ' '\n' \ | grep -E '(gt_[0-9a-zA-Z_]+_p)(\[|\()' \ | cut -d'(' -f1 >> obj/public_symbols.lst.src -cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/track.o -test -d obj/src || mkdir -p obj/src -cc -c src/gt.c -o obj/src/gt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator_cairo.o for L in `cat obj/public_symbols.lst.src`; do \ printf "\t\t$L;\n" >> obj/public_symbols.lst; \ done; -cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/style.o +test -d obj/src || mkdir -p obj/src +cc -c src/gt.c -o obj/src/gt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 printf "\t\tgt_array_add_ptr;\n" >> obj/public_symbols.lst printf "\t\tgt_str_get_mem;\n" >> obj/public_symbols.lst printf '\tlocal: *;\n\t};\n' >> obj/public_symbols.lst @@ -3589,437 +3630,439 @@ cc -c src/gt.c -o obj/src/gt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gt.o test -d obj/src || mkdir -p obj/src cc -c src/gtt.c -o obj/src/gtt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/track.o test -d obj/src || mkdir -p obj/src cc -c src/interactive.c -o obj/src/interactive.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/interactive.c -o obj/src/interactive.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/interactive.o +cc -c src/gtt.c -o obj/src/gtt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtt.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtt.c -o obj/src/gtt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtt.o -cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_bed_to_gff3.o +cc -c src/interactive.c -o obj/src/interactive.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/interactive.o +cc -c src/gtr.c -o obj/src/gtr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtr.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_bed_to_gff3.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtr.c -o obj/src/gtr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtr.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_cds.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chseqids.o -cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chain2dim.o +cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/style.o cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_clean.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads.o +cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chain2dim.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_compress.o -cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_decompress.o +cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refcompress.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refcompress.o +cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_decompress.o +cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_compress.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refdecompress.o -cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compressedbits.o +cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refdecompress.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compressedbits.o +cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_compress.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_extract.o cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_compress.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_info.o -cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_blast.o +cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_extract.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_hmmsearch.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_search.o +cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_info.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_hmmsearch.o -cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_congruence.o +cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_search.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_congruence.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_consensus_sa.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_blast.o cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_csa.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dev.o -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_convertseq.o -cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dot.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dev.o cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dupfeat.o +cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dot.o +cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq.o +cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dupfeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bench.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq2spm.o -cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bitextract.o +cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_check.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bitextract.o +cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq2spm.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_check.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_decode.o -cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_encode.o +cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bench.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_md5.o +cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_decode.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_md5.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_encode.o cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_info.o +cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_eval.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_sample.o -cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_eval.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_sample.o cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractfeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extracttarget.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fastq_sample.o cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractseq.o +cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extracttarget.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_featureindex.o +cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fastq_sample.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fingerprint.o -cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gdiffcalc.o +cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_featureindex.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gdiffcalc.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3_to_gtf.o -cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_genomediff.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3.o +cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fingerprint.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3validator.o +cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_genomediff.o cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gtf_to_gff3.o +cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3validator.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_guessprot.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_id_to_md5.o +cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_guessprot.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_id_to_md5.o cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_idxlocali.o +cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_add.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_add.o -cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_hop.o -cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_split.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_split.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_interfeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_kmer_database.o +cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_hop.o cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_loccheck.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_kmer_database.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_magicmatch.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_linspace_align.o +cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_magicmatch.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matchtool.o -cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matstat.o +cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_md5_to_id.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_md5_to_id.o +cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matstat.o +cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matchtool.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_linspace_align.o cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_merge.o +cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergeesa.o +cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergefeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergeesa.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergefeat.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mgth.o cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfmindex.o -cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfeatureindex.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mgth.o cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mmapandread.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex.o +cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfeatureindex.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_orffinder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_integrity.o +cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_mkctxmap.o +cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_integrity.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_mkctxmap.o cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_trsuftab.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_search.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_parsexrf.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_paircmp.o -cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_patternmatch.o +cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_search.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_prebwt.o cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_paircmp.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner.o +cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_prebwt.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cgraph.o -cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_asqg.o +cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_patternmatch.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_assembly.o +cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_asqg.o +cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cgraph.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_correct.o cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cnttest.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_correct.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_overlap.o -cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_gfa.o +cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_assembly.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_gfa.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_graph.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_spmtest.o +cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_overlap.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_prefilter.o +cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_spmtest.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_regioncov.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_regioncov.o cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readreads.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sam_interface.o +cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readreads.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sain.o +cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sam_interface.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_script_filter.o -cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_repfind.o +cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sain.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_select.o -cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seq.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_repfind.o +cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seq.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seed_extend.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqfilter.o cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqids.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqfilter.o +cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seed_extend.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqmutate.o -cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqlensort.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqlensort.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqcorrect.o +cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqmutate.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtransform.o +cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqorder.o +cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqcorrect.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqorder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqstat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtranslate.o +cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqstat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sequniq.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtranslate.o cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shredder.o -cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_show_seedext.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shredder.o +cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shulen.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shulen.o +cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_show_seedext.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_skproto.o -cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_simreads.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_snpper.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_snpper.o +cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_skproto.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sfxmap.o +cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_simreads.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splicesiteinfo.o +cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_speck.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_speck.o +cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splicesiteinfo.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_stat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sfxmap.o cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splitfasta.o +cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_suffixerator.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_suffixerator.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tagerator.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_template.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sortbench.o -cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tallymer.o +cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tagerator.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_trieins.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tir.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_trieins.o cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_uniq.o +cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree.o +cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tallymer.o +cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sortbench.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/custom_stream.o -cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3sort.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree_bench.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/noop.c -o obj/src/examples/noop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree_bench.o +cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3sort.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3validator.o -cc -c src/examples/noop.c -o obj/src/examples/noop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/noop.o test -d obj/src/examples || mkdir -p obj/src/examples +cc -c src/examples/noop.c -o obj/src/examples/noop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/noop.o +cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3validator.o cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_constructed.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_constructed.o cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ctrack.o -cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ordering.o test -d lib || mkdir -p lib ar r lib/libgenometools.a obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_dust.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/dbs_spaced_seeds.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o ar: creating lib/libgenometools.a test -d lib || mkdir -p lib +cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ordering.o cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Wl,--version-script=obj/public_symbols.lst \ -Llib -shared \ -Wl,-soname,libgenometools.so.0 obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_dust.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/dbs_spaced_seeds.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o \ -o lib/libgenometools.so.0 -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 /usr/lib/libbam.a cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed.o -test -d bin || mkdir -p bin test -d bin/examples || mkdir -p bin/examples -cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/gt.o obj/src/gtr.o obj/src/gtt.o obj/src/interactive.o obj/src/tools/gt_bed_to_gff3.o obj/src/tools/gt_cds.o obj/src/tools/gt_chain2dim.o obj/src/tools/gt_chseqids.o obj/src/tools/gt_clean.o obj/src/tools/gt_compreads.o obj/src/tools/gt_compreads_compress.o obj/src/tools/gt_compreads_decompress.o obj/src/tools/gt_compreads_refcompress.o obj/src/tools/gt_compreads_refdecompress.o obj/src/tools/gt_compressedbits.o obj/src/tools/gt_condenseq.o obj/src/tools/gt_condenseq_blast.o obj/src/tools/gt_condenseq_compress.o obj/src/tools/gt_condenseq_extract.o obj/src/tools/gt_condenseq_hmmsearch.o obj/src/tools/gt_condenseq_info.o obj/src/tools/gt_condenseq_search.o obj/src/tools/gt_congruence.o obj/src/tools/gt_consensus_sa.o obj/src/tools/gt_convertseq.o obj/src/tools/gt_csa.o obj/src/tools/gt_dev.o obj/src/tools/gt_dot.o obj/src/tools/gt_dupfeat.o obj/src/tools/gt_encseq.o obj/src/tools/gt_encseq2spm.o obj/src/tools/gt_encseq_bench.o obj/src/tools/gt_encseq_bitextract.o obj/src/tools/gt_encseq_check.o obj/src/tools/gt_encseq_decode.o obj/src/tools/gt_encseq_encode.o obj/src/tools/gt_encseq_info.o obj/src/tools/gt_encseq_md5.o obj/src/tools/gt_encseq_sample.o obj/src/tools/gt_eval.o obj/src/tools/gt_extractfeat.o obj/src/tools/gt_extractseq.o obj/src/tools/gt_extracttarget.o obj/src/tools/gt_fastq_sample.o obj/src/tools/gt_featureindex.o obj/src/tools/gt_fingerprint.o obj/src/tools/gt_gdiffcalc.o obj/src/tools/gt_genomediff.o obj/src/tools/gt_gff3.o obj/src/tools/gt_gff3_to_gtf.o obj/src/tools/gt_gff3validator.o obj/src/tools/gt_gtf_to_gff3.o obj/src/tools/gt_guessprot.o obj/src/tools/gt_hop.o obj/src/tools/gt_id_to_md5.o obj/src/tools/gt_idxlocali.o obj/src/tools/gt_inlineseq_add.o obj/src/tools/gt_inlineseq_split.o obj/src/tools/gt_interfeat.o obj/src/tools/gt_kmer_database.o obj/src/tools/gt_linspace_align.o obj/src/tools/gt_loccheck.o obj/src/tools/gt_magicmatch.o obj/src/tools/gt_matchtool.o obj/src/tools/gt_matstat.o obj/src/tools/gt_md5_to_id.o obj/src/tools/gt_merge.o obj/src/tools/gt_mergeesa.o obj/src/tools/gt_mergefeat.o obj/src/tools/gt_mgth.o obj/src/tools/gt_mkfeatureindex.o obj/src/tools/gt_mkfmindex.o obj/src/tools/gt_mmapandread.o obj/src/tools/gt_orffinder.o obj/src/tools/gt_packedindex.o obj/src/tools/gt_packedindex_chk_integrity.o obj/src/tools/gt_packedindex_chk_search.o obj/src/tools/gt_packedindex_mkctxmap.o obj/src/tools/gt_packedindex_trsuftab.o obj/src/tools/gt_paircmp.o obj/src/tools/gt_parsexrf.o obj/src/tools/gt_patternmatch.o obj/src/tools/gt_prebwt.o obj/src/tools/gt_readjoiner.o obj/src/tools/gt_readjoiner_asqg.o obj/src/tools/gt_readjoiner_assembly.o obj/src/tools/gt_readjoiner_cgraph.o obj/src/tools/gt_readjoiner_cnttest.o obj/src/tools/gt_readjoiner_correct.o obj/src/tools/gt_readjoiner_gfa.o obj/src/tools/gt_readjoiner_graph.o obj/src/tools/gt_readjoiner_overlap.o obj/src/tools/gt_readjoiner_prefilter.o obj/src/tools/gt_readjoiner_spmtest.o obj/src/tools/gt_readreads.o obj/src/tools/gt_regioncov.o obj/src/tools/gt_repfind.o obj/src/tools/gt_sain.o obj/src/tools/gt_sam_interface.o obj/src/tools/gt_script_filter.o obj/src/tools/gt_seed_extend.o obj/src/tools/gt_select.o obj/src/tools/gt_seq.o obj/src/tools/gt_seqcorrect.o obj/src/tools/gt_seqfilter.o obj/src/tools/gt_seqids.o obj/src/tools/gt_seqlensort.o obj/src/tools/gt_seqmutate.o obj/src/tools/gt_seqorder.o obj/src/tools/gt_seqstat.o obj/src/tools/gt_seqtransform.o obj/src/tools/gt_seqtranslate.o obj/src/tools/gt_sequniq.o obj/src/tools/gt_sfxmap.o obj/src/tools/gt_show_seedext.o obj/src/tools/gt_shredder.o obj/src/tools/gt_shulen.o obj/src/tools/gt_simreads.o obj/src/tools/gt_skproto.o obj/src/tools/gt_snpper.o obj/src/tools/gt_sortbench.o obj/src/tools/gt_speck.o obj/src/tools/gt_splicesiteinfo.o obj/src/tools/gt_splitfasta.o obj/src/tools/gt_stat.o obj/src/tools/gt_suffixerator.o obj/src/tools/gt_tagerator.o obj/src/tools/gt_tallymer.o obj/src/tools/gt_template.o obj/src/tools/gt_tir.o obj/src/tools/gt_trieins.o obj/src/tools/gt_uniq.o obj/src/tools/gt_wtree.o obj/src/tools/gt_wtree_bench.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/gt +test -d bin || mkdir -p bin cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/custom_stream.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/custom_stream +cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/gt.o obj/src/gtr.o obj/src/gtt.o obj/src/interactive.o obj/src/tools/gt_bed_to_gff3.o obj/src/tools/gt_cds.o obj/src/tools/gt_chain2dim.o obj/src/tools/gt_chseqids.o obj/src/tools/gt_clean.o obj/src/tools/gt_compreads.o obj/src/tools/gt_compreads_compress.o obj/src/tools/gt_compreads_decompress.o obj/src/tools/gt_compreads_refcompress.o obj/src/tools/gt_compreads_refdecompress.o obj/src/tools/gt_compressedbits.o obj/src/tools/gt_condenseq.o obj/src/tools/gt_condenseq_blast.o obj/src/tools/gt_condenseq_compress.o obj/src/tools/gt_condenseq_extract.o obj/src/tools/gt_condenseq_hmmsearch.o obj/src/tools/gt_condenseq_info.o obj/src/tools/gt_condenseq_search.o obj/src/tools/gt_congruence.o obj/src/tools/gt_consensus_sa.o obj/src/tools/gt_convertseq.o obj/src/tools/gt_csa.o obj/src/tools/gt_dev.o obj/src/tools/gt_dot.o obj/src/tools/gt_dupfeat.o obj/src/tools/gt_encseq.o obj/src/tools/gt_encseq2spm.o obj/src/tools/gt_encseq_bench.o obj/src/tools/gt_encseq_bitextract.o obj/src/tools/gt_encseq_check.o obj/src/tools/gt_encseq_decode.o obj/src/tools/gt_encseq_encode.o obj/src/tools/gt_encseq_info.o obj/src/tools/gt_encseq_md5.o obj/src/tools/gt_encseq_sample.o obj/src/tools/gt_eval.o obj/src/tools/gt_extractfeat.o obj/src/tools/gt_extractseq.o obj/src/tools/gt_extracttarget.o obj/src/tools/gt_fastq_sample.o obj/src/tools/gt_featureindex.o obj/src/tools/gt_fingerprint.o obj/src/tools/gt_gdiffcalc.o obj/src/tools/gt_genomediff.o obj/src/tools/gt_gff3.o obj/src/tools/gt_gff3_to_gtf.o obj/src/tools/gt_gff3validator.o obj/src/tools/gt_gtf_to_gff3.o obj/src/tools/gt_guessprot.o obj/src/tools/gt_hop.o obj/src/tools/gt_id_to_md5.o obj/src/tools/gt_idxlocali.o obj/src/tools/gt_inlineseq_add.o obj/src/tools/gt_inlineseq_split.o obj/src/tools/gt_interfeat.o obj/src/tools/gt_kmer_database.o obj/src/tools/gt_linspace_align.o obj/src/tools/gt_loccheck.o obj/src/tools/gt_magicmatch.o obj/src/tools/gt_matchtool.o obj/src/tools/gt_matstat.o obj/src/tools/gt_md5_to_id.o obj/src/tools/gt_merge.o obj/src/tools/gt_mergeesa.o obj/src/tools/gt_mergefeat.o obj/src/tools/gt_mgth.o obj/src/tools/gt_mkfeatureindex.o obj/src/tools/gt_mkfmindex.o obj/src/tools/gt_mmapandread.o obj/src/tools/gt_orffinder.o obj/src/tools/gt_packedindex.o obj/src/tools/gt_packedindex_chk_integrity.o obj/src/tools/gt_packedindex_chk_search.o obj/src/tools/gt_packedindex_mkctxmap.o obj/src/tools/gt_packedindex_trsuftab.o obj/src/tools/gt_paircmp.o obj/src/tools/gt_parsexrf.o obj/src/tools/gt_patternmatch.o obj/src/tools/gt_prebwt.o obj/src/tools/gt_readjoiner.o obj/src/tools/gt_readjoiner_asqg.o obj/src/tools/gt_readjoiner_assembly.o obj/src/tools/gt_readjoiner_cgraph.o obj/src/tools/gt_readjoiner_cnttest.o obj/src/tools/gt_readjoiner_correct.o obj/src/tools/gt_readjoiner_gfa.o obj/src/tools/gt_readjoiner_graph.o obj/src/tools/gt_readjoiner_overlap.o obj/src/tools/gt_readjoiner_prefilter.o obj/src/tools/gt_readjoiner_spmtest.o obj/src/tools/gt_readreads.o obj/src/tools/gt_regioncov.o obj/src/tools/gt_repfind.o obj/src/tools/gt_sain.o obj/src/tools/gt_sam_interface.o obj/src/tools/gt_script_filter.o obj/src/tools/gt_seed_extend.o obj/src/tools/gt_select.o obj/src/tools/gt_seq.o obj/src/tools/gt_seqcorrect.o obj/src/tools/gt_seqfilter.o obj/src/tools/gt_seqids.o obj/src/tools/gt_seqlensort.o obj/src/tools/gt_seqmutate.o obj/src/tools/gt_seqorder.o obj/src/tools/gt_seqstat.o obj/src/tools/gt_seqtransform.o obj/src/tools/gt_seqtranslate.o obj/src/tools/gt_sequniq.o obj/src/tools/gt_sfxmap.o obj/src/tools/gt_show_seedext.o obj/src/tools/gt_shredder.o obj/src/tools/gt_shulen.o obj/src/tools/gt_simreads.o obj/src/tools/gt_skproto.o obj/src/tools/gt_snpper.o obj/src/tools/gt_sortbench.o obj/src/tools/gt_speck.o obj/src/tools/gt_splicesiteinfo.o obj/src/tools/gt_splitfasta.o obj/src/tools/gt_stat.o obj/src/tools/gt_suffixerator.o obj/src/tools/gt_tagerator.o obj/src/tools/gt_tallymer.o obj/src/tools/gt_template.o obj/src/tools/gt_tir.o obj/src/tools/gt_trieins.o obj/src/tools/gt_uniq.o obj/src/tools/gt_wtree.o obj/src/tools/gt_wtree_bench.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/gt test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3sort.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/gff3sort test -d bin/examples || mkdir -p bin/examples @@ -7405,14 +7448,18 @@ make -C ./doc/manuals make[3]: Entering directory '/build/genometools-1.6.2+ds/doc/manuals' test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux -test -e hop-pdf.aux && mv hop-pdf.aux hop.aux make[3]: [Makefile:39: readjoiner-pdf.aux] Error 1 (ignored) pdflatex readjoiner.tex && rm readjoiner.pdf -make[3]: [Makefile:40: hop-pdf.aux] Error 1 (ignored) +test -e hop-pdf.aux && mv hop-pdf.aux hop.aux +make[3]: [Makefile:39: hop-pdf.aux] Error 1 (ignored) pdflatex hop.tex && rm hop.pdf test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux make[3]: [Makefile:39: ltrharvest-pdf.aux] Error 1 (ignored) pdflatex ltrharvest.tex && rm ltrharvest.pdf +test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux +make[3]: [Makefile:39: ltrdigest-pdf.aux] Error 1 (ignored) +pdflatex ltrdigest.tex && rm ltrdigest.pdf +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... @@ -7422,109 +7469,137 @@ restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. +This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. entering extended mode -(./hop.tex +(./ltrdigest.tex LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16>entering extended mode +L3 programming layer <2023-01-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2022/07/02 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))entering extended mode (./ltrharvest.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo 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+(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) No file hop.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map) -No file ltrharvest.aux. +No file ltrdigest.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) No file readjoiner.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map}]}] - -LaTeX Warning: Citation `LTRharvesturl' on page 1 undefined on input line 51. - +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1 +Underfull \hbox (badness 10000) in paragraph at lines 47--47 +[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / +[1 +No file ltrharvest.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd [1) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map}] -LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 53. +LaTeX Warning: Citation `MYE:2005' on page 1 undefined on input line 57. -LaTeX Warning: Citation `AKO04' on page 1 undefined on input line 57. +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 60. -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. +Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 +[] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +Overfull \hbox (19.25665pt too wide) in paragraph at lines 80--83 +[]\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru +n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1]}] +Underfull \hbox (badness 4132) in paragraph at lines 185--188 +[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved +[2] LaTeX Warning: Citation `HOP' on page 1 undefined on input line 42. LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. -[1 - -LaTeX Warning: Reference `overviewOpt' on page 1 undefined on input line 106. - - -LaTeX Warning: Reference `Examples' on page 1 undefined on input line 205. - -[1]]} [2]] +[1] Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 []\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq @@ -7532,38 +7607,58 @@ Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 []\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ reads.fastq r_reads.fastq[] -[2 +[2]} (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)}] +Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 +\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ +ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - +outprefix +[3] -LaTeX Warning: Citation `MYE:2005' on page 1 undefined on input line 57. +LaTeX Warning: Citation `MYE:2005' on page 3 undefined on input line 211. +[3] -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 60. +LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 54. -Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 -[] +Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 +\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can +-di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ +[]]. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)] [4 -Overfull \hbox (19.25665pt too wide) in paragraph at lines 80--83 -[]\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru -n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd]) +LaTeX Warning: Citation `MYE:2005' on page 4 undefined on input line 261. -LaTeX Warning: Citation `gff3' on page 3 undefined on input line 249. +[4 -[3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1] [4] -Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 -\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ -ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - -outprefix -[3 -Underfull \hbox (badness 4132) in paragraph at lines 185--188 -[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved -[2]] [5 +LaTeX Warning: Citation `gff3' on page 1 undefined on input line 69. + + +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 75. -LaTeX Warning: Citation `MYE:2005' on page 3 undefined on input line 211. -[3]] [4] (./hop.aux) +LaTeX Warning: Citation `hmmer' on page 1 undefined on input line 78. + + +LaTeX Warning: Citation `pfam' on page 1 undefined on input line 80. + + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. + +[1] (./hop.aux)]] + +LaTeX Warning: Citation `LTRharvesturl' on page 1 undefined on input line 51. + + +LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 53. + + +LaTeX Warning: Citation `AKO04' on page 1 undefined on input line 57. + + +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. + +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd LaTeX Warning: There were undefined references. @@ -7572,45 +7667,82 @@ ) (see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}] +[2] [6> [3]] [4 [7]] (./readjoiner.aux) -LaTeX Warning: Citation `Edena' on page 5 undefined on input line 328. +LaTeX Warning: There were undefined references. -[5] [6 -Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] -Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 -[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi -nner pred-inner-chr02.fsa[] -[7]] [7] +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. + + ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc}> +Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 +\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 +/ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe +at + +Underfull \hbox (badness 10000) in paragraph at lines 283--291 + +[5> + [6] + +LaTeX Warning: Reference `overviewOpt' on page 1 undefined on input line 106. + + +LaTeX Warning: Reference `Examples' on page 1 undefined on input line 205. + +[1 [7 Output written on hop.pdf (5 pages, 70228 bytes). Transcript written on hop.log. - (./readjoiner.aux) +]] [2]mv hop.aux hop-pdf.aux + [8] + +LaTeX Warning: Citation `gff3' on page 3 undefined on input line 249. + +[3test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux + +Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 +[]\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname + genome.fas + +Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576 +[]\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called + \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/ +n/12 and \OT1/pcr/m/n/12 HMM3.hmm\OT1/ptm/m/n/12 , + +Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 +\OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g +enome.fas +[9]make[3]: [Makefile:39: uniquesub-pdf.aux] Error 1 (ignored) +pdflatex uniquesub.tex && rm uniquesub.pdf +] [10] (./ltrdigest.aux) LaTeX Warning: There were undefined references. @@ -7620,8 +7752,51 @@ ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} [4]mv readjoiner.aux readjoiner-pdf.aux +test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux + +] - Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] @@ -7651,9 +7820,8 @@ Overfull \hbox (14.30313pt too wide) in paragraph at lines 723--723 []\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl tr 100 -maxlenltr 1000 -[9> +[9] LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 770. @@ -7668,18 +7836,18 @@ LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 792. -[10]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - +[10] Underfull \hbox (badness 10000) in paragraph at lines 824--826 []\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 [][] -[11] [12] (./ltrharvest.aux) -Output written on readjoiner.pdf (8 pages, 115881 bytes). -Transcript written on readjoiner.log. - +[11 +Output written on ltrdigest.pdf (11 pages, 198276 bytes). +Transcript written on ltrdigest.log. +] [12]mv ltrdigest.aux ltrdigest-pdf.aux + (./ltrharvest.aux) LaTeX Warning: There were undefined references. @@ -7689,37 +7857,38 @@ ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}mv readjoiner.aux readjoiner-pdf.aux -< +ic/amsfonts/cm/cmmi10.pfb>test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux +< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>make[3]: [Makefile:39: uniquesub-pdf.aux] Error 1 (ignored) -pdflatex uniquesub.tex && rm uniquesub.pdf -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +bfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +>This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. Output written on ltrharvest.pdf (13 pages, 170894 bytes). Transcript written on ltrharvest.log. -mv ltrharvest.aux ltrharvest-pdf.aux -test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux -make[3]: [Makefile:39: matstat-pdf.aux] Error 1 (ignored) -pdflatex matstat.tex && rm matstat.pdf This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. +mv ltrharvest.aux ltrharvest-pdf.aux +test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux +make[3]: [Makefile:39: packedindex-pdf.aux] Error 1 (ignored) +pdflatex packedindex.tex && rm packedindex.pdf faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. 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oxfordjournals . org / cgi / content / -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -No file matstat.aux. +(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +[Loading MPS to PDF converter (version 2006.09.02).] +) +No file uniquesub.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)} -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)] [1{/var/lib/texmf/fo +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map LaTeX Warning: Citation `GRAE:NIE:KUR:HUY:BIR:STU:FLI:2007' on page 1 undefined on input line 64. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map - -LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 54. - - -Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 -\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can --di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ -[]]. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) - -LaTeX Warning: Citation `gff3' on page 1 undefined on input line 69. - - -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 75. - - -LaTeX Warning: Citation `hmmer' on page 1 undefined on input line 78. - - -LaTeX Warning: Citation `pfam' on page 1 undefined on input line 80. - - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. - -[1] - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. - - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. - - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. - - -LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 166. - -[2] [3] [4] -Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 -\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 -/ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe -at - -Underfull \hbox (badness 10000) in paragraph at lines 283--291 - -[5] [6] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd}})]] +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty +Excluding comment 'comment') +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +No file packedindex.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map}]}] Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 \OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2] [3 [7] (./uniquesub.aux) - -LaTeX Warning: There were undefined references. - - -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. - - ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}] ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}>]> -Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 -[]\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname - genome.fas - -Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576 -[]\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called - \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/ -n/12 and \OT1/pcr/m/n/12 HMM3.hmm\OT1/ptm/m/n/12 , - -Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 -\OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g -enome.fas -[9] [10] (./ltrdigest.aux) +[2] [3 (./matstat.aux)] (./uniquesub.aux) LaTeX Warning: There were undefined references. @@ -7907,196 +8026,24 @@ ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux - -test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - -Output written on ltrdigest.pdf (11 pages, 198276 bytes). -Transcript written on ltrdigest.log. -mv ltrdigest.aux ltrdigest-pdf.aux -test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux -make[3]: [Makefile:39: repfind-pdf.aux] Error 1 (ignored) -pdflatex repfind.tex && rm repfind.pdf -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -entering extended mode -(./packedindex.tex -LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))entering extended mode -(./mgth.tex -LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16> -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty -Excluding comment 'comment') -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.styentering extended mode -(./repfind.tex) -LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16> -No file packedindex.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty))) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -No file mgth.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii -[Loading MPS to PDF converter (version 2006.09.02).] -) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty -(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) -No file repfind.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] - -LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l -ine 51. - - -LaTeX Warning: Citation `journals/talg/FerraginaMMN07' on page 1 undefined on i -nput line 53. - - -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. - -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map [1] [2] -Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 -\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- -tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ -12 prefix.suf - -LaTeX Warning: Reference `sec:packedindex:mkindex' on page 3 undefined on input - line 278. - -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [3] - -LaTeX Warning: Reference `sec:packedindex:examples' on page 4 undefined on inpu -t line 310. - -[4] - -LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. - - -Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 -[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n -/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ -m/n/12 has been copied/linked -[5] -No file packedindex.bbl. -[6] (./packedindex.aux) - -LaTeX Warning: There were undefined references. - - -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. - - ) +ic/amsfonts/cm/cmmi12.pfb ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< -/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb>] +ic/amsfonts/cm/cmmi12.pfb>>>>>>}] LaTeX Warning: Citation `krause' on page 1 undefined on input line 51. @@ -8105,9 +8052,9 @@ LaTeX Warning: Citation `genometools' on page 1 undefined on input line 58. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -Output written on packedindex.pdf (7 pages, 168804 bytes). -Transcript written on packedindex.log. -} +Output written on matstat.pdf (2 pages, 99983 bytes). +Transcript written on matstat.log. + LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. @@ -8116,11 +8063,12 @@ \OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it /12 Genome- -[1]mv packedindex.aux packedindex-pdf.aux -head -n 6999 ../../testdata/at1MB > read1.fna -] [2echo ">" > read2.fna -] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)tail -n 6945 ../../testdata/at1MB >> read2.fna +[1 +Output written on uniquesub.pdf (3 pages, 106061 bytes). +Transcript written on uniquesub.log. +mv matstat.aux matstat-pdf.aux +]mv uniquesub.aux uniquesub-pdf.aux +test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 123. @@ -8130,66 +8078,38 @@ []\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA STA -[2] -Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 -[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n -/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f -ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . - -Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 -[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna - -suf -tis -lcp -ssp -pl -[3] -Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 -[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che -r, C., Stoye, J., Giegerich, - -LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 196. - - -LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 196. - - -LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 200. - - -LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 200. - -[4] (./repfind.aux) - -LaTeX Warning: There were undefined references. - - -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. +[2]make[3]: [Makefile:39: repfind-pdf.aux] Error 1 (ignored) +pdflatex repfind.tex && rm repfind.pdf - ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc} Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- LaTeX Warning: Reference `Examples' on page 3 undefined on input line 263. -[3../../bin/gt packedindex mkindex -dna -dir rev -parts 12 -bsize 10 \ - -sprank -locfreq 32 -tis -ssp -indexname pck-human\ - -db ../../testdata/at1MB - (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) [4] +[3head -n 6999 ../../testdata/at1MB > read1.fna +] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd})echo ">" > read2.fna +tail -n 6945 ../../testdata/at1MB >> read2.fna + [4]] Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443 [] -[5] +[5]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + + +LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l +ine 51. + + +LaTeX Warning: Citation `journals/talg/FerraginaMMN07' on page 1 undefined on i +nput line 53. + + +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. + +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -8221,10 +8141,7 @@ Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 []\OT1/ptm/m/n/12 - -[6] -Output written on repfind.pdf (4 pages, 111447 bytes). -Transcript written on repfind.log. - [7] (./mgth.aux) +[6] [1 [7] (./mgth.aux) LaTeX Warning: There were undefined references. @@ -8234,29 +8151,85 @@ ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}] - +) + +LaTeX Warning: Reference `sec:packedindex:examples' on page 4 undefined on inpu +t line 310. + +[4] Output written on mgth.pdf (8 pages, 140603 bytes). Transcript written on mgth.log. mv mgth.aux mgth-pdf.aux + + +LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. + + +Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 +[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n +/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ +m/n/12 has been copied/linked +[5]cp ../../testdata/Q1.gz Q1.gz + +No file packedindex.bbl. +[6] (./packedindex.aux) + +LaTeX Warning: There were undefined references. + + +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. + + ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc}< +/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>< +/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb>faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +Output written on packedindex.pdf (7 pages, 168804 bytes). +Transcript written on packedindex.log. +mv packedindex.aux packedindex-pdf.aux test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... bibtex readjoiner This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. +This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: readjoiner.aux I found no \bibdata command---while reading file readjoiner.aux @@ -8268,28 +8241,100 @@ mv readjoiner.aux readjoiner-pdf.aux test -e hop-pdf.aux && mv hop-pdf.aux hop.aux bibtex hop -This is BibTeX, Version 0.99d (TeX Live 2022/Debian) +entering extended mode +(./repfind.tex +LaTeX2e <2022-11-01> patch level 1 +L3 programming layer <2023-01-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2022/07/02 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +No file repfind.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.mapThis is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: hop.aux I found no \bibdata command---while reading file hop.aux I found no \bibstyle command---while reading file hop.aux (There were 2 error messages) make[3]: [Makefile:33: hop-pdf.bbl] Error 2 (ignored) test -e hop-pdf.bbl || touch hop-pdf.bbl -diff hop-pdf.bbl hop.bbl || mv hop.bbl hop-pdf.bbl && rm -f hop.bbl -mv hop.aux hop-pdf.aux -test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux entering extended mode (./genomediff.tex LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16>bibtex ltrharvest +L3 programming layer <2023-01-16>diff hop-pdf.bbl hop.bbl || mv hop.bbl hop-pdf.bbl && rm -f hop.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/base/article.clsmv hop.aux hop-pdf.aux -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clotest -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux +)bibtex ltrharvest +)}] [2 +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 +[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n +/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f +ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . + +Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 +[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna + -suf -tis -lcp -ssp -pl +[3] (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 +[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che +r, C., Stoye, J., Giegerich, + +LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 196. + + +LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 196. + + +LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 200. + + +LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 200. + +[4] (./repfind.aux) + +LaTeX Warning: There were undefined references. + + +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. + + ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +Output written on repfind.pdf (4 pages, 111447 bytes). +Transcript written on repfind.log. +mv repfind.aux repfind-pdf.aux +test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux +bibtex ltrdigest +) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styThis is BibTeX, Version 0.99d (TeX Live 2022/Debian) @@ -8301,18 +8346,20 @@ test -e ltrharvest-pdf.bbl || touch ltrharvest-pdf.bbl diff ltrharvest-pdf.bbl ltrharvest.bbl || mv ltrharvest.bbl ltrharvest-pdf.bbl && rm -f ltrharvest.bbl mv ltrharvest.aux ltrharvest-pdf.aux +test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux +bibtex uniquesub -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.stytest -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux -bibtex ltrdigest -) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) -(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.styThis is BibTeX, Version 0.99d (TeX Live 2022/Debian) +(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)This is BibTeX, Version 0.99d (TeX Live 2022/Debian) +The top-level auxiliary file: uniquesub.aux +I found no \bibdata command---while reading file uniquesub.aux +I found no \bibstyle command---while reading file uniquesub.aux +(There were 2 error messages) +make[3]: [Makefile:33: uniquesub-pdf.bbl] Error 2 (ignored) +test -e uniquesub-pdf.bbl || touch uniquesub-pdf.bbl +This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: ltrdigest.aux The style file: unsrt.bst I found no \bibdata command---while reading file ltrdigest.aux @@ -8322,64 +8369,34 @@ Warning--I didn't find a database entry for "hmmer" Warning--I didn't find a database entry for "pfam" (There was 1 error message) -make[3]: [Makefile:33: ltrdigest-pdf.bbl] Error 2 (ignored) + +(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.stymake[3]: [Makefile:34: ltrdigest-pdf.bbl] Error 2 (ignored) test -e ltrdigest-pdf.bbl || touch ltrdigest-pdf.bbl -diff ltrdigest-pdf.bbl ltrdigest.bbl || mv ltrdigest.bbl ltrdigest-pdf.bbl && rm -f ltrdigest.bbl -0a1,3 + +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)diff uniquesub-pdf.bbl uniquesub.bbl || mv uniquesub.bbl uniquesub-pdf.bbl && rm -f uniquesub.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.defdiff ltrdigest-pdf.bbl ltrdigest.bbl || mv ltrdigest.bbl ltrdigest-pdf.bbl && rm -f ltrdigest.bbl +) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)mv uniquesub.aux uniquesub-pdf.aux +)test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty0a1,3 > \begin{thebibliography}{} > > \end{thebibliography} +bibtex matstat mv ltrdigest.aux ltrdigest-pdf.aux -test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux -)bibtex uniquesub - -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)This is BibTeX, Version 0.99d (TeX Live 2022/Debian) -The top-level auxiliary file: uniquesub.aux -I found no \bibdata command---while reading file uniquesub.aux -I found no \bibstyle command---while reading file uniquesub.aux -(There were 2 error messages) -make[3]: [Makefile:33: uniquesub-pdf.bbl] Error 2 (ignored) -test -e uniquesub-pdf.bbl || touch uniquesub-pdf.bbl -diff uniquesub-pdf.bbl uniquesub.bbl || mv uniquesub.bbl uniquesub-pdf.bbl && rm -f uniquesub.bbl - +test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux +) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.stybibtex mgth +) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file genomediff.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkiimv uniquesub.aux uniquesub-pdf.aux - +(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] -)test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux -bibtex matstat - [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapThis is BibTeX, Version 0.99d (TeX Live 2022/Debian) -The top-level auxiliary file: matstat.aux -I found no \citation commands---while reading file matstat.aux -I found no \bibdata command---while reading file matstat.aux -I found no \bibstyle command---while reading file matstat.aux -(There were 3 error messages) -make[3]: [Makefile:33: matstat-pdf.bbl] Error 2 (ignored) -test -e matstat-pdf.bbl || touch matstat-pdf.bbl -diff matstat-pdf.bbl matstat.bbl || mv matstat.bbl matstat-pdf.bbl && rm -f matstat.bbl -mv matstat.aux matstat-pdf.aux -test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux -bibtex mgth -}] - -LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90 -. - - -LaTeX Warning: Citation `HAU:PFA:DOM:WIE:2009' on page 1 undefined on input lin -e 90. - - -LaTeX Warning: Citation `HAU:REE:PFA:2011' on page 1 undefined on input line 90 -. - - -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. - -(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd)This is BibTeX, Version 0.99d (TeX Live 2022/Debian) +) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapThis is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: mgth.aux I found no \bibdata command---while reading file mgth.aux I found no \bibstyle command---while reading file mgth.aux @@ -8387,37 +8404,25 @@ make[3]: [Makefile:33: mgth-pdf.bbl] Error 2 (ignored) test -e mgth-pdf.bbl || touch mgth-pdf.bbl diff mgth-pdf.bbl mgth.bbl || mv mgth.bbl mgth-pdf.bbl && rm -f mgth.bbl - [1]mv mgth.aux mgth-pdf.aux +mv mgth.aux mgth-pdf.aux test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux bibtex packedindex -test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux - - -LaTeX Warning: Reference `tab:gdopts' on page 2 undefined on input line 165. - -(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fdbibtex repfind -) [2] - -LaTeX Warning: Reference `code:lua' on page 3 undefined on input line 241. - -[3] [4]This is BibTeX, Version 0.99d (TeX Live 2022/Debian) +This is BibTeX, Version 0.99d (TeX Live 2022/Debian) +The top-level auxiliary file: matstat.aux +I found no \citation commands---while reading file matstat.aux +I found no \bibdata command---while reading file matstat.aux +I found no \bibstyle command---while reading file matstat.aux +(There were 3 error messages) +make[3]: [Makefile:33: matstat-pdf.bbl] Error 2 (ignored) +test -e matstat-pdf.bbl || touch matstat-pdf.bbl +diff matstat-pdf.bbl matstat.bbl || mv matstat.bbl matstat-pdf.bbl && rm -f matstat.bbl +This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: packedindex.aux The style file: unsrt.bst Database file #1: gtmanuals.bib test -e packedindex-pdf.bbl || touch packedindex-pdf.bbl diff packedindex-pdf.bbl packedindex.bbl || mv packedindex.bbl packedindex-pdf.bbl && rm -f packedindex.bbl -This is BibTeX, Version 0.99d (TeX Live 2022/Debian) -The top-level auxiliary file: repfind.aux -I found no \citation commands---while reading file repfind.aux -I found no \bibdata command---while reading file repfind.aux -I found no \bibstyle command---while reading file repfind.aux -(There were 3 error messages) - -Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 -[][][][][][][][][][][][][][][][][][][][][][][][] -No file genomediff.bbl. -[5make[3]: [Makefile:35: repfind-pdf.bbl] Error 2 (ignored) -test -e repfind-pdf.bbl || touch repfind-pdf.bbl +mv matstat.aux matstat-pdf.aux 0a1,21 > \begin{thebibliography}{1} > @@ -8440,15 +8445,45 @@ > \newblock \url{git://genometools.org/gttestdata.git}. > > \end{thebibliography} -] (./genomediff.aux)diff repfind-pdf.bbl repfind.bbl || mv repfind.bbl repfind-pdf.bbl && rm -f repfind.bbl -mv repfind.aux repfind-pdf.aux -./findemptyoutfiles.sh - -kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt1200 +test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux +bibtex repfind mv packedindex.aux packedindex-pdf.aux ./findemptyoutfiles.sh -./execcommand.pl tallymer.tex > tallymer-tmp.tex -./execcommand.pl tagerator.tex > tagerator-tmp.tex +}] + +LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90 +. + + +LaTeX Warning: Citation `HAU:PFA:DOM:WIE:2009' on page 1 undefined on input lin +e 90. + + +LaTeX Warning: Citation `HAU:REE:PFA:2011' on page 1 undefined on input line 90 +. + + +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. + +(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd)./execcommand.pl tallymer.tex > tallymer-tmp.tex + [1] + +LaTeX Warning: Reference `tab:gdopts' on page 2 undefined on input line 165. + +(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd)This is BibTeX, Version 0.99d (TeX Live 2022/Debian) +The top-level auxiliary file: repfind.aux +I found no \citation commands---while reading file repfind.aux +I found no \bibdata command---while reading file repfind.aux +I found no \bibstyle command---while reading file repfind.aux +(There were 3 error messages) +make[3]: [Makefile:32: repfind-pdf.bbl] Error 2 (ignored) +test -e repfind-pdf.bbl || touch repfind-pdf.bbl +diff repfind-pdf.bbl repfind.bbl || mv repfind.bbl repfind-pdf.bbl && rm -f repfind.bbl +mv repfind.aux repfind-pdf.aux +test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux +test -e readjoiner-pdf.bbl && mv readjoiner-pdf.bbl readjoiner.bbl +pdflatex readjoiner.tex +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... # file output/gt-suffixerator--dna--pl--tis--suf--lcp--v--parts-4--db-read1.fna-read2.fna--indexname-reads.out already exists # file output/gt-tallymer-occratio--output-unique-nonunique--minmersize-10--maxmersize-20--esa-reads.out already exists # file output/gt-tallymer-occratio--output-unique-relative--minmersize-10--maxmersize-20--esa-reads.out already exists @@ -8456,72 +8491,102 @@ # file output/gt-tallymer-mkindex--mersize-19--minocc-40--esa-reads.out already exists # file output/gt-tallymer-mkindex--mersize-19--minocc-4--indexname-tyr-reads--counts--pl--esa-reads.out already exists # file output/gt-tallymer-search--output-qseqnum-qpos-counts-sequence--tyr-tyr-reads--q-U89959.fna.out already exists -test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux -test -e readjoiner-pdf.bbl && mv readjoiner-pdf.bbl readjoiner.bbl -pdflatex readjoiner.tex -# file output/gt-tagerator--q-Q1.gz--maxocc-10--pck-pck-human.out already exists -# file output/gt-tagerator--q-Q1.gz--pck-pck-human--e-2.out already exists -# file output/gt-tagerator--q-Q1.gz--pck-pck-human--e-1--maxocc-5.out already exists -test -e hop-pdf.aux && mv hop-pdf.aux hop.aux -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + [2]test -e hop-pdf.aux && mv hop-pdf.aux hop.aux test -e hop-pdf.bbl && mv hop-pdf.bbl hop.bbl -pdflatex hop.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + + +LaTeX Warning: Reference `code:lua' on page 3 undefined on input line 241. + +[3]pdflatex hop.tex + [4]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 +[][][][][][][][][][][][][][][][][][][][][][][][] +No file genomediff.bbl. +[5] (./genomediff.aux) +kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt1200 This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode -(./readjoiner.tex +(./hop.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)entering extended mode +(./readjoiner.tex +LaTeX2e <2022-11-01> patch level 1 +L3 programming layer <2023-01-16>) +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)entering extended mode -(./hop.tex +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty)test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux +test -e ltrharvest-pdf.bbl && mv ltrharvest-pdf.bbl ltrharvest.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)pdflatex ltrharvest.tex + +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) +(./readjoiner.aux) +(./hop.aux)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.mapentering extended mode +(./ltrharvest.tex LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16>) +L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) (./optionman.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(./readjoiner.aux)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./hop.aux) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map}] +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))} +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty]) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)} +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def]) +(./ltrharvest.aux) [1] Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 [] @@ -8529,23 +8594,10 @@ []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1] -Underfull \hbox (badness 4132) in paragraph at lines 185--188 -[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved -[2] [3] [4] [5] [6] [7] (./readjoiner.aux)} ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc} - [1 -Output written on readjoiner.pdf (8 pages, 115205 bytes). -Transcript written on readjoiner.log. -]pdflatex readjoiner.tex - +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 []\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq @@ -8553,77 +8605,151 @@ Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 []\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ reads.fastq r_reads.fastq[] -[2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[2 [1] [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map] +Underfull \hbox (badness 4132) in paragraph at lines 185--188 +[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved +[2 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd]) [3] Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 \OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - outprefix -[3]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - [4] (./hop.aux) ) +[3] [4] [4] (./hop.aux) [5 ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} +/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> [6] [7] (./readjoiner.aux) ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc} + Output written on hop.pdf (5 pages, 69634 bytes). Transcript written on hop.log. pdflatex hop.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + +Output written on readjoiner.pdf (8 pages, 115205 bytes). +Transcript written on readjoiner.log. +pdflatex readjoiner.tex +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +}] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1] [2] [3]This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + [4] +[5]This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -entering extended mode -(./readjoiner.tex + [6] +Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] + +Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 +[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi +nner pred-inner-chr02.fsa[] +[7] +Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] + +Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] + +Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 +[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - +mat 2 -mis -2 -ins -3 +[8] +Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l +LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] + +Overfull \hbox (14.30313pt too wide) in paragraph at lines 723--723 +[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl +tr 100 -maxlenltr 1000 +[9] [10]entering extended mode +(./hop.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> +Underfull \hbox (badness 10000) in paragraph at lines 824--826 +[]\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom +e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . + +Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 +[][] +[11] [12 +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls] (./ltrharvest.aux) ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc +Document Class: article 2022/07/02 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo}))< +/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty>) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defentering extended mode +(./readjoiner.tex +LaTeX2e <2022-11-01> patch level 1 +L3 programming layer <2023-01-16>) +(./hop.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))entering extended mode -(./hop.tex) -LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16> -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) -(./readjoiner.aux) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +Output written on ltrharvest.pdf (13 pages, 170070 bytes). +Transcript written on ltrharvest.log. +) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)pdflatex ltrharvest.tex + +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./hop.aux) +(./readjoiner.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map}] +nts/map/pdftex/updmap/pdftex.mapThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +}]} [1] Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 [] @@ -8631,29 +8757,10 @@ []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)] [1] Underfull \hbox (badness 4132) in paragraph at lines 185--188 []\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved -[2] [3] [4] [5] [6] [7] (./readjoiner.aux) ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc} - -Output written on readjoiner.pdf (8 pages, 115205 bytes). -Transcript written on readjoiner.log. -}]mv readjoiner.aux readjoiner-pdf.aux -test -e readjoiner.bbl && mv readjoiner.bbl readjoiner-pdf.bbl -test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux -test -e ltrharvest-pdf.bbl && mv ltrharvest-pdf.bbl ltrharvest.bbl -pdflatex ltrharvest.tex - [1]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt1200 - +[2] Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 []\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq @@ -8661,7 +8768,7 @@ Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 []\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ reads.fastq r_reads.fastq[] -[2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[2] [3 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd]) [4] Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 \OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - @@ -8670,117 +8777,208 @@ (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} +pfb [5> [6 Output written on hop.pdf (5 pages, 69634 bytes). Transcript written on hop.log. -mv hop.aux hop-pdf.aux +]mv hop.aux hop-pdf.aux test -e hop.bbl && mv hop.bbl hop-pdf.bbl -test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux -test -e ltrdigest-pdf.bbl && mv ltrdigest-pdf.bbl ltrdigest.bbl -pdflatex ltrdigest.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) - -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt1200.mf -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mfThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. + [7] (./readjoiner.auxtest -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux +)test -e ltrdigest-pdf.bbl && mv ltrdigest-pdf.bbl ltrdigest.bbl + ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc} +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf - Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf - Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf - Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf - Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf - Ok [100] [109] [98] [99] [108]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf - Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] -[45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] -[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] -[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] -[150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] -[162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] -[175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf - Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf - Ok [185] [178] [179] [170] [186]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf - Ok [188] [189] [190]) ) ) ) -Font metrics written on tctt1200.tfm. -Output written on tctt1200.600gf (128 characters, 22920 bytes). -Transcript written on tctt1200.log. +Output written on readjoiner.pdf (8 pages, 115205 bytes). +Transcript written on readjoiner.log. +mv readjoiner.aux readjoiner-pdf.aux +test -e readjoiner.bbl && mv readjoiner.bbl readjoiner-pdf.bbl +test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux +test -e uniquesub-pdf.bbl && mv uniquesub-pdf.bbl uniquesub.bbl +pdflatex uniquesub.tex entering extended mode (./ltrharvest.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.clsentering extended mode +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2022/07/02 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(./ltrharvest.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.mapThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +entering extended mode (./ltrdigest.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.stymktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tctt1200.600pk: successfully generated. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt1200 -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styentering extended mode +(./uniquesub.tex +LaTeX2e <2022-11-01> patch level 1 +L3 programming layer <2023-01-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls} +Document Class: article 2022/07/02 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo]) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty [1 +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))]) [2] +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) [3 +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)] +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) [4] +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +[5] +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (./optionman.sty)) [6 +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))] +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) +Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] -LaTeX Warning: There were undefined references. +Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 +[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi +nner pred-inner-chr02.fsa[] +[7 (./optionman.sty)] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] +Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. +Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 +[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - +mat 2 -mis -2 -ins -3 +[8) +(./uniquesub.aux)) +(./ltrdigest.aux])This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) - ) -(see the transcript file for additional information) -kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1200 -) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) -(./ltrharvest.aux) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./ltrdigest.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l +LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] + +Overfull \hbox (14.30313pt too wide) in paragraph at lines 723--723 +[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl +tr 100 -maxlenltr 1000 +[9]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt1200.mf +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf [10]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mf +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf +Underfull \hbox (badness 10000) in paragraph at lines 824--826 +[]\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom +e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . + +Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 +[][] +[11 + Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf] + Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd + Ok) [12 (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf] (./ltrharvest.aux)) ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc}) Underfull \hbox (badness 10000) in paragraph at lines 47--47 []$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]}] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[1< +/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb> [108]) [24] [25] [26] [28] [31] [32] [36] [39] [44] +[45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] +[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] +[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] +[150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] +[162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] +[175] [177] [176] [180] [181] +Output written on ltrharvest.pdf (13 pages, 170070 bytes). +Transcript written on ltrharvest.log. + [182] [183] [184] [187] [191] [214] [246]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf + Ok [48] [49]mv ltrharvest.aux ltrharvest-pdf.aux + [50]test -e ltrharvest.bbl && mv ltrharvest.bbl ltrharvest-pdf.bbl + [51] [52] [53] [54]test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux + [55] [56]test -e matstat-pdf.bbl && mv matstat-pdf.bbl matstat.bbl + [57]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf + Ok [185]pdflatex matstat.tex + [178] [179] [170] [186]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf + Ok [188] [189] [190]) ) ) ) +Font metrics written on tctt1200.tfm. +Output written on tctt1200.600gf (128 characters, 22920 bytes). +Transcript written on tctt1200.log. +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +}] Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 \OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can -di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ @@ -8789,7 +8987,7 @@ LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. -[1] [1] [2] +[1] LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. @@ -8799,7 +8997,7 @@ LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. -[2] [3] [4] [3] +[2] [3] [4] Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 \OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 /ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe @@ -8807,28 +9005,23 @@ Underfull \hbox (badness 10000) in paragraph at lines 283--291 -[5] [4] -[5] [6] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) [6] [7] -Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] - -Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 -[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi -nner pred-inner-chr02.fsa[] -[7] [8] -Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] - -Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] - -Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 -[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - -mat 2 -mis -2 -ins -3 -[8] +[5This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +]}] [6] +Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 +\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu +b / current _ fasta / homo _ sapiens _ 47 _ 36i / +[2 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd)] [3] (./uniquesub.aux) ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc} Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 []\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname genome.fas @@ -8847,15 +9040,7 @@ ic/amsfonts/cm/cmex10.pfb> +i6.pfb> [10 -Underfull \hbox (badness 10000) in paragraph at lines 824--826 -[]\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom -e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . - -Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 -[][] -[11] [12] (./ltrharvest.aux) ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc} -Output written on ltrdigest.pdf (11 pages, 197582 bytes). -Transcript written on ltrdigest.log. -pdflatex ltrdigest.tex -< -/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfbfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -> -Output written on ltrharvest.pdf (13 pages, 170070 bytes). -Transcript written on ltrharvest.log. -pdflatex ltrharvest.tex +b8a.pfb>pdflatex uniquesub.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. entering extended mode -(./ltrdigest.tex +(./matstat.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Output written on ltrdigest.pdf (11 pages, 197582 bytes). +Transcript written on ltrdigest.log. +pdflatex ltrdigest.tex +mktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tctt1200.600pk: successfully generated. + +(/usr/share/texlive/texmf-dist/tex/latex/base/article.clsfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + + +LaTeX Warning: There were undefined references. + + +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. + + ) +(see the transcript file for additional information) Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1200 + (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styentering extended mode -(./ltrharvest.tex +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty)entering extended mode +(./uniquesub.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))entering extended mode +(./ltrdigest.tex +LaTeX2e <2022-11-01> patch level 1 +L3 programming layer <2023-01-16> +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +Document Class: article 2022/07/02 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(./ltrdigest.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) +(./matstat.aux) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg -Underfull \hbox (badness 10000) in paragraph at lines 47--47 -[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./uniquesub.aux)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./ltrharvest.aux) +(./ltrdigest.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map}] +nts/map/pdftex/updmap/pdftex.map +Underfull \hbox (badness 10000) in paragraph at lines 47--47 +[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] +Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 +\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu +b / current _ fasta / homo _ sapiens _ 47 _ 36i / +[2] [3] (./uniquesub.aux) ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc}}] +Output written on uniquesub.pdf (3 pages, 105055 bytes). +Transcript written on uniquesub.log. + +Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 +\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu +b / current _ fasta / homo _ sapiens _ 47 _ 36i / +[2mv uniquesub.aux uniquesub-pdf.aux +] (./matstat.aux) ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc}test -e uniquesub.bbl && mv uniquesub.bbl uniquesub-pdf.bbl +test -e mgth-pdf.bbl && mv mgth-pdf.bbl mgth.bbl +pdflatex mgth.tex + +Output written on matstat.pdf (2 pages, 99983 bytes). +Transcript written on matstat.log. +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +pdflatex matstat.tex +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +}] Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 \OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can -di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ []]. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. -[1] +[1]entering extended mode +(./matstat.tex +LaTeX2e <2022-11-01> patch level 1 +L3 programming layer <2023-01-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2022/07/02 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. @@ -8971,7 +9238,10 @@ LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. -[2] [3] [4] +[2 +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty] [3] [4)] +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 \OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 /ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe @@ -8979,8 +9249,11 @@ Underfull \hbox (badness 10000) in paragraph at lines 283--291 -[5]}] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [6] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) [1] [2] [7] [3] [4] [8] +[5] +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) [6] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def [7)] +(./matstat.aux) [8] Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 []\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname genome.fas @@ -8993,8 +9266,7 @@ Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 \OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g enome.fas -[9 -[5] [10]] (./ltrdigest.aux) ) +[9] [10] (./ltrdigest.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} -Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] - -Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 -[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi -nner pred-inner-chr02.fsa[] -[7] -Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] - -Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] - -Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 -[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - -mat 2 -mis -2 -ins -3 -[8] -Output written on ltrdigest.pdf (11 pages, 197582 bytes). -Transcript written on ltrdigest.log. -mv ltrdigest.aux ltrdigest-pdf.aux -test -e ltrdigest.bbl && mv ltrdigest.bbl ltrdigest-pdf.bbl - -Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l -LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] - -Overfull \hbox (14.30313pt too wide) in paragraph at lines 723--723 -[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl -tr 100 -maxlenltr 1000 -[9test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux -]test -e uniquesub-pdf.bbl && mv uniquesub-pdf.bbl uniquesub.bbl -pdflatex uniquesub.tex - [10]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - -Underfull \hbox (badness 10000) in paragraph at lines 824--826 -[]\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom -e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . - -Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 -[][] -[11] [12] (./ltrharvest.aux) ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}< -/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1200 - -Output written on ltrharvest.pdf (13 pages, 170070 bytes). -Transcript written on ltrharvest.log. -mv ltrharvest.aux ltrharvest-pdf.aux -test -e ltrharvest.bbl && mv ltrharvest.bbl ltrharvest-pdf.bbl -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux -test -e matstat-pdf.bbl && mv matstat-pdf.bbl matstat.bbl -pdflatex matstat.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) - -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1200.mf -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf - Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf - Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf - Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf - Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf - Ok [100] [109] [98] [99] [108]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf - Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] -[45] [46] [42] [47] [60] [61] [62] [77] [79]This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - [87] [110] [91] [93] [94] [95] -[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137]entering extended mode -(./uniquesub.tex -LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16> -[138] [139] [140] [141] [142] [143] -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls [144] [145] [146] [147] -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo [148] [149]) -[150] [151] [152] [153] [154] [155] [156] [157] [158] [159]) [160] [161] -[162] [163] [164] [165] [166] [167] [168] [169] -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty [171] [172] [173] [174] -[175] [177] [176] [180] [181] [182] [183] -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty [184] [187] [191] [214]) [246]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf - Ok [48] [49] [50] [51] [52] [53] [54 -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty] [55] [56] [57]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf - Ok [185] [178] [179] [170] [186]) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf - Ok [188])) [189] [190]) ) ) ) -(some charht values had to be adjusted by as much as 0.06665pt) -Font metrics written on tcrm1200.tfm. -Output written on tcrm1200.600gf (128 characters, 28032 bytes). -Transcript written on tcrm1200.log. -) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styentering extended mode -(./matstat.tex +exmf-dist/fonts/type1/urw/times/utmri8a.pfb>entering extended mode +(./mgth.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) -(./uniquesub.aux) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.stymktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk: successfully generated. - -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg - -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -Output written on genomediff.pdf (6 pages, 174462 bytes). -Transcript written on genomediff.log. +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty [1){/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map (./optionman.sty) +Output written on ltrdigest.pdf (11 pages, 197582 bytes). +Transcript written on ltrdigest.log. -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defmv genomediff.aux genomediff-pdf.aux -)test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux +(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.stymv ltrdigest.aux ltrdigest-pdf.aux +test -e ltrdigest.bbl && mv ltrdigest.bbl ltrdigest-pdf.bbl -(./matstat.aux)test -e mgth-pdf.bbl && mv mgth-pdf.bbl mgth.bbl -pdflatex mgth.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.stytest -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux +test -e packedindex-pdf.bbl && mv packedindex-pdf.bbl packedindex.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)pdflatex packedindex.tex +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./mgth.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)}] -Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 -\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu -b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2] [3 [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map] (./uniquesub.aux) ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc} -Output written on uniquesub.pdf (3 pages, 105055 bytes). -Transcript written on uniquesub.log. -pdflatex uniquesub.tex -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) +(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii +[Loading MPS to PDF converter (version 2006.09.02).] +) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty +(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -}]entering extended mode -(./mgth.tex -LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) +}] Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 \OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2]) (./matstat.aux) ) +[2] (./matstat.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) Output written on matstat.pdf (2 pages, 99983 bytes). Transcript written on matstat.log. -pdflatex matstat.tex - -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.styentering extended mode -(./uniquesub.tex -LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16>) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)) (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.defThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -))) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def)) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) -(./mgth.aux)entering extended mode -(./matstat.tex +mv matstat.aux matstat-pdf.aux +test -e matstat.bbl && mv matstat.bbl matstat-pdf.bbl +test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux +test -e repfind-pdf.bbl && mv repfind-pdf.bbl repfind.bbl +pdflatex repfind.tex +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +entering extended mode +(./packedindex.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty)) -[Loading MPS to PDF converter (version 2006.09.02).] -) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(./uniquesub.aux) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./matstat.aux)}] +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108 \OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it /12 Genome- -[1 -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)] +[1] +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125 []\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA STA -[2] [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map +[2] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- -[3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) [4]}] +[3]This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd)) [4] +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -9344,12 +9393,8 @@ Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443 [] [5] -Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 -\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu -b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2] [3] (./uniquesub.aux) ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -9381,175 +9426,105 @@ Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 []\OT1/ptm/m/n/12 - -[6] [7] (./mgth.aux ) +[6)] [7] (./mgth.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}> - -Output written on uniquesub.pdf (3 pages, 105055 bytes). -Transcript written on uniquesub.log. -mv uniquesub.aux uniquesub-pdf.aux -}test -e uniquesub.bbl && mv uniquesub.bbl uniquesub-pdf.bbl -]test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux - +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty Output written on mgth.pdf (8 pages, 139936 bytes). Transcript written on mgth.log. -test -e packedindex-pdf.bbl && mv packedindex-pdf.bbl packedindex.bbl - -Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 -\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu -b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2] (./matstat.aux)pdflatex mgth.tex - ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +pdflatex mgth.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -Output written on matstat.pdf (2 pages, 99983 bytes). -Transcript written on matstat.log. -mv matstat.aux matstat-pdf.aux -test -e matstat.bbl && mv matstat.bbl matstat-pdf.bbl -test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux -test -e repfind-pdf.bbl && mv repfind-pdf.bbl repfind.bbl -pdflatex repfind.tex -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.styThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -entering extended mode -(./packedindex.tex +) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty +Excluding comment 'comment') (./optionman.sty)entering extended mode +(./repfind.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)entering extended mode +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +(./packedindex.aux +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.styentering extended mode (./mgth.tex LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16>)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - +L3 programming layer <2023-01-16> +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) 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+(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (./optionman.sty)mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1200 + +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) +(./repfind.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty -Excluding comment 'comment')entering extended mode -(./repfind.tex -LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16>) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./packedindex.aux) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./repfind.aux) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) -(./mgth.aux) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map +(./mgth.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] - -LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l -ine 51. - - -LaTeX Warning: Citation `journals/talg/FerraginaMMN07' on page 1 undefined on i -nput line 53. - - -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. - -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1]} [2]] [2 -Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 -\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- -tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ -12 prefix.suf -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [3] +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) + [2] +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1200.mf +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 []\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n /12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f @@ -9558,79 +9533,54 @@ Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 []\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna -suf -tis -lcp -ssp -pl -[3] +[3) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf] Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 []\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che r, C., Stoye, J., Giegerich, -[4] [4 (./repfind.aux) ) +[4] (./repfind.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}] (./packedindex.aux) - -LaTeX Warning: There were undefined references. - - -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. - - ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}< -/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>]< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb +live/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf + Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf + Ok [0] [1] [2] [3] [4] Output written on repfind.pdf (4 pages, 110781 bytes). Transcript written on repfind.log. + [5] [6] [7] [8]pdflatex repfind.tex + [9] [10] [11] [12] [27] [29])} +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf + Ok [100]] [109] [98]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)>faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [99] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [108]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf + Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] +[45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91 Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108 \OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it /12 Genome- -[1 -Output written on packedindex.pdf (7 pages, 170736 bytes). -Transcript written on packedindex.log. -]pdflatex packedindex.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - +[1] [93] [94] [95] +[96] [126] [127] [128]] [129] [130] [131] [132] [133] [134] [135] [136] [137] Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125 []\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA STA [2] +[138] [139] Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- -[3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - [4] +[3] [140] [141] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) [4] [142] Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -9669,27 +9619,91 @@ Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 []\OT1/ptm/m/n/12 - -[6] [7] (./mgth.aux)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - ) +[6 [143]] [7] (./mgth.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} [144] [145] [146] +2.pfb>] [147] [148] + +LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l +ine 51. + + +LaTeX Warning: Citation `journals/talg/FerraginaMMN07' on page 1 undefined on i +nput line 53. + + +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. + +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd [152] [153]) [154] +mes/utmr8a.pfb [155] [156]> [160] [161] +[162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [1 [173] [174] +[175] [177] [176] [180]] [181] [182] [183] [184] [187] [191] [214] [246]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf + Ok [48] [49] [50] [2 [51] [52]] [53] [54] [55] [56] [57]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf + Ok [185] [178] [179] [170] [186]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf +Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 +\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- +tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ +12 prefix.suf +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd + Ok [188] [189] Output written on mgth.pdf (8 pages, 139936 bytes). Transcript written on mgth.log. -mv mgth.aux mgth-pdf.aux +)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + [190]) ) ) ) +(some charht values had to be adjusted by as much as 0.06665pt) +Font metrics written on tcrm1200.tfm. +Output written on tcrm1200.600gf (128 characters, 28032 bytes). +Transcript written on tcrm1200.log. + [3]mv mgth.aux mgth-pdf.aux test -e mgth.bbl && mv mgth.bbl mgth-pdf.bbl pdflatex tallymer-tmp -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + [4] + +LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. + + +Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 +[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n +/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ +m/n/12 has been copied/linked +[5faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +] (./packedindex.bbl) [6] (./packedindex.aux) + +LaTeX Warning: There were undefined references. + + +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. + + ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc}< +/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>< +/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb>This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. entering extended mode (./repfind.tex LaTeX2e <2022-11-01> patch level 1 @@ -9700,62 +9714,59 @@ (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))entering extended mode -(./packedindex.tex -LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16>) -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty -Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty))This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +Output written on packedindex.pdf (7 pages, 170736 bytes). +Transcript written on packedindex.log. +) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)pdflatex packedindex.tex (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./repfind.aux) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty -Excluding comment 'comment') (./optionman.sty)entering extended mode +nts/map/pdftex/updmap/pdftex.mapmktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk: successfully generated. + + patch level 1 -L3 programming layer <2023-01-16> -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +L3 programming layer <2023-01-16>> Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./packedindex.aux)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1}{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map)] [2 -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)] +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)} +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty]) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [2 +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty]) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 []\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n /12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f @@ -9765,43 +9776,29 @@ []\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna -suf -tis -lcp -ssp -pl [3] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 []\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che r, C., Stoye, J., Giegerich, -[4 -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty] (./repfind.aux)) ) +[4]) (./repfind.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} -Output written on repfind.pdf (4 pages, 110781 bytes). -Transcript written on repfind.log. -mv repfind.aux repfind-pdf.aux -test -e repfind.bbl && mv repfind.bbl repfind-pdf.bbl -pdflatex tagerator-tmp +Output written on genomediff.pdf (6 pages, 174462 bytes). +Transcript written on genomediff.log. +>mv genomediff.aux genomediff-pdf.aux +./findemptyoutfiles.sh -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.styfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)}] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -)) [1] [2] -Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 -\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- -tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ -12 prefix.suf -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [3] [4] No file tallymer-tmp.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex @@ -9809,60 +9806,43 @@ LaTeX Warning: Citation `KUR:NER:STE:WAR:2008' on page 1 undefined on input lin e 105. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd -Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 -[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n -/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ -m/n/12 has been copied/linked -[5)] (./packedindex.bbl) [6] (./packedindex.aux) ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}< -/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb> -Output written on packedindex.pdf (7 pages, 170120 bytes). -Transcript written on packedindex.log. +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapbibtex genomediff +./execcommand.pl tagerator.tex > tagerator-tmp.tex entering extended mode -(./tagerator-tmp.tex +(./packedindex.tex LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16>mv packedindex.aux packedindex-pdf.aux -test -e packedindex.bbl && mv packedindex.bbl packedindex-pdf.bbl - -(/usr/share/texlive/texmf-dist/tex/latex/base/article.clstest -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux - +L3 programming layer <2023-01-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)bibtex genomediff -) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))# file output/gt-tagerator--q-Q1.gz--maxocc-10--pck-pck-human.out already exists +# file output/gt-tagerator--q-Q1.gz--pck-pck-human--e-2.out already exists +# file output/gt-tagerator--q-Q1.gz--pck-pck-human--e-1--maxocc-5.out already exists +pdflatex tagerator-tmp + (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)This is BibTeX, Version 0.99d (TeX Live 2022/Debian) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.styfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: genomediff.aux The style file: unsrt.bst Database file #1: gtmanuals.bib - -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.stytest -e genomediff-pdf.bbl || touch genomediff-pdf.bbl +test -e genomediff-pdf.bbl || touch genomediff-pdf.bbl +} +(/usr/share/texlive/texmf-dist/tex/latex/url/url.stydiff genomediff-pdf.bbl genomediff.bbl || mv genomediff.bbl genomediff-pdf.bbl && rm -f genomediff.bbl ) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.stydiff genomediff-pdf.bbl genomediff.bbl || mv genomediff.bbl genomediff-pdf.bbl && rm -f genomediff.bbl -)0a1,25 +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)] +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)0a1,25 > \begin{thebibliography}{1} > > \bibitem{HAU:DOM:WIE:2008} @@ -9888,35 +9868,43 @@ > \newblock \url{http://genometools.org}. > > \end{thebibliography} - (./optionman.sty)}mv genomediff.aux genomediff-pdf.aux -]test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)test -e genomediff-pdf.bbl && mv genomediff-pdf.bbl genomediff.bbl +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fdmv genomediff.aux genomediff-pdf.aux -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defpdflatex genomediff.tex +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.stytest -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux ) Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 []\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads .prj': -[2] -No file tagerator-tmp.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +[2test -e genomediff-pdf.bbl && mv genomediff-pdf.bbl genomediff.bbl +pdflatex genomediff.tex + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty]) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty +Excluding comment 'comment') (./optionman.sty) LaTeX Warning: Reference `Examples' on page 3 undefined on input line 194. -[3 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd]) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map +[3] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./packedindex.aux) Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 []\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads .prj': -[4] [5] [6] [7] [8]This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) +[4]This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. - [9] (./tallymer-tmp.aux) + [5] +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map [6] [7]This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + [8] [9] (./tallymer-tmp.aux) LaTeX Warning: There were undefined references. @@ -9935,109 +9923,139 @@ exmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>} +fb}]> +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd [1] [2] +Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 +\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- +tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ +12 prefix.suf +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) Output written on tallymer-tmp.pdf (9 pages, 149151 bytes). Transcript written on tallymer-tmp.log. -pdflatex tallymer-tmp -] [2faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -] [3] [4]entering extended mode -(./genomediff.tex + [3]pdflatex tallymer-tmp + [4entering extended mode +(./tagerator-tmp.tex LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16> -Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 -[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos -t 5 occurrences in the subject sequences[] -[5] (./tagerator-tmp.aux) ) +L3 programming layer <2023-01-16>] +Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 +[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n +/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ +m/n/12 has been copied/linked +[5faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +] (./packedindex.bbl) +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls [6] (./packedindex.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -Output written on tagerator-tmp.pdf (5 pages, 120617 bytes). -Transcript written on tagerator-tmp.log. -pdflatex tagerator-tmp - -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - -(./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) -(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.styentering extended mode -(./tallymer-tmp.tex +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo>)< +/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>< +/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb> +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)entering extended mode +(./genomediff.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) -(./genomediff.aux) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii -[Loading MPS to PDF converter (version 2006.09.02).] -) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapentering extended mode -(./tagerator-tmp.tex +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.styThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +Output written on packedindex.pdf (7 pages, 170120 bytes). +Transcript written on packedindex.log. + +(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)mv packedindex.aux packedindex-pdf.aux +test -e packedindex.bbl && mv packedindex.bbl packedindex-pdf.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)) (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fdentering extended mode +(./tallymer-tmp.tex LaTeX2e <2022-11-01> patch level 1 -L3 programming layer <2023-01-16> +L3 programming layer <2023-01-16>) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty +No file tagerator-tmp.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty [1){/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) +(./genomediff.aux) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))))) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./tallymer-tmp.aux) +[Loading MPS to PDF converter (version 2006.09.02).] +))) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./tagerator-tmp.aux)}] +(./tallymer-tmp.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] +Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 +[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos +t 5 occurrences in the subject sequences[] +[5] (./tagerator-tmp.aux) ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc}}] LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90 . @@ -10054,13 +10072,12 @@ LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1] [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [2] [3] [4] +Output written on tagerator-tmp.pdf (5 pages, 120617 bytes). +Transcript written on tagerator-tmp.log. +pdflatex tagerator-tmp + [1] +(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + [2] [3] [4] Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 [][][][][][][][][][][][][][][][][][][][][][][][] (./genomediff.bbl) [5] (./genomediff.aux) @@ -10087,45 +10104,26 @@ ublic/amsfonts/cm/cmsy10.pfb> +cmtt10.pfb>}This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) Output written on genomediff.pdf (6 pages, 188510 bytes). Transcript written on genomediff.log. -pdflatex genomediff.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -}] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) + Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 []\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads .prj': -[2]}This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -] [3] [2] +[2pdflatex genomediff.tex +]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + [3] Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 []\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads .prj': -[4] [3] [5] [4] [6] -Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 -[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos -t 5 occurrences in the subject sequences[] -[5] (./tagerator-tmp.aux) ) +[4] [5] [6] [7] [8] [9] (./tallymer-tmp.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} [8] [9] (./tallymer-tmp.aux -Output written on tagerator-tmp.pdf (5 pages, 120617 bytes). -Transcript written on tagerator-tmp.log. -) ) -(see the transcript file for additional information){/usr/share/texlive/texmf-d -ist/fonts/enc/dvips/base/8r.enc}mv tagerator-tmp.pdf tagerator.pdf -entering extended mode +fb> +Output written on tallymer-tmp.pdf (9 pages, 148522 bytes). +Transcript written on tallymer-tmp.log. +mv tallymer-tmp.pdf tallymer.pdf +entering extended mode +(./tagerator-tmp.tex +LaTeX2e <2022-11-01> patch level 1 +L3 programming layer <2023-01-16>This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2022/07/02 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./tagerator-tmp.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)entering extended mode (./genomediff.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -Output written on tallymer-tmp.pdf (9 pages, 148522 bytes). -Transcript written on tallymer-tmp.log. -mv tallymer-tmp.pdf tallymer.pdf -) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty @@ -10158,18 +10182,37 @@ (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./genomediff.aux) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)} +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx) [2)] +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty [3] [4) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty]) +Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 +[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos +t 5 occurrences in the subject sequences[] +[5] (./tagerator-tmp.aux) ) +(see the transcript file for additional information){/usr/share/texlive/texmf-d +ist/fonts/enc/dvips/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(./genomediff.aux) [Loading MPS to PDF converter (version 2006.09.02).] -) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] +) +Output written on tagerator-tmp.pdf (5 pages, 120617 bytes). +Transcript written on tagerator-tmp.log. +mv tagerator-tmp.pdf tagerator.pdf +}] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [1] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [2] [3] [4] Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 @@ -10203,7 +10246,7 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/genometools-1.6.2+ds' bin/gt -test -seed=1201578763 +seed=1074260434 Lua serializer module...ok MD5 seqid module...ok PBS finder module...ok @@ -10294,7 +10337,7 @@ uint64hashtable...ok xdrop...ok cd testsuite; ./testsuite.rb -keywords 'gt_sketch and not gt_python and not gt_ruby' -seed=352136203 +seed=592976889 1379: gt sketch short test : ok 1380: gt sketch short test (stdin) : ok 1381: gt sketch short test (unknown output format) : ok @@ -10326,7 +10369,7 @@ make[1]: Entering directory '/build/genometools-1.6.2+ds' dh_auto_install -- installmanpages useshared=yes \ x32=no 64bit=no errorcheck=no prefix=/build/genometools-1.6.2+ds/debian/tmp/usr - make -j3 install DESTDIR=/build/genometools-1.6.2\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" installmanpages useshared=yes x32=no 64bit=no errorcheck=no prefix=/build/genometools-1.6.2\+ds/debian/tmp/usr + make -j4 install DESTDIR=/build/genometools-1.6.2\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" installmanpages useshared=yes x32=no 64bit=no errorcheck=no prefix=/build/genometools-1.6.2\+ds/debian/tmp/usr make[2]: Entering directory '/build/genometools-1.6.2+ds' [link libgenometools.so] bin/gt -createman /tmp/gtmanpages @@ -10341,12 +10384,12 @@ test -d ./doc/manpages || mkdir -p ./doc/manpages rm -f ./doc/manpages/* scripts/create_manpages /tmp/gtmanpages ./doc/manpages -.test -d /build/genometools-1.6.2+ds/debian/tmp/usr/bin || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/bin +...test -d /build/genometools-1.6.2+ds/debian/tmp/usr/bin || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/bin cp bin/gt /build/genometools-1.6.2+ds/debian/tmp/usr/bin strip /build/genometools-1.6.2+ds/debian/tmp/usr/bin/gt mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/share/genometools cp -a gtdata /build/genometools-1.6.2+ds/debian/tmp/usr/share/genometools/ -.test -d /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/core \ +test -d /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/core \ || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/core cp src/core/*_api.h /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/core test -d /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/extended \ @@ -10371,11 +10414,11 @@ -e 's!@CXX@!g++!' -e 's!@CXXFLAGS@!-g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@LDFLAGS@!-L/build/genometools-1.6.2+ds/debian/tmp/usr/lib -Wl,-z,relro -Wl,-z,now -L/usr/local/lib!' \ -e 's!@LIBS@! -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3!' -e "s!@VERSION@!`cat VERSION`!" \ - -e 's!@BUILDSTAMP@!"2023-06-03 13:48:13"!' \ + -e 's!@BUILDSTAMP@!"2023-06-04 16:27:07"!' \ -e 's!@SYSTEM@!Linux!' /build/genometools-1.6.2+ds/debian/tmp/usr/bin/genometools-config chmod 755 /build/genometools-1.6.2+ds/debian/tmp/usr/bin/genometools-config -............................................................................................ +........................................................................................... test ! -d ./doc/manpages || \ ((test -d /build/genometools-1.6.2+ds/debian/tmp/usr/share/man/man1 || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/share/man/man1) \ && cp ./doc/manpages/* /build/genometools-1.6.2+ds/debian/tmp/usr/share/man/man1) @@ -10443,13 +10486,13 @@ dpkg-gencontrol: warning: Depends field of package libgenometools0-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb -dpkg-deb: building package 'libgenometools0-dbgsym' in '../libgenometools0-dbgsym_1.6.2+ds-3_armhf.deb'. +dpkg-deb: building package 'libgenometools0' in '../libgenometools0_1.6.2+ds-3_armhf.deb'. dpkg-deb: building package 'genometools' in '../genometools_1.6.2+ds-3_armhf.deb'. -dpkg-deb: building package 'python3-genometools' in '../python3-genometools_1.6.2+ds-3_all.deb'. -dpkg-deb: building package 'genometools-common' in '../genometools-common_1.6.2+ds-3_all.deb'. dpkg-deb: building package 'libgenometools0-dev' in '../libgenometools0-dev_1.6.2+ds-3_armhf.deb'. -dpkg-deb: building package 'libgenometools0' in '../libgenometools0_1.6.2+ds-3_armhf.deb'. +dpkg-deb: building package 'python3-genometools' in '../python3-genometools_1.6.2+ds-3_all.deb'. dpkg-deb: building package 'genometools-doc' in '../genometools-doc_1.6.2+ds-3_all.deb'. +dpkg-deb: building package 'libgenometools0-dbgsym' in '../libgenometools0-dbgsym_1.6.2+ds-3_armhf.deb'. +dpkg-deb: building package 'genometools-common' in '../genometools-common_1.6.2+ds-3_all.deb'. dpkg-genbuildinfo --build=binary -O../genometools_1.6.2+ds-3_armhf.buildinfo dpkg-genchanges --build=binary -O../genometools_1.6.2+ds-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -10457,12 +10500,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/9668/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/9668/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/19303 and its subdirectories -I: Current time: Sat Jun 3 13:51:36 -12 2023 -I: pbuilder-time-stamp: 1685843496 +I: removing directory /srv/workspace/pbuilder/9668 and its subdirectories +I: Current time: Sun Jun 4 16:32:20 +14 2023 +I: pbuilder-time-stamp: 1685845940