Diff of the two buildlogs: -- --- b1/build.log 2023-05-12 19:00:44.996891778 +0000 +++ b2/build.log 2023-05-12 17:01:04.439403950 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 12 05:02:50 -12 2023 -I: pbuilder-time-stamp: 1683910970 +I: Current time: Sat May 13 06:49:37 +14 2023 +I: pbuilder-time-stamp: 1683910177 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./tnseq-transit_3.2.7.orig.tar.gz] I: copying [./tnseq-transit_3.2.7-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Fri Oct 21 23:37:09 2022 -12 +gpgv: Signature made Sun Oct 23 01:37:09 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -29,135 +29,167 @@ dpkg-source: info: applying fix_problematic_comparison.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1508/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/26396/tmp/hooks/D01_modify_environment starting +debug: Running on jtx1b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 13 06:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/26396/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/26396/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='0b87df38cfd740e2840b68a7c8401cd6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1508' - PS1='# ' - PS2='> ' + INVOCATION_ID=f36ef6aa33854f72b9493b7bbfa8b81d + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=26396 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yULRAcb8/pbuilderrc_QoDa --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yULRAcb8/b1 --logfile b1/build.log tnseq-transit_3.2.7-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yULRAcb8/pbuilderrc_rdPK --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yULRAcb8/b2 --logfile b2/build.log --extrapackages usrmerge tnseq-transit_3.2.7-1.dsc' + SUDO_GID=114 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4a 5.10.0-22-armmp #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 - -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat - -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown - -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp - -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 133220 Sep 20 2022 date - -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd - -rwxr-xr-x 1 root root 68104 Sep 20 2022 df - -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir - -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 67548 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt - -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount - -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln - -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login - -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls - -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk - -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more - -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount - -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint - -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash - -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm - -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty - -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su - -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync - -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch - -rwxr-xr-x 1 root root 67548 Sep 20 2022 true - -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount - -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1508/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat + -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown + -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp + -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 133220 Sep 21 2022 date + -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd + -rwxr-xr-x 1 root root 68104 Sep 21 2022 df + -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir + -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 67548 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt + -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount + -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln + -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login + -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls + -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk + -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more + -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount + -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint + -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash + -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm + -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 May 13 06:49 sh -> /bin/bash + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty + -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su + -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync + -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch + -rwxr-xr-x 1 root root 67548 Sep 21 2022 true + -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount + -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/26396/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -359,7 +391,7 @@ Get: 142 http://deb.debian.org/debian bookworm/main armhf python3-sklearn all 1.2.1+dfsg-1 [2103 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf python3-statsmodels-lib armhf 0.13.5+dfsg-7 [1116 kB] Get: 144 http://deb.debian.org/debian bookworm/main armhf python3-statsmodels all 0.13.5+dfsg-7 [4515 kB] -Fetched 108 MB in 18s (5959 kB/s) +Fetched 108 MB in 9s (11.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) @@ -956,8 +988,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/tnseq-transit-3.2.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tnseq-transit_3.2.7-1_source.changes +I: user script /srv/workspace/pbuilder/26396/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/26396/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/tnseq-transit-3.2.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../tnseq-transit_3.2.7-1_source.changes dpkg-buildpackage: info: source package tnseq-transit dpkg-buildpackage: info: source version 3.2.7-1 dpkg-buildpackage: info: source distribution unstable @@ -967,7 +1010,7 @@ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/tnseq-transit-3.2.7' +make[1]: ingresso nella directory «/build/tnseq-transit-3.2.7» dh_auto_clean I: pybuild base:240: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead @@ -978,7 +1021,7 @@ 'build/scripts-3.11' does not exist -- can't clean it rm -rf tests_invalid_data rm -rf tnseq_transit.egg-info -make[1]: Leaving directory '/build/tnseq-transit-3.2.7' +make[1]: uscita dalla directory «/build/tnseq-transit-3.2.7» dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary @@ -986,7 +1029,7 @@ dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure -make[1]: Entering directory '/build/tnseq-transit-3.2.7' +make[1]: ingresso nella directory «/build/tnseq-transit-3.2.7» mkdir -p tests_invalid_data mv tests/H37Rv.fna tests_invalid_data dh_auto_configure @@ -994,64 +1037,64 @@ /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running config -make[1]: Leaving directory '/build/tnseq-transit-3.2.7' +make[1]: uscita dalla directory «/build/tnseq-transit-3.2.7» dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running build running build_py -creating /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp -copying src/pytpp/tpp_gui.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp -copying src/pytpp/tpp_tools.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp -copying src/pytpp/__init__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp -copying src/pytpp/__main__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp creating /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +copying src/pytransit/tnseq_tools.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit copying src/pytransit/draw_trash.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit -copying src/pytransit/qcDisplay.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit -copying src/pytransit/norm_tools.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit -copying src/pytransit/fileDisplay.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit -copying src/pytransit/transit_gui.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit -copying src/pytransit/transit_tools.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit copying src/pytransit/__init__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +copying src/pytransit/images.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +copying src/pytransit/fileDisplay.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +copying src/pytransit/__main__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +copying src/pytransit/norm_tools.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit copying src/pytransit/stat_tools.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit -copying src/pytransit/view_trash.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit copying src/pytransit/trash.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit -copying src/pytransit/__main__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit -copying src/pytransit/tnseq_tools.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit -copying src/pytransit/images.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +copying src/pytransit/view_trash.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +copying src/pytransit/transit_gui.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +copying src/pytransit/transit_tools.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +copying src/pytransit/qcDisplay.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit +creating /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp +copying src/pytpp/__init__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp +copying src/pytpp/__main__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp +copying src/pytpp/tpp_gui.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp +copying src/pytpp/tpp_tools.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp +creating /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export +copying src/pytransit/export/__init__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export +copying src/pytransit/export/mean_counts.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export +copying src/pytransit/export/prot_table.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export +copying src/pytransit/export/combined_wig.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export +copying src/pytransit/export/igv.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export +copying src/pytransit/export/base.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export creating /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/ttnfitness.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/pathway_enrichment.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/corrplot.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/norm.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/rankproduct.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/gumbel.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/normalize.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis copying src/pytransit/analysis/heatmap.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/norm.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/utest.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis copying src/pytransit/analysis/__init__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/example.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/hmm.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/gi.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis copying src/pytransit/analysis/tnseq_stats.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/anova.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/gumbel.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/example.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/normalize.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/ttnfitness.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/resampling.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/corrplot.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/griffin.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis copying src/pytransit/analysis/tn5gaps.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/utest.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/binomial.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/anova.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis copying src/pytransit/analysis/base.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/resampling.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis copying src/pytransit/analysis/zinb.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/binomial.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/gi.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/hmm.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -copying src/pytransit/analysis/griffin.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis -creating /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export -copying src/pytransit/export/prot_table.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export -copying src/pytransit/export/igv.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export -copying src/pytransit/export/mean_counts.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export -copying src/pytransit/export/__init__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export -copying src/pytransit/export/base.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export -copying src/pytransit/export/combined_wig.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export +copying src/pytransit/analysis/rankproduct.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis +copying src/pytransit/analysis/pathway_enrichment.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis creating /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/convert -copying src/pytransit/convert/gff_to_prot_table.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/convert copying src/pytransit/convert/__init__.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/convert +copying src/pytransit/convert/gff_to_prot_table.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/convert copying src/pytransit/convert/base.py -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/convert running egg_info creating tnseq_transit.egg-info @@ -1162,7 +1205,7 @@ copying src/pytransit/genomes/mc2_155_tamu.fna -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes copying src/pytransit/genomes/mc2_155_tamu.prot_table -> /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes debian/rules override_dh_auto_test -make[1]: Entering directory '/build/tnseq-transit-3.2.7' +make[1]: ingresso nella directory «/build/tnseq-transit-3.2.7» dh_auto_test -- --system=custom --test-args="PYTHONPATH=tests {interpreter} -m unittest -v tests/*.py" I: pybuild base:240: PYTHONPATH=tests python3.11 -m unittest -v tests/*.py test_Binomial (tests.test_analysis_methods.TestMethods.test_Binomial) ... /build/tnseq-transit-3.2.7/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.7/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> @@ -1354,8 +1397,7 @@ for line in open(fname): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -test_resampling (tests.test_analysis_methods.TestMethods.test_resampling) ... Matplotlib is building the font cache; this may take a moment. -/build/tnseq-transit-3.2.7/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.7/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> +test_resampling (tests.test_analysis_methods.TestMethods.test_resampling) ... /build/tnseq-transit-3.2.7/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.7/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'> for line in open(path): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/tnseq-transit-3.2.7/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.7/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'> @@ -1396,7 +1438,7 @@ ResourceWarning: Enable tracemalloc to get the object allocation traceback [anova] Adding File: /build/tnseq-transit-3.2.7/tests/testoutput.txt [anova] Finished Anova analysis -[anova] Time: 9.6s +[anova] Time: 1.2s Removing output file... @@ -1419,8 +1461,8 @@ ok test_resampling_adaptive (tests.test_analysis_methods.TestMethods.test_resampling_adaptive) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction -[resampling] Number of significant conditionally essential genes (Padj<0.05): 36 -[resampling] Time: 572.62s +[resampling] Number of significant conditionally essential genes (Padj<0.05): 35 +[resampling] Time: 37.82s [resampling] Finished resampling Method Removing output file... @@ -1441,8 +1483,8 @@ ResourceWarning: Enable tracemalloc to get the object allocation traceback [resampling] [resampling] Performing Benjamini-Hochberg Correction -[resampling] Number of significant conditionally essential genes (Padj<0.05): 35 -[resampling] Time: 413.07s +[resampling] Number of significant conditionally essential genes (Padj<0.05): 34 +[resampling] Time: 24.86s [resampling] Finished resampling Method Removing output file... @@ -1461,9 +1503,9 @@ test_resampling_histogram (tests.test_analysis_methods.TestMethods.test_resampling_histogram) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 35 -[resampling] Time: 337.62s +[resampling] Time: 20.84s [resampling] Finished resampling Method -38 +36 35 Removing output file... @@ -1481,8 +1523,8 @@ [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_resampling_multistrain (tests.test_analysis_methods.TestMethods.test_resampling_multistrain) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction -[resampling] Number of significant conditionally essential genes (Padj<0.05): 35 -[resampling] Time: 821.25s +[resampling] Number of significant conditionally essential genes (Padj<0.05): 36 +[resampling] Time: 37.32s [resampling] Finished resampling Method Removing histogram files Removing output file... @@ -1504,7 +1546,7 @@ test_utest (tests.test_analysis_methods.TestMethods.test_utest) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 35 -[resampling] Time: 1221.40s +[resampling] Time: 73.01s [resampling] Finished resampling Method Removing histogram files Removing output file... @@ -1553,7 +1595,7 @@ test_resampling_Quantile (tests.test_norm_methods.TestNormMethods.test_resampling_Quantile) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 65.62s +[resampling] Time: 4.48s [resampling] Finished resampling Method Removing output file... @@ -1575,7 +1617,7 @@ test_resampling_TTR (tests.test_norm_methods.TestNormMethods.test_resampling_TTR) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 66.95s +[resampling] Time: 5.25s [resampling] Finished resampling Method Removing output file... @@ -1594,7 +1636,7 @@ test_resampling_TotReads (tests.test_norm_methods.TestNormMethods.test_resampling_TotReads) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 72.95s +[resampling] Time: 4.26s [resampling] Finished resampling Method Removing output file... @@ -1613,7 +1655,7 @@ test_resampling_ZINFNB (tests.test_norm_methods.TestNormMethods.test_resampling_ZINFNB) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 67.00s +[resampling] Time: 4.42s [resampling] Finished resampling Method Removing output file... @@ -1632,7 +1674,7 @@ test_resampling_nonorm (tests.test_norm_methods.TestNormMethods.test_resampling_nonorm) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 153.64s +[resampling] Time: 15.81s [resampling] Finished resampling Method Removing output file... @@ -1686,23 +1728,23 @@ ResourceWarning: Enable tracemalloc to get the object allocation traceback [tn_preprocess] mapping reads using BWA...(this takes a couple of minutes) [tn_preprocess] /usr/bin/bwa index /build/tnseq-transit-3.2.7/tests/data/test-multicontig.fna -b'[bwa_index] Pack FASTA... 0.47 sec' +b'[bwa_index] Pack FASTA... 0.13 sec' b'[bwa_index] Construct BWT for the packed sequence...' -b'[bwa_index] 20.33 seconds elapse.' -b'[bwa_index] Update BWT... 0.41 sec' -b'[bwa_index] Pack forward-only FASTA... 0.31 sec' -b'[bwa_index] Construct SA from BWT and Occ... 12.12 sec' +b'[bwa_index] 5.00 seconds elapse.' +b'[bwa_index] Update BWT... 0.10 sec' +b'[bwa_index] Pack forward-only FASTA... 0.11 sec' +b'[bwa_index] Construct SA from BWT and Occ... 5.10 sec' b'[main] Version: 0.7.17-r1188' b'[main] CMD: /usr/bin/bwa index /build/tnseq-transit-3.2.7/tests/data/test-multicontig.fna' -b'[main] Real time: 67.540 sec; CPU: 33.660 sec' +b'[main] Real time: 10.887 sec; CPU: 10.441 sec' b'' [tn_preprocess] /usr/bin/bwa mem /build/tnseq-transit-3.2.7/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.7/tests/test_tpp_temp.trimmed1 > /build/tnseq-transit-3.2.7/tests/test_tpp_temp.sam b'[M::bwa_idx_load_from_disk] read 0 ALT contigs' b'[M::process] read 2500 sequences (304052 bp)...' -b'[M::mem_process_seqs] Processed 2500 reads in 1.963 CPU sec, 3.982 real sec' +b'[M::mem_process_seqs] Processed 2500 reads in 0.521 CPU sec, 0.522 real sec' b'[main] Version: 0.7.17-r1188' b'[main] CMD: /usr/bin/bwa mem /build/tnseq-transit-3.2.7/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.7/tests/test_tpp_temp.trimmed1' -b'[main] Real time: 4.311 sec; CPU: 2.091 sec' +b'[main] Real time: 0.601 sec; CPU: 0.552 sec' b'' [tn_preprocess] tabulating template counts and statistics for reference genome /build/tnseq-transit-3.2.7/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.7/tests/../src/pytpp/tpp_tools.py:387: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.7/tests/data/test-multicontig.fna' mode='r' encoding='UTF-8'> @@ -1740,10 +1782,10 @@ [tn_preprocess] /usr/bin/bwa mem /build/tnseq-transit-3.2.7/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.7/tests/test_tpp_temp.trimmed1 > /build/tnseq-transit-3.2.7/tests/test_tpp_temp.sam b'[M::bwa_idx_load_from_disk] read 0 ALT contigs' b'[M::process] read 2500 sequences (304052 bp)...' -b'[M::mem_process_seqs] Processed 2500 reads in 1.960 CPU sec, 3.894 real sec' +b'[M::mem_process_seqs] Processed 2500 reads in 0.516 CPU sec, 0.517 real sec' b'[main] Version: 0.7.17-r1188' b'[main] CMD: /usr/bin/bwa mem /build/tnseq-transit-3.2.7/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.7/tests/test_tpp_temp.trimmed1' -b'[main] Real time: 4.079 sec; CPU: 2.088 sec' +b'[main] Real time: 0.588 sec; CPU: 0.541 sec' b'' [tn_preprocess] tabulating template counts and statistics for reference genome /build/tnseq-transit-3.2.7/tests/data/test-multicontig.fna [tn_preprocess] writing /build/tnseq-transit-3.2.7/tests/test_tpp_temp_a.wig @@ -1756,13 +1798,13 @@ test_tpp_protocol_mme1 (tests.test_tpp.TestTPP.test_tpp_protocol_mme1) ... skipped 'requires local data file' ---------------------------------------------------------------------- -Ran 39 tests in 5094.411s +Ran 39 tests in 356.557s OK (skipped=6) [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 58.00s +[resampling] Time: 4.23s [resampling] Finished resampling Method Removing output file... @@ -1826,7 +1868,7 @@ tests.test_tpp.TestTPP.test_tpp_multicontig_auto_replicon_ids #################### # title: Tn-Seq Pre-Processor -# date: 05/12/2023 06:48:36 +# date: 05/13/2023 06:59:23 # command: python python3.11 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py # transposon type: Himar1 # protocol type: Sassetti @@ -1908,7 +1950,7 @@ tests.test_tpp.TestTPP.test_tpp_multicontig_empty_prefix #################### # title: Tn-Seq Pre-Processor -# date: 05/12/2023 06:49:06 +# date: 05/13/2023 06:59:27 # command: python python3.11 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py # transposon type: Himar1 # protocol type: Sassetti @@ -1984,7 +2026,7 @@ Removing tpp test file Removing tpp test file Removing tpp test file -make[1]: Leaving directory '/build/tnseq-transit-3.2.7' +make[1]: uscita dalla directory «/build/tnseq-transit-3.2.7» create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -2069,144 +2111,144 @@ creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11 creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages -creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp/tpp_gui.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp/tpp_tools.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp/__init__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp/__main__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/tnseq_tools.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/draw_trash.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/qcDisplay.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/__init__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/images.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/fileDisplay.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/__main__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/norm_tools.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/stat_tools.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/__init__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/mean_counts.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/prot_table.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/combined_wig.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/igv.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/base.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv_GO_terms.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/smeg_GO_terms.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_rep3.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_glycerol_combined.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv_sanger_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/COG_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/glycerol_H37Rv_rep2.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_rep2.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/smeg_COG_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/COG_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv_COG_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv_sanger_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/smeg_GO_terms.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_rep1.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv_COG_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/samples_metadata_cg_covar.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_rep3.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_glycerol_combined.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/glycerol_H37Rv_merged.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/sanger_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/samples_metadata_cg.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/samples_metadata_cg_interactions.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/GO_term_names.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/README.md -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/samples_metadata_cg_covar.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/GO_associated_Rvs.csv -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/samples_metadata_cg.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/smeg_COG_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/fileDisplay.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit -creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/ttnfitness.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/pathway_enrichment.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/corrplot.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/norm.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/rankproduct.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/gumbel.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/normalize.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/heatmap.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/__init__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/example.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/tnseq_stats.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/anova.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/tn5gaps.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/utest.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/base.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/resampling.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/zinb.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/binomial.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/gi.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/hmm.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/griffin.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/transit_gui.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/transit_tools.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/__init__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit -creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/prot_table.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/igv.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/mean_counts.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/__init__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/base.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/export/combined_wig.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/stat_tools.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/view_trash.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/GO_associated_Rvs.csv -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/README.md -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/sanger_roles.dat -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv_GO_terms.txt -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/data/glycerol_H37Rv_rep2.wig -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/trash.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/view_trash.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvBD_mod3.prot_table -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/mc2_155_tamu.fna -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvMA2.fna -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvBD.prot_table -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37Rv.fna -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvBD.prot_table -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/BCG.prot_table -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvBD.fna -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/mc2_155_tamu.prot_table -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/BCG.fna -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/mc2_155_tamu.fna -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37Rv.prot_table -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvMA2.prot_table -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/genomes.html -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvBD.fna -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/BCG.prot_table -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/__main__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/BCG.fna -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/genomes/H37Rv.prot_table -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes +creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/heatmap.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/norm.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/utest.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/__init__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/hmm.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/gi.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/tnseq_stats.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/gumbel.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/example.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/normalize.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/ttnfitness.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/resampling.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/corrplot.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/griffin.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/tn5gaps.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/binomial.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/anova.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/base.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/zinb.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/rankproduct.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/analysis/pathway_enrichment.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/transit_gui.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/convert/gff_to_prot_table.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/convert/__init__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/convert/gff_to_prot_table.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/convert/base.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/tnseq_tools.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit -copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/images.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/tpp_gui.py to tpp_gui.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/tpp_tools.py to tpp_tools.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/__main__.py to __main__.cpython-311.pyc +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/transit_tools.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytransit/qcDisplay.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit +creating /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp/__init__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp/__main__.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp/tpp_gui.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp +copying /build/tnseq-transit-3.2.7/.pybuild/cpython3_3.11/build/pytpp/tpp_tools.py -> /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/draw_trash.py to draw_trash.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/qcDisplay.py to qcDisplay.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/norm_tools.py to norm_tools.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/images.py to images.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/fileDisplay.py to fileDisplay.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/ttnfitness.py to ttnfitness.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/pathway_enrichment.py to pathway_enrichment.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/corrplot.py to corrplot.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/norm.py to norm.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/rankproduct.py to rankproduct.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/gumbel.py to gumbel.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/normalize.py to normalize.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/__main__.py to __main__.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/norm_tools.py to norm_tools.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/stat_tools.py to stat_tools.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/mean_counts.py to mean_counts.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/prot_table.py to prot_table.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/combined_wig.py to combined_wig.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/igv.py to igv.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/base.py to base.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/trash.py to trash.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/view_trash.py to view_trash.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/heatmap.py to heatmap.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/norm.py to norm.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/utest.py to utest.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/example.py to example.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/hmm.py to hmm.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/gi.py to gi.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/tnseq_stats.py to tnseq_stats.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/anova.py to anova.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/gumbel.py to gumbel.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/example.py to example.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/normalize.py to normalize.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/ttnfitness.py to ttnfitness.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/resampling.py to resampling.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/corrplot.py to corrplot.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/griffin.py to griffin.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/tn5gaps.py to tn5gaps.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/utest.py to utest.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/binomial.py to binomial.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/anova.py to anova.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/base.py to base.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/resampling.py to resampling.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/zinb.py to zinb.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/binomial.py to binomial.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/gi.py to gi.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/hmm.py to hmm.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/griffin.py to griffin.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/rankproduct.py to rankproduct.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/pathway_enrichment.py to pathway_enrichment.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/transit_gui.py to transit_gui.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/transit_tools.py to transit_tools.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/prot_table.py to prot_table.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/igv.py to igv.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/mean_counts.py to mean_counts.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/base.py to base.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/combined_wig.py to combined_wig.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/stat_tools.py to stat_tools.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/view_trash.py to view_trash.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/trash.py to trash.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/__main__.py to __main__.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert/gff_to_prot_table.py to gff_to_prot_table.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert/gff_to_prot_table.py to gff_to_prot_table.cpython-311.pyc byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert/base.py to base.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.cpython-311.pyc -byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/images.py to images.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/transit_tools.py to transit_tools.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/qcDisplay.py to qcDisplay.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/__main__.py to __main__.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/tpp_gui.py to tpp_gui.cpython-311.pyc +byte-compiling /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/tpp_tools.py to tpp_tools.cpython-311.pyc running install_egg_info Copying tnseq_transit.egg-info to /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/lib/python3.11/dist-packages/tnseq_transit-3.2.7.egg-info Skipping SOURCES.txt @@ -2214,10 +2256,10 @@ Installing tpp script to /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/bin Installing transit script to /build/tnseq-transit-3.2.7/debian/tnseq-transit/usr/bin debian/rules override_dh_install -make[1]: Entering directory '/build/tnseq-transit-3.2.7' +make[1]: ingresso nella directory «/build/tnseq-transit-3.2.7» dh_install mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp -make[1]: Leaving directory '/build/tnseq-transit-3.2.7' +make[1]: uscita dalla directory «/build/tnseq-transit-3.2.7» dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild @@ -2237,7 +2279,7 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_3.2.7-1_armhf.deb'. +dpkg-deb: generazione del pacchetto "tnseq-transit" in "../tnseq-transit_3.2.7-1_armhf.deb". dpkg-genbuildinfo --build=binary -O../tnseq-transit_3.2.7-1_armhf.buildinfo dpkg-genchanges --build=binary -O../tnseq-transit_3.2.7-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2245,12 +2287,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/26396/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/26396/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1508 and its subdirectories -I: Current time: Fri May 12 07:00:38 -12 2023 -I: pbuilder-time-stamp: 1683918039 +I: removing directory /srv/workspace/pbuilder/26396 and its subdirectories +I: Current time: Sat May 13 07:01:00 +14 2023 +I: pbuilder-time-stamp: 1683910860