Diff of the two buildlogs:

--
--- b1/build.log	2023-05-05 11:29:47.493181154 +0000
+++ b2/build.log	2023-05-05 11:40:33.780832709 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Thu May  4 23:21:38 -12 2023
-I: pbuilder-time-stamp: 1683285698
+I: Current time: Sat May  6 01:30:20 +14 2023
+I: pbuilder-time-stamp: 1683286220
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
 I: copying local configuration
@@ -16,7 +16,7 @@
 I: copying [./tvc_5.0.3+git20151221.80e144e+dfsg.orig.tar.xz]
 I: copying [./tvc_5.0.3+git20151221.80e144e+dfsg-5.debian.tar.xz]
 I: Extracting source
-gpgv: Signature made Tue Sep  6 03:33:36 2022 -12
+gpgv: Signature made Wed Sep  7 05:33:36 2022 +14
 gpgv:                using RSA key 2D65BC1EB9665A6E97F9730AB3F5945285219E1F
 gpgv:                issuer "mdbilal@disroot.org"
 gpgv: Can't check signature: No public key
@@ -35,135 +35,167 @@
 dpkg-source: info: applying gcc11.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/30698/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/7054/tmp/hooks/D01_modify_environment starting
+debug: Running on ff4a.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 May  6 01:31 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/7054/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/7054/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='armhf'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
-  DISTRIBUTION='bookworm'
-  HOME='/root'
-  HOST_ARCH='armhf'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
+  BASH_VERSION='5.2.15(1)-release'
+  BUILDDIR=/build
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=armhf
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4'
+  DIRSTACK=()
+  DISTRIBUTION=bookworm
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=arm
+  HOST_ARCH=armhf
   IFS=' 	
   '
-  INVOCATION_ID='e3f9aaeb6c1043d882ecdd7b118a95bd'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='30698'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=c68362702833476f861a980deeff2f88
+  LANG=C
+  LANGUAGE=it_CH:it
+  LC_ALL=C
+  MACHTYPE=arm-unknown-linux-gnueabihf
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnueabihf
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=7054
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BDljuEVv/pbuilderrc_qbjO --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BDljuEVv/b1 --logfile b1/build.log tvc_5.0.3+git20151221.80e144e+dfsg-5.dsc'
-  SUDO_GID='113'
-  SUDO_UID='107'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://10.0.0.15:3142/'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BDljuEVv/pbuilderrc_PuSd --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BDljuEVv/b2 --logfile b2/build.log --extrapackages usrmerge tvc_5.0.3+git20151221.80e144e+dfsg-5.dsc'
+  SUDO_GID=113
+  SUDO_UID=107
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://10.0.0.15:3142/
 I: uname -a
-  Linux virt64c 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux
+  Linux i-capture-the-hostname 5.10.0-22-armmp-lpae #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux
 I: ls -l /bin
   total 5072
-  -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash
-  -rwxr-xr-x 3 root root  67144 Sep 18  2022 bunzip2
-  -rwxr-xr-x 3 root root  67144 Sep 18  2022 bzcat
-  lrwxrwxrwx 1 root root      6 Sep 18  2022 bzcmp -> bzdiff
-  -rwxr-xr-x 1 root root   2225 Sep 18  2022 bzdiff
-  lrwxrwxrwx 1 root root      6 Sep 18  2022 bzegrep -> bzgrep
-  -rwxr-xr-x 1 root root   4893 Nov 27  2021 bzexe
-  lrwxrwxrwx 1 root root      6 Sep 18  2022 bzfgrep -> bzgrep
-  -rwxr-xr-x 1 root root   3775 Sep 18  2022 bzgrep
-  -rwxr-xr-x 3 root root  67144 Sep 18  2022 bzip2
-  -rwxr-xr-x 1 root root  67112 Sep 18  2022 bzip2recover
-  lrwxrwxrwx 1 root root      6 Sep 18  2022 bzless -> bzmore
-  -rwxr-xr-x 1 root root   1297 Sep 18  2022 bzmore
-  -rwxr-xr-x 1 root root  67632 Sep 20  2022 cat
-  -rwxr-xr-x 1 root root  67676 Sep 20  2022 chgrp
-  -rwxr-xr-x 1 root root  67644 Sep 20  2022 chmod
-  -rwxr-xr-x 1 root root  67684 Sep 20  2022 chown
-  -rwxr-xr-x 1 root root 133532 Sep 20  2022 cp
-  -rwxr-xr-x 1 root root 132868 Jan  5 01:20 dash
-  -rwxr-xr-x 1 root root 133220 Sep 20  2022 date
-  -rwxr-xr-x 1 root root  67732 Sep 20  2022 dd
-  -rwxr-xr-x 1 root root  68104 Sep 20  2022 df
-  -rwxr-xr-x 1 root root 133632 Sep 20  2022 dir
-  -rwxr-xr-x 1 root root  59128 Mar 22 21:02 dmesg
-  lrwxrwxrwx 1 root root      8 Dec 19 01:33 dnsdomainname -> hostname
-  lrwxrwxrwx 1 root root      8 Dec 19 01:33 domainname -> hostname
-  -rwxr-xr-x 1 root root  67560 Sep 20  2022 echo
-  -rwxr-xr-x 1 root root     41 Jan 24 02:43 egrep
-  -rwxr-xr-x 1 root root  67548 Sep 20  2022 false
-  -rwxr-xr-x 1 root root     41 Jan 24 02:43 fgrep
-  -rwxr-xr-x 1 root root  55748 Mar 22 21:02 findmnt
-  -rwsr-xr-x 1 root root  26208 Mar 22 20:15 fusermount
-  -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep
-  -rwxr-xr-x 2 root root   2346 Apr  9  2022 gunzip
-  -rwxr-xr-x 1 root root   6447 Apr  9  2022 gzexe
-  -rwxr-xr-x 1 root root  64220 Apr  9  2022 gzip
-  -rwxr-xr-x 1 root root  67032 Dec 19 01:33 hostname
-  -rwxr-xr-x 1 root root  67720 Sep 20  2022 ln
-  -rwxr-xr-x 1 root root  35132 Mar 22 21:51 login
-  -rwxr-xr-x 1 root root 133632 Sep 20  2022 ls
-  -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk
-  -rwxr-xr-x 1 root root  67800 Sep 20  2022 mkdir
-  -rwxr-xr-x 1 root root  67764 Sep 20  2022 mknod
-  -rwxr-xr-x 1 root root  67596 Sep 20  2022 mktemp
-  -rwxr-xr-x 1 root root  38504 Mar 22 21:02 more
-  -rwsr-xr-x 1 root root  38496 Mar 22 21:02 mount
-  -rwxr-xr-x 1 root root   9824 Mar 22 21:02 mountpoint
-  -rwxr-xr-x 1 root root 133532 Sep 20  2022 mv
-  lrwxrwxrwx 1 root root      8 Dec 19 01:33 nisdomainname -> hostname
-  lrwxrwxrwx 1 root root     14 Apr  2 18:25 pidof -> /sbin/killall5
-  -rwxr-xr-x 1 root root  67608 Sep 20  2022 pwd
-  lrwxrwxrwx 1 root root      4 Apr 23 09:24 rbash -> bash
-  -rwxr-xr-x 1 root root  67600 Sep 20  2022 readlink
-  -rwxr-xr-x 1 root root  67672 Sep 20  2022 rm
-  -rwxr-xr-x 1 root root  67600 Sep 20  2022 rmdir
-  -rwxr-xr-x 1 root root  67400 Nov  2  2022 run-parts
-  -rwxr-xr-x 1 root root 133372 Jan  5 07:55 sed
-  lrwxrwxrwx 1 root root      4 Jan  5 01:20 sh -> dash
-  -rwxr-xr-x 1 root root  67584 Sep 20  2022 sleep
-  -rwxr-xr-x 1 root root  67644 Sep 20  2022 stty
-  -rwsr-xr-x 1 root root  50800 Mar 22 21:02 su
-  -rwxr-xr-x 1 root root  67584 Sep 20  2022 sync
-  -rwxr-xr-x 1 root root 336764 Apr  6 02:25 tar
-  -rwxr-xr-x 1 root root  67144 Nov  2  2022 tempfile
-  -rwxr-xr-x 1 root root 133224 Sep 20  2022 touch
-  -rwxr-xr-x 1 root root  67548 Sep 20  2022 true
-  -rwxr-xr-x 1 root root   9768 Mar 22 20:15 ulockmgr_server
-  -rwsr-xr-x 1 root root  22108 Mar 22 21:02 umount
-  -rwxr-xr-x 1 root root  67572 Sep 20  2022 uname
-  -rwxr-xr-x 2 root root   2346 Apr  9  2022 uncompress
-  -rwxr-xr-x 1 root root 133632 Sep 20  2022 vdir
-  -rwxr-xr-x 1 root root  42608 Mar 22 21:02 wdctl
-  lrwxrwxrwx 1 root root      8 Dec 19 01:33 ypdomainname -> hostname
-  -rwxr-xr-x 1 root root   1984 Apr  9  2022 zcat
-  -rwxr-xr-x 1 root root   1678 Apr  9  2022 zcmp
-  -rwxr-xr-x 1 root root   6460 Apr  9  2022 zdiff
-  -rwxr-xr-x 1 root root     29 Apr  9  2022 zegrep
-  -rwxr-xr-x 1 root root     29 Apr  9  2022 zfgrep
-  -rwxr-xr-x 1 root root   2081 Apr  9  2022 zforce
-  -rwxr-xr-x 1 root root   8103 Apr  9  2022 zgrep
-  -rwxr-xr-x 1 root root   2206 Apr  9  2022 zless
-  -rwxr-xr-x 1 root root   1842 Apr  9  2022 zmore
-  -rwxr-xr-x 1 root root   4577 Apr  9  2022 znew
-I: user script /srv/workspace/pbuilder/30698/tmp/hooks/D02_print_environment finished
+  -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash
+  -rwxr-xr-x 3 root root  67144 Sep 19  2022 bunzip2
+  -rwxr-xr-x 3 root root  67144 Sep 19  2022 bzcat
+  lrwxrwxrwx 1 root root      6 Sep 19  2022 bzcmp -> bzdiff
+  -rwxr-xr-x 1 root root   2225 Sep 19  2022 bzdiff
+  lrwxrwxrwx 1 root root      6 Sep 19  2022 bzegrep -> bzgrep
+  -rwxr-xr-x 1 root root   4893 Nov 28  2021 bzexe
+  lrwxrwxrwx 1 root root      6 Sep 19  2022 bzfgrep -> bzgrep
+  -rwxr-xr-x 1 root root   3775 Sep 19  2022 bzgrep
+  -rwxr-xr-x 3 root root  67144 Sep 19  2022 bzip2
+  -rwxr-xr-x 1 root root  67112 Sep 19  2022 bzip2recover
+  lrwxrwxrwx 1 root root      6 Sep 19  2022 bzless -> bzmore
+  -rwxr-xr-x 1 root root   1297 Sep 19  2022 bzmore
+  -rwxr-xr-x 1 root root  67632 Sep 21  2022 cat
+  -rwxr-xr-x 1 root root  67676 Sep 21  2022 chgrp
+  -rwxr-xr-x 1 root root  67644 Sep 21  2022 chmod
+  -rwxr-xr-x 1 root root  67684 Sep 21  2022 chown
+  -rwxr-xr-x 1 root root 133532 Sep 21  2022 cp
+  -rwxr-xr-x 1 root root 132868 Jan  6 03:20 dash
+  -rwxr-xr-x 1 root root 133220 Sep 21  2022 date
+  -rwxr-xr-x 1 root root  67732 Sep 21  2022 dd
+  -rwxr-xr-x 1 root root  68104 Sep 21  2022 df
+  -rwxr-xr-x 1 root root 133632 Sep 21  2022 dir
+  -rwxr-xr-x 1 root root  59128 Mar 23 23:02 dmesg
+  lrwxrwxrwx 1 root root      8 Dec 20 03:33 dnsdomainname -> hostname
+  lrwxrwxrwx 1 root root      8 Dec 20 03:33 domainname -> hostname
+  -rwxr-xr-x 1 root root  67560 Sep 21  2022 echo
+  -rwxr-xr-x 1 root root     41 Jan 25 04:43 egrep
+  -rwxr-xr-x 1 root root  67548 Sep 21  2022 false
+  -rwxr-xr-x 1 root root     41 Jan 25 04:43 fgrep
+  -rwxr-xr-x 1 root root  55748 Mar 23 23:02 findmnt
+  -rwsr-xr-x 1 root root  26208 Mar 23 22:15 fusermount
+  -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep
+  -rwxr-xr-x 2 root root   2346 Apr 10  2022 gunzip
+  -rwxr-xr-x 1 root root   6447 Apr 10  2022 gzexe
+  -rwxr-xr-x 1 root root  64220 Apr 10  2022 gzip
+  -rwxr-xr-x 1 root root  67032 Dec 20 03:33 hostname
+  -rwxr-xr-x 1 root root  67720 Sep 21  2022 ln
+  -rwxr-xr-x 1 root root  35132 Mar 23 23:51 login
+  -rwxr-xr-x 1 root root 133632 Sep 21  2022 ls
+  -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk
+  -rwxr-xr-x 1 root root  67800 Sep 21  2022 mkdir
+  -rwxr-xr-x 1 root root  67764 Sep 21  2022 mknod
+  -rwxr-xr-x 1 root root  67596 Sep 21  2022 mktemp
+  -rwxr-xr-x 1 root root  38504 Mar 23 23:02 more
+  -rwsr-xr-x 1 root root  38496 Mar 23 23:02 mount
+  -rwxr-xr-x 1 root root   9824 Mar 23 23:02 mountpoint
+  -rwxr-xr-x 1 root root 133532 Sep 21  2022 mv
+  lrwxrwxrwx 1 root root      8 Dec 20 03:33 nisdomainname -> hostname
+  lrwxrwxrwx 1 root root     14 Apr  3 20:25 pidof -> /sbin/killall5
+  -rwxr-xr-x 1 root root  67608 Sep 21  2022 pwd
+  lrwxrwxrwx 1 root root      4 Apr 24 11:24 rbash -> bash
+  -rwxr-xr-x 1 root root  67600 Sep 21  2022 readlink
+  -rwxr-xr-x 1 root root  67672 Sep 21  2022 rm
+  -rwxr-xr-x 1 root root  67600 Sep 21  2022 rmdir
+  -rwxr-xr-x 1 root root  67400 Nov  3  2022 run-parts
+  -rwxr-xr-x 1 root root 133372 Jan  6 09:55 sed
+  lrwxrwxrwx 1 root root      9 May  6 01:31 sh -> /bin/bash
+  -rwxr-xr-x 1 root root  67584 Sep 21  2022 sleep
+  -rwxr-xr-x 1 root root  67644 Sep 21  2022 stty
+  -rwsr-xr-x 1 root root  50800 Mar 23 23:02 su
+  -rwxr-xr-x 1 root root  67584 Sep 21  2022 sync
+  -rwxr-xr-x 1 root root 336764 Apr  7 04:25 tar
+  -rwxr-xr-x 1 root root  67144 Nov  3  2022 tempfile
+  -rwxr-xr-x 1 root root 133224 Sep 21  2022 touch
+  -rwxr-xr-x 1 root root  67548 Sep 21  2022 true
+  -rwxr-xr-x 1 root root   9768 Mar 23 22:15 ulockmgr_server
+  -rwsr-xr-x 1 root root  22108 Mar 23 23:02 umount
+  -rwxr-xr-x 1 root root  67572 Sep 21  2022 uname
+  -rwxr-xr-x 2 root root   2346 Apr 10  2022 uncompress
+  -rwxr-xr-x 1 root root 133632 Sep 21  2022 vdir
+  -rwxr-xr-x 1 root root  42608 Mar 23 23:02 wdctl
+  lrwxrwxrwx 1 root root      8 Dec 20 03:33 ypdomainname -> hostname
+  -rwxr-xr-x 1 root root   1984 Apr 10  2022 zcat
+  -rwxr-xr-x 1 root root   1678 Apr 10  2022 zcmp
+  -rwxr-xr-x 1 root root   6460 Apr 10  2022 zdiff
+  -rwxr-xr-x 1 root root     29 Apr 10  2022 zegrep
+  -rwxr-xr-x 1 root root     29 Apr 10  2022 zfgrep
+  -rwxr-xr-x 1 root root   2081 Apr 10  2022 zforce
+  -rwxr-xr-x 1 root root   8103 Apr 10  2022 zgrep
+  -rwxr-xr-x 1 root root   2206 Apr 10  2022 zless
+  -rwxr-xr-x 1 root root   1842 Apr 10  2022 zmore
+  -rwxr-xr-x 1 root root   4577 Apr 10  2022 znew
+I: user script /srv/workspace/pbuilder/7054/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -298,7 +330,7 @@
 Get: 85 http://deb.debian.org/debian bookworm/main armhf libjsoncpp-dev armhf 1.9.5-4 [26.4 kB]
 Get: 86 http://deb.debian.org/debian bookworm/main armhf libsmithwaterman0 armhf 0.0+git20160702.2610e25-12+b1 [33.0 kB]
 Get: 87 http://deb.debian.org/debian bookworm/main armhf libsmithwaterman-dev armhf 0.0+git20160702.2610e25-12+b1 [38.2 kB]
-Fetched 50.6 MB in 7s (6817 kB/s)
+Fetched 50.6 MB in 4s (14.0 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libproc2-0:armhf.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19329 files and directories currently installed.)
@@ -665,8 +697,19 @@
 Writing extended state information...
 Building tag database...
  -> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+usrmerge is already the newest version (35).
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 I: Building the package
-I: Running cd /build/tvc-5.0.3+git20151221.80e144e+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../tvc_5.0.3+git20151221.80e144e+dfsg-5_source.changes
+I: user script /srv/workspace/pbuilder/7054/tmp/hooks/A99_set_merged_usr starting
+Re-configuring usrmerge...
+removed '/etc/unsupported-skip-usrmerge-conversion'
+The system has been successfully converted.
+I: user script /srv/workspace/pbuilder/7054/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/tvc-5.0.3+git20151221.80e144e+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../tvc_5.0.3+git20151221.80e144e+dfsg-5_source.changes
 dpkg-buildpackage: info: source package tvc
 dpkg-buildpackage: info: source version 5.0.3+git20151221.80e144e+dfsg-5
 dpkg-buildpackage: info: source distribution unstable
@@ -720,7 +763,7 @@
 
 -- Build files have been written to: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
    dh_auto_build
-	cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1
+	cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
 make[1]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
 /usr/bin/cmake -S/build/tvc-5.0.3+git20151221.80e144e+dfsg -B/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
 /usr/bin/cmake -E cmake_progress_start /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
@@ -736,22 +779,28 @@
 make[3]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
 cd /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/tvc.dir/DependInfo.cmake --color=
 make[3]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
-make[3]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
 make  -f CMakeFiles/tvcassembly.dir/build.make CMakeFiles/tvcassembly.dir/build
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 make  -f CMakeFiles/tvcutils.dir/build.make CMakeFiles/tvcutils.dir/build
+make[3]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
 make  -f CMakeFiles/tvc.dir/build.make CMakeFiles/tvc.dir/build
 make[3]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
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-[  4%] Building CXX object CMakeFiles/tvcassembly.dir/VariantCaller/IndelAssembly/IndelAssembly.cpp.o
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 /usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o -MF CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o.d -o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/tvcutils.cpp
-/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/VariantCaller.cpp
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-[  6%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o
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+/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcassembly.dir/VariantCaller/TargetsManager.cpp.o -MF CMakeFiles/tvcassembly.dir/VariantCaller/TargetsManager.cpp.o.d -o CMakeFiles/tvcassembly.dir/VariantCaller/TargetsManager.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/TargetsManager.cpp
+/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/VariantCaller.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/VariantCaller.cpp
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+[ 10%] Building CXX object CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o
+/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o -MF CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o.d -o CMakeFiles/tvcassembly.dir/Util/OptArgs.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.cpp
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/VariantCaller.cpp: In function 'void TheSilenceOfTheArmadillos(std::ofstream&)':
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/VariantCaller.cpp:36:24: warning: 'void arma::set_stream_err1(std::ostream&)' is deprecated [-Wdeprecated-declarations]
    36 |   arma::set_stream_err1(null_ostream);
@@ -767,16 +816,6 @@
 /usr/include/armadillo_bits/debug.hpp:103:1: note: declared here
   103 | set_stream_err2(std::ostream& user_stream)
       | ^~~~~~~~~~~~~~~
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                  from /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.h:11,
                  from /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.cpp:4:
@@ -790,27 +829,43 @@
 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
   123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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+[ 37%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o
+/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads/ExtendedReadInfo.cpp
 In file included from /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/viterbi.h:64,
                  from /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/unify_vcf.cpp:19:
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/viterbi.hpp: In instantiation of 'void markov_chain<T>::optimal_path() [with T = unsigned int]':
@@ -825,69 +880,6 @@
 /usr/include/c++/12/bits/stl_iterator.h:458:5: note: declared here
   458 |     operator!=(const reverse_iterator<_Iterator>& __x,
       |     ^~~~~~~~
-[ 29%] Building CXX object CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o
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-In file included from /usr/include/c++/12/vector:70,
-                 from /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/unify_vcf.cpp:13:
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {markov_state}; _Tp = markov_state; _Alloc = std::allocator<markov_state>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<markov_state>::iterator' changed in GCC 7.1
-  439 |       vector<_Tp, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~
-/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {markov_state}; _Tp = markov_state; _Alloc = std::allocator<markov_state>]':
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<markov_state*, std::vector<markov_state> >' changed in GCC 7.1
-  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
-      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {markov_state}; _Tp = markov_state; _Alloc = std::allocator<markov_state>]',
-    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = markov_state; _Alloc = std::allocator<markov_state>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
-    inlined from 'void markov_chain<T>::generate_states(T, T) [with T = unsigned int]' at /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/viterbi.hpp:78:21:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<markov_state*, std::vector<markov_state> >' changed in GCC 7.1
-  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
-      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 31%] Building CXX object CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o
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-/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/MetricsManager.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/MetricsManager.cpp
-[ 34%] Building CXX object CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o
-/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o -MF CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/Variant.cpp
-[ 35%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/MiscUtil.cpp.o
-/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/MiscUtil.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/MiscUtil.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/MiscUtil.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/MiscUtil.cpp
-In file included from /usr/include/c++/12/vector:70,
-                 from /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.h:11,
-                 from /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.cpp:4:
-/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
-/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
-  439 |       vector<_Tp, _Alloc>::
-      |       ^~~~~~~~~~~~~~~~~~~
-In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
-    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
-    inlined from 'void OptArgs::StringToDoubleVector(std::vector<double>&, const std::string&, const std::string&, char)' at /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.cpp:474:21:
-/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
-  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
-      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 37%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/ExtendParameters.cpp.o
-/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/ExtendParameters.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/ExtendParameters.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/ExtendParameters.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/ExtendParameters.cpp
-[ 39%] Building CXX object CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o
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-[ 40%] Building CXX object CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o
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-/usr/bin/cc -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o -MF CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c
-/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c: In function 'ti_index_core':
-/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c:336:42: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int32_t' {aka 'int'} changes value from 'last_bin = 4294967295' to '-1' [-Woverflow]
-  336 |         save_bin = save_tid = last_tid = last_bin = 0xffffffffu;
-      |                                          ^~~~~~~~
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-/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c: In function '_bgzf_check_EOF':
-/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:678:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
-  678 |         fread(buf, 1, 28, fp->file);
-      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
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-[ 46%] Building CXX object CMakeFiles/tvcutils.dir/IonVersion.cpp.o
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-[ 48%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/VcfFormat.cpp.o
-/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/VcfFormat.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/VcfFormat.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Bookkeeping/VcfFormat.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/VcfFormat.cpp
 In file included from /usr/include/c++/12/map:60,
                  from /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/InputStructures.h:14,
                  from /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/InputStructures.cpp:7:
@@ -916,26 +908,52 @@
       |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
   639 |                                              std::forward<_Args>(__args)...);
       |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 50%] Linking CXX executable tvcutils
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-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o CMakeFiles/tvcutils.dir/IonVersion.cpp.o -o tvcutils  -lbamtools -lz -ljsoncpp -lsmithwaterman -ldisorder 
-make[3]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
-[ 50%] Built target tvcutils
-[ 51%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Reads/ExtendedReadInfo.cpp.o
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-[ 53%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Splice/ErrorMotifs.cpp.o
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-[ 54%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Splice/LocalContext.cpp.o
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-[ 56%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Splice/ClassifyVariant.cpp.o
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-[ 57%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Splice/SpliceVariantHypotheses.cpp.o
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 /usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Splice/SpliceVariantHypotheses.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Splice/SpliceVariantHypotheses.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Splice/SpliceVariantHypotheses.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice/SpliceVariantHypotheses.cpp
-[ 59%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o
+In file included from /usr/include/c++/12/vector:70,
+                 from /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/unify_vcf.cpp:13:
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {markov_state}; _Tp = markov_state; _Alloc = std::allocator<markov_state>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<markov_state>::iterator' changed in GCC 7.1
+  439 |       vector<_Tp, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~
+/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {markov_state}; _Tp = markov_state; _Alloc = std::allocator<markov_state>]':
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<markov_state*, std::vector<markov_state> >' changed in GCC 7.1
+  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {markov_state}; _Tp = markov_state; _Alloc = std::allocator<markov_state>]',
+    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = markov_state; _Alloc = std::allocator<markov_state>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
+    inlined from 'void markov_chain<T>::generate_states(T, T) [with T = unsigned int]' at /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/viterbi.hpp:78:21:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<markov_state*, std::vector<markov_state> >' changed in GCC 7.1
+  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 45%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o
 /usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/Filter/DecisionTreeData.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter/DecisionTreeData.cpp
-[ 60%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Filter/VariantAssist.cpp.o
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+[ 50%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/Filter/VariantAssist.cpp.o
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-[ 62%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o
+In file included from /usr/include/c++/12/vector:70,
+                 from /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.h:11,
+                 from /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.cpp:4:
+/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
+/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
+  439 |       vector<_Tp, _Alloc>::
+      |       ^~~~~~~~~~~~~~~~~~~
+In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
+    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
+    inlined from 'void OptArgs::StringToDoubleVector(std::vector<double>&, const std::string&, const std::string&, char)' at /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.cpp:474:21:
+/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
+  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
+      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+[ 51%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o
 /usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o -MF CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o.d -o CMakeFiles/tvc.dir/VariantCaller/HypothesisEvaluator.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/HypothesisEvaluator.cpp
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter/VariantAssist.cpp: In function 'double VariantAssist::MannWhitneyU(std::vector<float>&, std::vector<float>&, bool)':
 /build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter/VariantAssist.cpp:191:36: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector<float>::size_type' {aka 'unsigned int'} [-Wformat=]
@@ -959,24 +977,49 @@
       |                                     |              std::vector<double>::size_type {aka unsigned int}
       |                                     long unsigned int
       |                                   %u
-[ 64%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/DiagnosticJSON.cpp.o
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-[ 65%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/BiasGenerator.cpp.o
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-[ 67%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/SigmaGenerator.cpp.o
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-[ 70%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/PosteriorInference.cpp.o
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-[ 71%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/ShortStack.cpp.o
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-[ 73%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/StackEngine.cpp.o
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+[ 67%] Building C object CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o
+/usr/bin/cc -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o -MF CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o.d -o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c
+/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c: In function 'ti_index_core':
+/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c:336:42: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int32_t' {aka 'int'} changes value from 'last_bin = 4294967295' to '-1' [-Woverflow]
+  336 |         save_bin = save_tid = last_tid = last_bin = 0xffffffffu;
+      |                                          ^~~~~~~~
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-[ 75%] Building CXX object CMakeFiles/tvc.dir/VariantCaller/EnsembleEval/CrossHypotheses.cpp.o
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+/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c: In function '_bgzf_check_EOF':
+/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:678:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
+  678 |         fread(buf, 1, 28, fp->file);
+      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
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+/usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvcutils.dir/IonVersion.cpp.o -MF CMakeFiles/tvcutils.dir/IonVersion.cpp.o.d -o CMakeFiles/tvcutils.dir/IonVersion.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/IonVersion.cpp
+[ 76%] Linking CXX executable tvcutils
+/usr/bin/cmake -E cmake_link_script CMakeFiles/tvcutils.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/tvcutils.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/prepare_hotspots.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/validate_bed.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/tvcutils/unify_vcf.cpp.o CMakeFiles/tvcutils.dir/VariantCaller/TargetsManager.cpp.o CMakeFiles/tvcutils.dir/Util/OptArgs.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/Variant.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/split.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/tabix.cpp.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/index.c.o CMakeFiles/tvcutils.dir/external/vcflib/tabixpp/bgzf.c.o CMakeFiles/tvcutils.dir/IonVersion.cpp.o -o tvcutils  -lbamtools -lz -ljsoncpp -lsmithwaterman -ldisorder 
+make[3]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
+[ 76%] Built target tvcutils
 [ 78%] Building CXX object CMakeFiles/tvc.dir/external/vcflib/split.cpp.o
 /usr/bin/c++ -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/external/vcflib/split.cpp.o -MF CMakeFiles/tvc.dir/external/vcflib/split.cpp.o.d -o CMakeFiles/tvc.dir/external/vcflib/split.cpp.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/split.cpp
 [ 79%] Building CXX object CMakeFiles/tvc.dir/external/vcflib/tabixpp/tabix.cpp.o
@@ -1014,14 +1057,14 @@
 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
   439 |       vector<_Tp, _Alloc>::
       |       ^~~~~~~~~~~~~~~~~~~
+[ 95%] Building C object CMakeFiles/tvc.dir/file-io/ion_util.c.o
+/usr/bin/cc -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/file-io/ion_util.c.o -MF CMakeFiles/tvc.dir/file-io/ion_util.c.o.d -o CMakeFiles/tvc.dir/file-io/ion_util.c.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.c
 In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
     inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
     inlined from 'void OptArgs::StringToDoubleVector(std::vector<double>&, const std::string&, const std::string&, char)' at /build/tvc-5.0.3+git20151221.80e144e+dfsg/Util/OptArgs.cpp:474:21:
 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
   123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 95%] Building C object CMakeFiles/tvc.dir/file-io/ion_util.c.o
-/usr/bin/cc -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/file-io/ion_util.c.o -MF CMakeFiles/tvc.dir/file-io/ion_util.c.o.d -o CMakeFiles/tvc.dir/file-io/ion_util.c.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.c
 [ 96%] Building C object CMakeFiles/tvc.dir/file-io/ion_error.c.o
 /usr/bin/cc -DALIGNSTATS_IGNORE -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src -I/usr/include/jsoncpp -I/usr/include/bamtools -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/FlowDistEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/realignment -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration -I/build/tvc-5.0.3+git20151221.80e144e+dfsg/Util -I/build/tvc-5.0.3+git20151221.80e144e+dfsg -g -O2 -ffile-prefix-map=/build/tvc-5.0.3+git20151221.80e144e+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/tvc.dir/file-io/ion_error.c.o -MF CMakeFiles/tvc.dir/file-io/ion_error.c.o.d -o CMakeFiles/tvc.dir/file-io/ion_error.c.o -c /build/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_error.c
 [ 98%] Building CXX object CMakeFiles/tvc.dir/IonVersion.cpp.o
@@ -1035,10 +1078,10 @@
 /usr/bin/cmake -E cmake_progress_start /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
 make[1]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
    dh_auto_test
-	cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3
+	cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4
 make[1]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
 Running tests...
-/usr/bin/ctest --force-new-ctest-process --verbose -j3
+/usr/bin/ctest --force-new-ctest-process --verbose -j4
 UpdateCTestConfiguration  from :/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
 UpdateCTestConfiguration  from :/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
 Test project /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
@@ -1066,6 +1109,29 @@
 3: Test command: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/tvc "--input-bam" "/build/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/test.bam" "--reference" "/build/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/reference.fasta" "--target-file" "/build/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/test_unmerged_detail.bed" "--error-motifs" "/build/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/sse/motifset.txt" "--parameters-file" "/build/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json" "--use-sse-basecaller" "off" "--trim-ampliseq-primers" "on" "--num-threads" "4" "--output-dir" "/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/test2" "--output-vcf" "small_variants.vcf"
 3: Working Directory: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
 3: Test timeout computed to be: 10000000
+test 4
+    Start 4: tvcutils_call
+
+4: Test command: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/tvcutils
+4: Working Directory: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
+4: Test timeout computed to be: 10000000
+4: 
+4: tvcutils 5.0-3 (e975447-9fa85fb) - Miscellaneous tools used by Torrent Variant Caller plugin and workflow.
+4: 
+4: Usage:   tvcutils <command> [options]
+4: 
+4: Commands:
+4:          prepare_hotspots  Convert BED or VCF file into a valid hotspot file
+4:          validate_bed      Validate targets or hotspots file
+4:          unify_vcf         Unify variants and annotations from all sources (tvc,IndelAssembly,hotpots)
+4: 
+1/8 Test #4: tvcutils_call ....................................   Passed    0.02 sec
+test 5
+    Start 5: tvcutils_prepare_hotspots_call
+
+5: Test command: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/tvcutils "prepare_hotspots"
+5: Working Directory: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
+5: Test timeout computed to be: 10000000
 1: tvc 5.0-3 (e975447-9fa85fb) - Torrent Variant Caller
 1: 
 1: Usage: tvc [options]
@@ -1190,6 +1256,28 @@
 1:      --do-minimal-diagnostic            on/off      (devel) provide minimal read information for called variants [off]
 1:      --override-limits                  on/off      (devel) disable limit-check on input parameters [off].
 1: 
+5: 
+5: tvcutils 5.0-3 (e975447-9fa85fb) - Miscellaneous tools used by Torrent Variant Caller plugin and workflow.
+5: 
+5: Usage:   tvcutils prepare_hotspots [options]
+5: 
+5: General options:
+5:   -b,--input-bed                 FILE       input is a hotspots BED file (either -b or -v required)
+5:   -v,--input-vcf                 FILE       input is a hotspots VCF file (either -b or -v required)
+5:   -d,--output-bed                FILE       output left-aligned hotspots in BED format [none]
+5:   -o,--output-vcf                FILE       output is a hotspots VCF file. To be used as input to --hotspot-vcf argument of variant_caller_pipeline.py (recommended) [none]
+5:   -r,--reference                 FILE       FASTA file containing reference genome (required)
+5:   -a,--left-alignment            on/off     perform left-alignment of indels [off]
+5:   -s,--allow-block-substitutions on/off     do not filter out block substitution hotspots [on]
+5:   -u,--unmerged-bed              FILE       input a target bed file to filter out hotspots that contain a junction of 2 amplicons (optional)
+5: 
+2/8 Test #5: tvcutils_prepare_hotspots_call ...................   Passed    0.02 sec
+test 6
+    Start 6: tvcutils_validate_bed_call
+
+6: Test command: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/tvcutils "validate_bed"
+6: Working Directory: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
+6: Test timeout computed to be: 10000000
 2: tvc 5.0-3 (e975447-9fa85fb) - Torrent Variant Caller
 2: 
 2: INFO: No input VCF (Hotspot) file specified via -c,--input-vcf
@@ -1341,30 +1429,6 @@
 2: TargetsManager: Loaded targets file /build/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/test_unmerged_detail.bed
 2: TargetsManager: 1 target(s)
 2: TargetsManager: Trimming of AmpliSeq primers is enabled
-1/8 Test #1: tvc_call .........................................   Passed    0.03 sec
-test 4
-    Start 4: tvcutils_call
-
-4: Test command: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/tvcutils
-4: Working Directory: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
-4: Test timeout computed to be: 10000000
-4: 
-4: tvcutils 5.0-3 (e975447-9fa85fb) - Miscellaneous tools used by Torrent Variant Caller plugin and workflow.
-4: 
-4: Usage:   tvcutils <command> [options]
-4: 
-4: Commands:
-4:          prepare_hotspots  Convert BED or VCF file into a valid hotspot file
-4:          validate_bed      Validate targets or hotspots file
-4:          unify_vcf         Unify variants and annotations from all sources (tvc,IndelAssembly,hotpots)
-4: 
-2/8 Test #4: tvcutils_call ....................................   Passed    0.01 sec
-test 5
-    Start 5: tvcutils_prepare_hotspots_call
-
-5: Test command: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/tvcutils "prepare_hotspots"
-5: Working Directory: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
-5: Test timeout computed to be: 10000000
 3: tvc 5.0-3 (e975447-9fa85fb) - Torrent Variant Caller
 3: 
 3: INFO: No input VCF (Hotspot) file specified via -c,--input-vcf
@@ -1516,34 +1580,6 @@
 3: TargetsManager: Loaded targets file /build/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/test_unmerged_detail.bed
 3: TargetsManager: 1 target(s)
 3: TargetsManager: Trimming of AmpliSeq primers is enabled
-2: SampleManager: Found 1 read group(s) and 1 sample(s).
-2: SampleManager: Primary sample "85" (default) present in 1 read group(s)
-2: TVC found a total of 1 different flow orders of max flow lengths: 500
-3: SampleManager: Found 1 read group(s) and 1 sample(s).
-3: SampleManager: Primary sample "85" (default) present in 1 read group(s)
-3: TVC found a total of 1 different flow orders of max flow lengths: 500
-5: 
-5: tvcutils 5.0-3 (e975447-9fa85fb) - Miscellaneous tools used by Torrent Variant Caller plugin and workflow.
-5: 
-5: Usage:   tvcutils prepare_hotspots [options]
-5: 
-5: General options:
-5:   -b,--input-bed                 FILE       input is a hotspots BED file (either -b or -v required)
-5:   -v,--input-vcf                 FILE       input is a hotspots VCF file (either -b or -v required)
-5:   -d,--output-bed                FILE       output left-aligned hotspots in BED format [none]
-5:   -o,--output-vcf                FILE       output is a hotspots VCF file. To be used as input to --hotspot-vcf argument of variant_caller_pipeline.py (recommended) [none]
-5:   -r,--reference                 FILE       FASTA file containing reference genome (required)
-5:   -a,--left-alignment            on/off     perform left-alignment of indels [off]
-5:   -s,--allow-block-substitutions on/off     do not filter out block substitution hotspots [on]
-5:   -u,--unmerged-bed              FILE       input a target bed file to filter out hotspots that contain a junction of 2 amplicons (optional)
-5: 
-3/8 Test #5: tvcutils_prepare_hotspots_call ...................   Passed    0.01 sec
-test 6
-    Start 6: tvcutils_validate_bed_call
-
-6: Test command: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/tvcutils "validate_bed"
-6: Working Directory: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
-6: Test timeout computed to be: 10000000
 6: 
 6: tvcutils 5.0-3 (e975447-9fa85fb) - Miscellaneous tools used by Torrent Variant Caller plugin and workflow.
 6: 
@@ -1563,13 +1599,19 @@
 6:      --merged-plain-bed          FILE       output a valid plain merged BED [none]
 6:      --effective-bed             FILE       output a valid effective BED [none]
 6: 
-4/8 Test #6: tvcutils_validate_bed_call .......................   Passed    0.01 sec
+3/8 Test #6: tvcutils_validate_bed_call .......................   Passed    0.02 sec
 test 7
     Start 7: tvcutils_unify_vcf_call
 
 7: Test command: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/tvcutils "unify_vcf"
 7: Working Directory: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
 7: Test timeout computed to be: 10000000
+3: SampleManager: Found 1 read group(s) and 1 sample(s).
+3: SampleManager: Primary sample "85" (default) present in 1 read group(s)
+3: TVC found a total of 1 different flow orders of max flow lengths: 500
+2: SampleManager: Found 1 read group(s) and 1 sample(s).
+2: SampleManager: Primary sample "85" (default) present in 1 read group(s)
+2: TVC found a total of 1 different flow orders of max flow lengths: 500
 7: Parameter novel-tvc-vcf is required and empty.
 7: 
 7: tvcutils 5.0-3 (e975447-9fa85fb) - Miscellaneous tools used by Torrent Variant Caller plugin and workflow.
@@ -1588,13 +1630,14 @@
 7:   -d,--input-depth               FILE       output of samtools depth. if provided, will cause generation of gvcf (optional, stdin ok)
 7:   -m,--min-depth                 INT        minimum coverage depth in GVCF output (optional)
 7: 
-5/8 Test #7: tvcutils_unify_vcf_call ..........................   Passed    0.01 sec
+4/8 Test #7: tvcutils_unify_vcf_call ..........................   Passed    0.01 sec
 test 8
     Start 8: tvcassembly_call
 
 8: Test command: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf/tvcassembly
 8: Working Directory: /build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf
 8: Test timeout computed to be: 10000000
+5/8 Test #1: tvc_call .........................................   Passed    0.14 sec
 8: tvcassembly 5.0-3 (e975447-9fa85fb) - Torrent Variant Caller - Long Indel Assembly
 8: 
 8: Usage: tvcassembly [options]
@@ -1621,33 +1664,33 @@
 8:      --relative_strand_bias             FLOAT       (stbias) Variants with strand bias above this are not reported [0.80].
 8:      --output_mnv                       INT         (mnv) Output multi-nucleotide variants assembled in a region with multiple adjacent variants [0].
 8: 
-6/8 Test #8: tvcassembly_call .................................   Passed    0.01 sec
-2: Recalibration was detected from comment lines in bam file(s):
-2: 1 unique blocks of recalibration info detected.
-2: Loading systematic error contexts.
+6/8 Test #8: tvcassembly_call .................................   Passed    0.02 sec
 3: Recalibration was detected from comment lines in bam file(s):
 3: 1 unique blocks of recalibration info detected.
 3: Loading systematic error contexts.
+2: Recalibration was detected from comment lines in bam file(s):
+2: 1 unique blocks of recalibration info detected.
+2: Loading systematic error contexts.
 3: Loaded.
 2: Loaded.
+3: 
+3: 
+3: [tvc] Normal termination. Processing time: 4 seconds.
 2: Recalibration model: suppressed
 2: 
 2: 
-2: [tvc] Normal termination. Processing time: 1 seconds.
-3: 
-3: 
-3: [tvc] Normal termination. Processing time: 1 seconds.
-7/8 Test #2: tvc_test_1_thread_sse_off ........................   Passed    2.14 sec
-8/8 Test #3: tvc_test_4_threads_sse_off_with_parameter_file ...   Passed    2.16 sec
+2: [tvc] Normal termination. Processing time: 4 seconds.
+7/8 Test #2: tvc_test_1_thread_sse_off ........................   Passed    3.69 sec
+8/8 Test #3: tvc_test_4_threads_sse_off_with_parameter_file ...   Passed    3.68 sec
 
 100% tests passed, 0 tests failed out of 8
 
-Total Test time (real) =   2.19 sec
+Total Test time (real) =   3.75 sec
 make[1]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
    create-stamp debian/debhelper-build-stamp
    dh_prep
    dh_auto_install --destdir=debian/tvc/
-	cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/tvc-5.0.3\+git20151221.80e144e\+dfsg/debian/tvc AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+	cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/tvc-5.0.3\+git20151221.80e144e\+dfsg/debian/tvc AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
 make[1]: Entering directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
 /usr/bin/cmake -S/build/tvc-5.0.3+git20151221.80e144e+dfsg -B/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
 make  -f CMakeFiles/Makefile2 preinstall
@@ -1663,30 +1706,30 @@
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/bin/variant_caller_pipeline.py
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/sse
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/sse/motifset.txt
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test.bam.bai
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test_original.bed
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test_unmerged_detail.bed
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/reference.dict
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/reference.fasta
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test.bed
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test.bam
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/expected
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/expected/small_variants.vcf
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/expected/TSVC_variants.vcf
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/reference.fasta.fai
 -- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test_merged_plain.bed
--- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test.bam
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test.bam.bai
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test_original.bed
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test_unmerged_detail.bed
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/reference.fasta
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/reference.fasta.fai
+-- Installing: /build/tvc-5.0.3+git20151221.80e144e+dfsg/debian/tvc/usr/share/TVC/examples/example1/test.bed
 make[1]: Leaving directory '/build/tvc-5.0.3+git20151221.80e144e+dfsg/obj-arm-linux-gnueabihf'
    dh_installdocs
    dh_installchangelogs
@@ -1701,16 +1744,16 @@
    dh_strip -a
    dh_makeshlibs -a
    dh_shlibdeps -a
+dpkg-shlibdeps: warning: debian/tvc/usr/bin/tvcassembly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
 dpkg-shlibdeps: warning: debian/tvc/usr/bin/tvcutils contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
 dpkg-shlibdeps: warning: debian/tvc/usr/bin/tvc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
-dpkg-shlibdeps: warning: debian/tvc/usr/bin/tvcassembly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
 dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tvc/usr/bin/tvcutils debian/tvc/usr/bin/tvc were not linked against libdisorder.so.0 (they use none of the library's symbols)
    dh_installdeb
    dh_gencontrol
    dh_md5sums
    dh_builddeb
-dpkg-deb: building package 'tvc-dbgsym' in '../tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_armhf.deb'.
 dpkg-deb: building package 'tvc' in '../tvc_5.0.3+git20151221.80e144e+dfsg-5_armhf.deb'.
+dpkg-deb: building package 'tvc-dbgsym' in '../tvc-dbgsym_5.0.3+git20151221.80e144e+dfsg-5_armhf.deb'.
  dpkg-genbuildinfo --build=binary -O../tvc_5.0.3+git20151221.80e144e+dfsg-5_armhf.buildinfo
  dpkg-genchanges --build=binary -O../tvc_5.0.3+git20151221.80e144e+dfsg-5_armhf.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -1718,12 +1761,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/7054/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/7054/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/30698 and its subdirectories
-I: Current time: Thu May  4 23:29:43 -12 2023
-I: pbuilder-time-stamp: 1683286183
+I: removing directory /srv/workspace/pbuilder/7054 and its subdirectories
+I: Current time: Sat May  6 01:40:28 +14 2023
+I: pbuilder-time-stamp: 1683286828