Diff of the two buildlogs: -- --- b1/build.log 2023-04-14 01:35:01.516882472 +0000 +++ b2/build.log 2023-04-14 01:44:35.603396986 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 13 13:27:18 -12 2023 -I: pbuilder-time-stamp: 1681435638 +I: Current time: Thu May 16 21:58:03 +14 2024 +I: pbuilder-time-stamp: 1715846283 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./stimfit_0.16.0.orig.tar.gz] I: copying [./stimfit_0.16.0-1.2.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Jan 8 07:45:28 2023 -12 +gpgv: Signature made Mon Jan 9 09:45:28 2023 +14 gpgv: using RSA key 08E2400FF7FE8FEDE3ACB52818147B073BAD2B07 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./stimfit_0.16.0-1.2.dsc: no acceptable signature found @@ -28,137 +28,146 @@ dpkg-source: info: applying python3.10.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/10831/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/39896/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/39896/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/39896/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' - INVOCATION_ID='c8ead730df604b53b97d7f4f099715fd' + INVOCATION_ID='51a099d9e2534676a03a8eba495ecfdf' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='de_CH:de' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='10831' + PPID='39896' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PtVlrO2y/pbuilderrc_TAdx --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PtVlrO2y/b1 --logfile b1/build.log stimfit_0.16.0-1.2.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PtVlrO2y/pbuilderrc_ynik --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PtVlrO2y/b2 --logfile b2/build.log --extrapackages usrmerge stimfit_0.16.0-1.2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + http_proxy='http://85.184.249.68:3128' I: uname -a - Linux ionos2-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6040 - -rwxr-xr-x 1 root root 1408088 Feb 12 08:21 bash - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown - -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp - -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 137160 Sep 20 2022 date - -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd - -rwxr-xr-x 1 root root 108940 Sep 20 2022 df - -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir - -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 34664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt - -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount - -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln - -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login - -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls - -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk - -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more - -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount - -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint - -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 18 05:00 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 08:21 rbash -> bash - -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm - -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts - -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty - -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su - -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile - -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch - -rwxr-xr-x 1 root root 34664 Sep 20 2022 true - -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount - -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/10831/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1408088 Feb 13 2023 bash + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown + -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp + -rwxr-xr-x 1 root root 136916 Jan 6 2023 dash + -rwxr-xr-x 1 root root 137160 Sep 21 2022 date + -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd + -rwxr-xr-x 1 root root 108940 Sep 21 2022 df + -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir + -rwxr-xr-x 1 root root 87760 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 34664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 84272 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 218680 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 21916 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln + -rwxr-xr-x 1 root root 55600 Mar 24 2023 login + -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls + -rwxr-xr-x 1 root root 214568 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 63016 Mar 24 2023 more + -rwsr-xr-x 1 root root 58912 Mar 24 2023 mount + -rwxr-xr-x 1 root root 13856 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 19 2022 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 2023 rbash -> bash + -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm + -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 133224 Jan 6 2023 sed + lrwxrwxrwx 1 root root 4 Jan 6 2023 sh -> dash + -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty + -rwsr-xr-x 1 root root 83492 Mar 24 2023 su + -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch + -rwxr-xr-x 1 root root 34664 Sep 21 2022 true + -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Mar 24 2023 umount + -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 71216 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/39896/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -505,7 +514,7 @@ Get: 275 http://deb.debian.org/debian bookworm/main i386 python3-wxgtk4.0 i386 4.2.0+dfsg-3 [7045 kB] Get: 276 http://deb.debian.org/debian bookworm/main i386 swig4.0 i386 4.1.0-0.2 [1445 kB] Get: 277 http://deb.debian.org/debian bookworm/main i386 swig all 4.1.0-0.2 [321 kB] -Fetched 174 MB in 7s (25.4 MB/s) +Fetched 174 MB in 4s (41.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libargon2-1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) @@ -1654,10 +1663,17 @@ Reading package lists... Building dependency tree... Reading state information... +usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/stimfit-0.16.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../stimfit_0.16.0-1.2_source.changes +I: user script /srv/workspace/pbuilder/39896/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/39896/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/stimfit-0.16.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../stimfit_0.16.0-1.2_source.changes dpkg-buildpackage: info: source package stimfit dpkg-buildpackage: info: source version 0.16.0-1.2 dpkg-buildpackage: info: source distribution unstable @@ -1944,7 +1960,7 @@ PYTHON=/usr/bin/python3.11 PYTHON_VERSION=3.11 ./configure --enable-python --enable-debian --with-biosiglite --prefix=/build/stimfit-0.16.0/debian/tmp/usr --with-wx-config="wx-config --toolkit=gtk3" checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes -checking for a race-free mkdir -p... /bin/mkdir -p +checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes @@ -1962,21 +1978,21 @@ checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... gcc3 -checking build system type... i686-pc-linux-gnu -checking host system type... i686-pc-linux-gnu +checking build system type... x86_64-pc-linux-gnux32 +checking host system type... x86_64-pc-linux-gnux32 checking how to print strings... printf -checking for a sed that does not truncate output... /bin/sed -checking for grep that handles long lines and -e... /bin/grep -checking for egrep... /bin/grep -E -checking for fgrep... /bin/grep -F +checking for a sed that does not truncate output... /usr/bin/sed +checking for grep that handles long lines and -e... /usr/bin/grep +checking for egrep... /usr/bin/grep -E +checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 -checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop -checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop +checking how to convert x86_64-pc-linux-gnux32 file names to x86_64-pc-linux-gnux32 format... func_convert_file_noop +checking how to convert x86_64-pc-linux-gnux32 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump @@ -1989,8 +2005,8 @@ checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no -checking for a working dd... /bin/dd -checking how to truncate binary pipes... /bin/dd bs=4096 count=1 +checking for a working dd... /usr/bin/dd +checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes @@ -2010,7 +2026,7 @@ checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes -checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes +checking whether the gcc linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate @@ -2033,15 +2049,15 @@ checking for g++ option to enable C++11 features... none needed checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E -checking for ld used by g++... /usr/bin/ld -checking if the linker (/usr/bin/ld) is GNU ld... yes -checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes +checking for ld used by g++... /usr/bin/ld -m elf_i386 +checking if the linker (/usr/bin/ld -m elf_i386) is GNU ld... yes +checking whether the g++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes -checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes +checking whether the g++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for kernel... linux or similar @@ -2115,14 +2131,21 @@ make[3]: Entering directory '/build/stimfit-0.16.0/src' Making all in libbiosiglite make[4]: Entering directory '/build/stimfit-0.16.0/src/libbiosiglite' - CC libbiosiglite_la-sopen_alpha_read.lo CC libbiosiglite_la-sopen_abf_read.lo + CC libbiosiglite_la-sopen_alpha_read.lo CC libbiosiglite_la-sopen_axg_read.lo CC libbiosiglite_la-sopen_cfs_read.lo CC libbiosiglite_la-sopen_heka_read.lo CC libbiosiglite_la-sopen_igor.lo CC libbiosiglite_la-sopen_rhd2000_read.lo CC libbiosiglite_la-sopen_scp_read.lo + CXX libbiosiglite_la-scp-decode.lo + CC libbiosiglite_la-crc4scp.lo + CC libbiosiglite_la-sopen_scp_write.lo + CC libbiosiglite_la-sandbox.lo + CC libbiosiglite_la-biosig.lo + CC libbiosiglite_la-biosig2.lo + CC libbiosiglite_la-biosig-HL7aECG-stub.lo biosig4c++/t210/sopen_alpha_read.c: In function 'sopen_alpha_read': biosig4c++/t210/sopen_alpha_read.c:381:41: warning: implicit declaration of function 'FreeTextEvent' [-Wimplicit-function-declaration] 381 | FreeTextEvent(hdr, n, t4); @@ -2144,6 +2167,11 @@ biosig4c++/t210/../biosig.h:533:19: note: declared here 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ | ^~~~~~~~~~~~~~~~~~~~~~~~ +biosig4c++/t210/sopen_axg_read.c: In function 'sopen_axg_read': +biosig4c++/t210/sopen_axg_read.c:612:17: warning: implicit declaration of function 'strptime'; did you mean 'strftime'? [-Wimplicit-function-declaration] + 612 | strptime(strstr(Notes,"Created on ")+11, "%a %b %d %Y", &T); + | ^~~~~~~~ + | strftime In file included from biosig4c++/t210/sopen_heka_read.c:29: biosig4c++/t210/../biosig.h:554:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] 554 | ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); @@ -2151,18 +2179,63 @@ biosig4c++/t210/../biosig.h:533:19: note: declared here 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ | ^~~~~~~~~~~~~~~~~~~~~~~~ -biosig4c++/t210/sopen_axg_read.c: In function 'sopen_axg_read': -biosig4c++/t210/sopen_axg_read.c:612:17: warning: implicit declaration of function 'strptime'; did you mean 'strftime'? [-Wimplicit-function-declaration] - 612 | strptime(strstr(Notes,"Created on ")+11, "%a %b %d %Y", &T); - | ^~~~~~~~ - | strftime - CXX libbiosiglite_la-scp-decode.lo - CC libbiosiglite_la-crc4scp.lo - CC libbiosiglite_la-sopen_scp_write.lo - CC libbiosiglite_la-sandbox.lo - CC libbiosiglite_la-biosig.lo - CC libbiosiglite_la-biosig2.lo - CC libbiosiglite_la-biosig-HL7aECG-stub.lo +In file included from biosig4c++/test0/sandbox.c:31: +biosig4c++/test0/../biosig.h:554:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] + 554 | ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); + | ^~~~~~~~~~~~~~~~~~~~~~~~ +biosig4c++/test0/../biosig.h:533:19: note: declared here + 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ + | ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from biosig4c++/biosig2.c:28: +biosig4c++/biosig.h:554:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] + 554 | ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); + | ^~~~~~~~~~~~~~~~~~~~~~~~ +biosig4c++/biosig.h:533:19: note: declared here + 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ + | ^~~~~~~~~~~~~~~~~~~~~~~~ +biosig4c++/biosig2.c: In function 'biosig_set_patient_name_structured': +biosig4c++/biosig2.c:428:52: warning: format '%f' expects argument of type 'double', but argument 3 has type 'const char *' [-Wformat=] + 428 | fprintf(stderr,"Error in function %f: total length of name too large (%i > %i)\n",__func__,len1+len2+len3+2,MAX_LENGTH_NAME); + | ~^ ~~~~~~~~ + | | | + | double const char * + | %s +biosig4c++/biosig2.c: At top level: +biosig4c++/biosig2.c:841:56: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] + 841 | int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot) { + | ^~~~~~~~~~~~~~~~~~~~~~~~ +biosig4c++/biosig.h:533:19: note: declared here + 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ + | ^~~~~~~~~~~~~~~~~~~~~~~~ + CC libbiosiglite_la-gdftime.lo +In file included from biosig4c++/biosig.c:65: +biosig4c++/biosig.h:554:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] + 554 | ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); + | ^~~~~~~~~~~~~~~~~~~~~~~~ +biosig4c++/biosig.h:533:19: note: declared here + 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ + | ^~~~~~~~~~~~~~~~~~~~~~~~ +biosig4c++/biosig.c: In function 'lcm': +biosig4c++/biosig.c:362:17: warning: 'B4C_ERRNUM' is deprecated [-Wdeprecated-declarations] + 362 | B4C_ERRNUM = B4C_UNSPECIFIC_ERROR; + | ^~~~~~~~~~ +biosig4c++/biosig.c:96:16: note: declared here + 96 | ATT_DEPREC int B4C_ERRNUM = 0; + | ^~~~~~~~~~ +biosig4c++/biosig.c:363:17: warning: 'B4C_ERRMSG' is deprecated [-Wdeprecated-declarations] + 363 | B4C_ERRMSG = "Computing LCM failed."; + | ^~~~~~~~~~ +biosig4c++/biosig.c:97:24: note: declared here + 97 | ATT_DEPREC const char *B4C_ERRMSG; + | ^~~~~~~~~~ +biosig4c++/biosig.c: In function 'sopen_extended': +biosig4c++/biosig.c:11269:33: warning: implicit declaration of function 'strptime'; did you mean 'strftime'? [-Wimplicit-function-declaration] +11269 | strptime(val,"%d/%m/%Y %T",&T); + | ^~~~~~~~ + | strftime +biosig4c++/biosig.c:7679:33: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 7679 | fread(buf,sz,1,fid); + | ^~~~~~~~~~~~~~~~~~~ biosig4c++/t210/scp-decode.cpp: In function 'void ReadByte(t1&)': biosig4c++/t210/scp-decode.cpp:278:17: warning: 'B4C_ERRNUM' is deprecated [-Wdeprecated-declarations] 278 | B4C_ERRNUM = B4C_INSUFFICIENT_MEMORY; @@ -2491,7 +2564,6 @@ biosig4c++/t210/scp-decode.cpp:2449:85: warning: statement has no effect [-Wunused-value] 2449 | mask<<2; | ~~~~^~~ - CC libbiosiglite_la-gdftime.lo biosig4c++/t210/scp-decode.cpp: In instantiation of 'void ReadByte(t1&) [with t1 = unsigned int]': biosig4c++/t210/scp-decode.cpp:378:10: required from here biosig4c++/t210/scp-decode.cpp:278:17: warning: 'B4C_ERRNUM' is deprecated [-Wdeprecated-declarations] @@ -2645,63 +2717,7 @@ biosig4c++/t210/codes.h:26:13: warning: 'STR_NULL' defined but not used [-Wunused-variable] 26 | static char STR_NULL[]=" unspecified/unknown "; | ^~~~~~~~ -In file included from biosig4c++/test0/sandbox.c:31: -biosig4c++/test0/../biosig.h:554:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] - 554 | ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); - | ^~~~~~~~~~~~~~~~~~~~~~~~ -biosig4c++/test0/../biosig.h:533:19: note: declared here - 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ - | ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from biosig4c++/biosig.c:65: -biosig4c++/biosig.h:554:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] - 554 | ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); - | ^~~~~~~~~~~~~~~~~~~~~~~~ -biosig4c++/biosig.h:533:19: note: declared here - 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ - | ^~~~~~~~~~~~~~~~~~~~~~~~ CC libbiosiglite_la-mdc_ecg_codes.lo -In file included from biosig4c++/biosig2.c:28: -biosig4c++/biosig.h:554:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] - 554 | ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); - | ^~~~~~~~~~~~~~~~~~~~~~~~ -biosig4c++/biosig.h:533:19: note: declared here - 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ - | ^~~~~~~~~~~~~~~~~~~~~~~~ -biosig4c++/biosig2.c: In function 'biosig_set_patient_name_structured': -biosig4c++/biosig2.c:428:52: warning: format '%f' expects argument of type 'double', but argument 3 has type 'const char *' [-Wformat=] - 428 | fprintf(stderr,"Error in function %f: total length of name too large (%i > %i)\n",__func__,len1+len2+len3+2,MAX_LENGTH_NAME); - | ~^ ~~~~~~~~ - | | | - | double const char * - | %s -biosig4c++/biosig2.c: At top level: -biosig4c++/biosig2.c:841:56: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] - 841 | int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot) { - | ^~~~~~~~~~~~~~~~~~~~~~~~ -biosig4c++/biosig.h:533:19: note: declared here - 533 | struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ - | ^~~~~~~~~~~~~~~~~~~~~~~~ -biosig4c++/biosig.c: In function 'lcm': -biosig4c++/biosig.c:362:17: warning: 'B4C_ERRNUM' is deprecated [-Wdeprecated-declarations] - 362 | B4C_ERRNUM = B4C_UNSPECIFIC_ERROR; - | ^~~~~~~~~~ -biosig4c++/biosig.c:96:16: note: declared here - 96 | ATT_DEPREC int B4C_ERRNUM = 0; - | ^~~~~~~~~~ -biosig4c++/biosig.c:363:17: warning: 'B4C_ERRMSG' is deprecated [-Wdeprecated-declarations] - 363 | B4C_ERRMSG = "Computing LCM failed."; - | ^~~~~~~~~~ -biosig4c++/biosig.c:97:24: note: declared here - 97 | ATT_DEPREC const char *B4C_ERRMSG; - | ^~~~~~~~~~ -biosig4c++/biosig.c: In function 'sopen_extended': -biosig4c++/biosig.c:11269:33: warning: implicit declaration of function 'strptime'; did you mean 'strftime'? [-Wimplicit-function-declaration] -11269 | strptime(val,"%d/%m/%Y %T",&T); - | ^~~~~~~~ - | strftime -biosig4c++/biosig.c:7679:33: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 7679 | fread(buf,sz,1,fid); - | ^~~~~~~~~~~~~~~~~~~ CC libbiosiglite_la-physicalunits.lo biosig4c++/biosig.c:11925:65: warning: '%s' directive output may be truncated writing up to 132 bytes into a region of size 77 [-Wformat-truncation=] 11925 | snprintf(cmd,MAX_LENGTH_PID+1,"%s %c %s %s",hdr->Patient.Id,GENDER[hdr->Patient.Sex],tmp,hdr->Patient.Name); @@ -2730,6 +2746,64 @@ CC cfs.lo CXX hdf5lib.lo CXX abflib.lo + CXX abffiles.lo + CXX csynch.lo + CXX filedesc.lo + CXX FileReadCache.lo + CXX FileIO.lo + CXX abfheadr.lo + CXX abfhwave.lo +./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_Initialize(ABFFileHeader*)': +./abf/axon/AxAbfFio32/abfheadr.cpp:65:10: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct ABFFileHeader'; use assignment or value-initialization instead [-Wclass-memaccess] + 65 | memset(&NewFH, '\0', sizeof(NewFH)); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ./abf/axon/AxAbfFio32/abfheadr.cpp:17: +./abf/axon/AxAbfFio32/abfheadr.h:560:8: note: 'struct ABFFileHeader' declared here + 560 | struct ABFFileHeader // The total header length = 6144 bytes. + | ^~~~~~~~~~~~~ +./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_DemoteHeader(ABFFileHeader*, const ABFFileHeader*)': +./abf/axon/AxAbfFio32/abfheadr.cpp:1238:13: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of a non-trivial type 'struct ABFFileHeader' leaves 4096 bytes unchanged [-Wclass-memaccess] + 1238 | memcpy( pOut, pIn, ABF_OLDHEADERSIZE ); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +./abf/axon/AxAbfFio32/abfheadr.h:560:8: note: 'struct ABFFileHeader' declared here + 560 | struct ABFFileHeader // The total header length = 6144 bytes. + | ^~~~~~~~~~~~~ +./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_PromoteHeader(ABFFileHeader*, const ABFFileHeader*)': +./abf/axon/AxAbfFio32/abfheadr.cpp:1372:10: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct ABFFileHeader'; use assignment or value-initialization instead [-Wclass-memaccess] + 1372 | memset( pOut, 0, ABF_HEADERSIZE); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +./abf/axon/AxAbfFio32/abfheadr.h:560:8: note: 'struct ABFFileHeader' declared here + 560 | struct ABFFileHeader // The total header length = 6144 bytes. + | ^~~~~~~~~~~~~ +./abf/axon/AxAbfFio32/abfheadr.cpp:1373:10: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of a non-trivial type 'struct ABFFileHeader' leaves 4096 bytes unchanged [-Wclass-memaccess] + 1373 | memcpy( pOut, pIn, ABF_OLDHEADERSIZE ); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +./abf/axon/AxAbfFio32/abfheadr.h:560:8: note: 'struct ABFFileHeader' declared here + 560 | struct ABFFileHeader // The total header length = 6144 bytes. + | ^~~~~~~~~~~~~ +./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_DemoteHeader(ABFFileHeader*, const ABFFileHeader*)': +./abf/axon/AxAbfFio32/abfheadr.cpp:1288:11: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 84 equals destination size [-Wstringop-truncation] + 1288 | strncpy( pOut->_sDACFilePath, pIn->sDACFilePath[uDAC], ABF_DACFILEPATHLEN ); + | ^ +./abf/axon/AxAbfFio32/abfheadr.cpp:1312:11: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 80 equals destination size [-Wstringop-truncation] + 1312 | strncpy( pOut->_sParamValueList, pIn->sULParamValueList[uDAC], ABF_VARPARAMLISTLEN ); + | ^ +./abf/axon/AxAbfFio32/abfheadr.cpp:1323:11: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 56 bytes from a string of length 127 [-Wstringop-truncation] + 1323 | strncpy( pOut->_sFileComment, pIn->sFileComment, ABF_OLDFILECOMMENTLEN ); + | ^ +./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_Initialize(ABFFileHeader*)': +./abf/axon/AxAbfFio32/abfheadr.cpp:120:14: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying 8 bytes from a string of length 10 [-Wstringop-truncation] + 120 | strncpy(NewFH.sADCUnits[i], "pA ", ABF_ADCUNITLEN); + | ^ +./abf/axon/AxAbfFio32/abfheadr.cpp:142:14: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying 8 bytes from a string of length 10 [-Wstringop-truncation] + 142 | strncpy(NewFH.sDACChannelUnits[i], "mV ", ABF_ADCUNITLEN); + | ^ +./abf/axon/AxAbfFio32/abfheadr.cpp:119:14: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 10 bytes from a string of length 12 [-Wstringop-truncation] + 119 | strncpy(NewFH.sADCChannelName[i], szName, ABF_ADCNAMELEN); + | ^ +./abf/axon/AxAbfFio32/abfheadr.cpp:141:14: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 10 bytes from a string of length 12 [-Wstringop-truncation] + 141 | strncpy(NewFH.sDACChannelName[i], szName, ABF_DACNAMELEN); + | ^ ./recording.cpp: In constructor 'Recording::Recording()': ./recording.cpp:24:21: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] 24 | : ChannelArray(0) @@ -3090,9 +3164,23 @@ ./stfio.cpp:429:40: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] 429 | catch (const std::out_of_range e) { | ^ - CXX abffiles.lo - CXX csynch.lo - CXX filedesc.lo + CXX Oldheadr.lo +In file included from /usr/include/c++/12/bits/shared_ptr.h:53, + from /usr/include/c++/12/memory:77, + from ./abf/axon/Common/FileReadCache.hpp:19, + from ./abf/axon/Common/FileReadCache.cpp:13: +In constructor 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = unsigned char*; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]', + inlined from 'std::__shared_count<_Lp>::__shared_count(_Ptr, std::false_type) [with _Ptr = unsigned char*; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]' at /usr/include/c++/12/bits/shared_ptr_base.h:928:22, + inlined from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Yp*) [with _Yp = unsigned char; = void; _Tp = unsigned char; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]' at /usr/include/c++/12/bits/shared_ptr_base.h:1469:17, + inlined from 'std::__shared_ptr<_Tp, _Lp>::_SafeConv<_Yp> std::__shared_ptr<_Tp, _Lp>::reset(_Yp*) [with _Yp = unsigned char; _Tp = unsigned char; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]' at /usr/include/c++/12/bits/shared_ptr_base.h:1650:4, + inlined from 'BOOL CFileReadCache::Initialize(UINT, UINT, FILEHANDLE, LONGLONG, UINT)' at ./abf/axon/Common/FileReadCache.cpp:67:22: +/usr/include/c++/12/bits/shared_ptr_base.h:921:15: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] + 921 | delete __p; + | ^~~~~~~~~~ +./abf/axon/Common/FileReadCache.cpp: In member function 'BOOL CFileReadCache::Initialize(UINT, UINT, FILEHANDLE, LONGLONG, UINT)': +./abf/axon/Common/FileReadCache.cpp:67:54: note: returned from 'void* operator new [](std::size_t)' + 67 | m_pItemCache.reset(new BYTE[uItemSize * uCacheSize]); + | ^ In file included from /usr/include/c++/12/bits/shared_ptr.h:53, from /usr/include/c++/12/memory:77, from ./abf/axon/AxAbfFio32/./../Common/ArrayPtr.hpp:20, @@ -3115,104 +3203,14 @@ ./abf/axon/AxAbfFio32/./../Common/ArrayPtr.hpp:137:19: note: returned from 'void* operator new [](std::size_t)' 137 | m_pArray.reset(new ITEM[uCount]); | ^~~~~~~~~~~~~~~~ - CXX FileReadCache.lo - CXX FileIO.lo - CXX abfheadr.lo - CXX abfhwave.lo -./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_Initialize(ABFFileHeader*)': -./abf/axon/AxAbfFio32/abfheadr.cpp:65:10: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct ABFFileHeader'; use assignment or value-initialization instead [-Wclass-memaccess] - 65 | memset(&NewFH, '\0', sizeof(NewFH)); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ./abf/axon/AxAbfFio32/abfheadr.cpp:17: -./abf/axon/AxAbfFio32/abfheadr.h:560:8: note: 'struct ABFFileHeader' declared here - 560 | struct ABFFileHeader // The total header length = 6144 bytes. - | ^~~~~~~~~~~~~ -./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_DemoteHeader(ABFFileHeader*, const ABFFileHeader*)': -./abf/axon/AxAbfFio32/abfheadr.cpp:1238:13: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of a non-trivial type 'struct ABFFileHeader' leaves 4096 bytes unchanged [-Wclass-memaccess] - 1238 | memcpy( pOut, pIn, ABF_OLDHEADERSIZE ); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -./abf/axon/AxAbfFio32/abfheadr.h:560:8: note: 'struct ABFFileHeader' declared here - 560 | struct ABFFileHeader // The total header length = 6144 bytes. - | ^~~~~~~~~~~~~ -./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_PromoteHeader(ABFFileHeader*, const ABFFileHeader*)': -./abf/axon/AxAbfFio32/abfheadr.cpp:1372:10: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct ABFFileHeader'; use assignment or value-initialization instead [-Wclass-memaccess] - 1372 | memset( pOut, 0, ABF_HEADERSIZE); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -./abf/axon/AxAbfFio32/abfheadr.h:560:8: note: 'struct ABFFileHeader' declared here - 560 | struct ABFFileHeader // The total header length = 6144 bytes. - | ^~~~~~~~~~~~~ -./abf/axon/AxAbfFio32/abfheadr.cpp:1373:10: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of a non-trivial type 'struct ABFFileHeader' leaves 4096 bytes unchanged [-Wclass-memaccess] - 1373 | memcpy( pOut, pIn, ABF_OLDHEADERSIZE ); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -./abf/axon/AxAbfFio32/abfheadr.h:560:8: note: 'struct ABFFileHeader' declared here - 560 | struct ABFFileHeader // The total header length = 6144 bytes. - | ^~~~~~~~~~~~~ - CXX Oldheadr.lo -./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_DemoteHeader(ABFFileHeader*, const ABFFileHeader*)': -./abf/axon/AxAbfFio32/abfheadr.cpp:1288:11: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 84 equals destination size [-Wstringop-truncation] - 1288 | strncpy( pOut->_sDACFilePath, pIn->sDACFilePath[uDAC], ABF_DACFILEPATHLEN ); - | ^ -./abf/axon/AxAbfFio32/abfheadr.cpp:1312:11: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 80 equals destination size [-Wstringop-truncation] - 1312 | strncpy( pOut->_sParamValueList, pIn->sULParamValueList[uDAC], ABF_VARPARAMLISTLEN ); - | ^ -./abf/axon/AxAbfFio32/abfheadr.cpp:1323:11: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 56 bytes from a string of length 127 [-Wstringop-truncation] - 1323 | strncpy( pOut->_sFileComment, pIn->sFileComment, ABF_OLDFILECOMMENTLEN ); - | ^ -In file included from /usr/include/c++/12/bits/shared_ptr.h:53, - from /usr/include/c++/12/memory:77, - from ./abf/axon/Common/FileReadCache.hpp:19, - from ./abf/axon/Common/FileReadCache.cpp:13: -In constructor 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = unsigned char*; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]', - inlined from 'std::__shared_count<_Lp>::__shared_count(_Ptr, std::false_type) [with _Ptr = unsigned char*; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]' at /usr/include/c++/12/bits/shared_ptr_base.h:928:22, - inlined from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Yp*) [with _Yp = unsigned char; = void; _Tp = unsigned char; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]' at /usr/include/c++/12/bits/shared_ptr_base.h:1469:17, - inlined from 'std::__shared_ptr<_Tp, _Lp>::_SafeConv<_Yp> std::__shared_ptr<_Tp, _Lp>::reset(_Yp*) [with _Yp = unsigned char; _Tp = unsigned char; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]' at /usr/include/c++/12/bits/shared_ptr_base.h:1650:4, - inlined from 'BOOL CFileReadCache::Initialize(UINT, UINT, FILEHANDLE, LONGLONG, UINT)' at ./abf/axon/Common/FileReadCache.cpp:67:22: -/usr/include/c++/12/bits/shared_ptr_base.h:921:15: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] - 921 | delete __p; - | ^~~~~~~~~~ -./abf/axon/Common/FileReadCache.cpp: In member function 'BOOL CFileReadCache::Initialize(UINT, UINT, FILEHANDLE, LONGLONG, UINT)': -./abf/axon/Common/FileReadCache.cpp:67:54: note: returned from 'void* operator new [](std::size_t)' - 67 | m_pItemCache.reset(new BYTE[uItemSize * uCacheSize]); - | ^ -./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_Initialize(ABFFileHeader*)': -./abf/axon/AxAbfFio32/abfheadr.cpp:120:14: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying 8 bytes from a string of length 10 [-Wstringop-truncation] - 120 | strncpy(NewFH.sADCUnits[i], "pA ", ABF_ADCUNITLEN); - | ^ -./abf/axon/AxAbfFio32/abfheadr.cpp:142:14: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated copying 8 bytes from a string of length 10 [-Wstringop-truncation] - 142 | strncpy(NewFH.sDACChannelUnits[i], "mV ", ABF_ADCUNITLEN); - | ^ -./abf/axon/AxAbfFio32/abfheadr.cpp:119:14: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 10 bytes from a string of length 12 [-Wstringop-truncation] - 119 | strncpy(NewFH.sADCChannelName[i], szName, ABF_ADCNAMELEN); - | ^ -./abf/axon/AxAbfFio32/abfheadr.cpp:141:14: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 10 bytes from a string of length 12 [-Wstringop-truncation] - 141 | strncpy(NewFH.sDACChannelName[i], szName, ABF_DACNAMELEN); - | ^ CXX abfutil.lo CXX msbincvt.lo CXX unix.lo CXX abferror.lo -./abf/axon/Common/unix.cpp: In function 'FILE* c_CreateFile(LPCSTR, DWORD, DWORD, LPSECURITY_ATTRIBUTES, DWORD, DWORD, HANDLE)': -./abf/axon/Common/unix.cpp:271:12: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 1024 equals destination size [-Wstringop-truncation] - 271 | strncpy(fname, filename, 1024); /* Get filename in near var */ - | ^ -In file included from /usr/include/string.h:535, - from /usr/include/memory.h:29, - from ./abf/axon/AxAbfFio32/../Common/wincpp.hpp:23, - from ./abf/axon/AxAbfFio32/abfutil.cpp:10: -In function 'char* strncpy(char*, const char*, size_t)', - inlined from 'void ABFU_GetABFString(LPSTR, int, LPCSTR, int)' at ./abf/axon/AxAbfFio32/abfutil.cpp:145:11: -/usr/include/i386-linux-gnu/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' destination unchanged after copying no bytes [-Wstringop-truncation] - 95 | return __builtin___strncpy_chk (__dest, __src, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ - 96 | __glibc_objsize (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/i386-linux-gnu/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified size between 2147483648 and 0 exceeds maximum object size 2147483647 [-Wstringop-overflow=] - CXX axatffio32.lo ./abf/axon/AxAbfFio32/Oldheadr.cpp: In function 'BOOL OLDH_ReadOldHeader(FILEHANDLE, UINT, int, ABFFileHeader*, long int, int*)': ./abf/axon/AxAbfFio32/Oldheadr.cpp:1831:11: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 1831 | strncpy(pFH->sArithmeticOperator, "+ ", ABF_ARITHMETICOPLEN); | ^ - CXX fileio2.lo ./abf/axon/AxAbfFio32/Oldheadr.cpp:670:11: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 8 bytes from a string of length 63 [-Wstringop-truncation] 670 | strncpy(DACLabel, Label+ABF_OLDUNITLEN, ABF_DACUNITLEN); | ^ @@ -3234,10 +3232,34 @@ ./abf/axon/AxAbfFio32/Oldheadr.cpp:1087:11: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 8 bytes from a string of length 31 [-Wstringop-truncation] 1087 | strncpy(pFH->sDACChannelUnits[0], DACLabel, ABF_DACUNITLEN); | ^ + CXX axatffio32.lo + CXX fileio2.lo CXX ProtocolReaderABF2.lo +./abf/axon/Common/unix.cpp: In function 'FILE* c_CreateFile(LPCSTR, DWORD, DWORD, LPSECURITY_ATTRIBUTES, DWORD, DWORD, HANDLE)': +./abf/axon/Common/unix.cpp:271:12: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 1024 equals destination size [-Wstringop-truncation] + 271 | strncpy(fname, filename, 1024); /* Get filename in near var */ + | ^ +In file included from /usr/include/string.h:535, + from /usr/include/memory.h:29, + from ./abf/axon/AxAbfFio32/../Common/wincpp.hpp:23, + from ./abf/axon/AxAbfFio32/abfutil.cpp:10: +In function 'char* strncpy(char*, const char*, size_t)', + inlined from 'void ABFU_GetABFString(LPSTR, int, LPCSTR, int)' at ./abf/axon/AxAbfFio32/abfutil.cpp:145:11: +/usr/include/i386-linux-gnu/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' destination unchanged after copying no bytes [-Wstringop-truncation] + 95 | return __builtin___strncpy_chk (__dest, __src, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ + 96 | __glibc_objsize (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/i386-linux-gnu/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified size between 2147483648 and 0 exceeds maximum object size 2147483647 [-Wstringop-overflow=] CXX SimpleStringCache.lo CXX abf2headr.lo CXX atflib.lo + CXX axglib.lo + CXX AxoGraph_ReadWrite.lo + CXX fileUtils.lo + CXX stringUtils.lo + CXX byteswap.lo + CXX hekalib.lo ./abf/axon2/abf2headr.cpp: In function 'void ABF2H_Initialize(ABF2FileHeader*)': ./abf/axon2/abf2headr.cpp:29:10: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct ABF2FileHeader'; use assignment or value-initialization instead [-Wclass-memaccess] 29 | memset(pFH, '\0', sizeof(*pFH)); @@ -3258,8 +3280,10 @@ ./abf/axon2/abf2headr.cpp:98:14: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 10 bytes from a string of length 12 [-Wstringop-truncation] 98 | strncpy(pFH->sDACChannelName[i], szName, ABF2_DACNAMELEN); | ^ - CXX axglib.lo - CXX AxoGraph_ReadWrite.lo + CXX igorlib.lo + CC CrossPlatformFileIO.lo + CC WriteWave.lo + CXX common.lo In file included from /usr/include/c++/12/bits/shared_ptr.h:53, from /usr/include/c++/12/memory:77, from ./abf/axon2/../axon/Common/ArrayPtr.hpp:20, @@ -3280,12 +3304,9 @@ ./abf/axon2/../axon/Common/ArrayPtr.hpp:137:19: note: returned from 'void* operator new [](std::size_t)' 137 | m_pArray.reset(new ITEM[uCount]); | ^~~~~~~~~~~~~~~~ - CXX fileUtils.lo - CXX stringUtils.lo - CXX byteswap.lo - CXX hekalib.lo - CXX igorlib.lo - CC CrossPlatformFileIO.lo + CXX intanlib.lo + CXX streams.lo + CXX biosiglib.lo ./heka/hekalib.cpp: In function 'void ByteSwap(unsigned char*, int)': ./heka/hekalib.cpp:411:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 411 | register int i = 0; @@ -3293,11 +3314,6 @@ ./heka/hekalib.cpp:412:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 412 | register int j = n-1; | ^ - CC WriteWave.lo - CXX common.lo - CXX intanlib.lo - CXX streams.lo - CXX biosiglib.lo ./biosig/biosiglib.cpp:228:109: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 228 | sprintf(str,"v%i.%i.%i (compiled on %s %s)",BIOSIG_VERSION_MAJOR,BIOSIG_VERSION_MINOR,BIOSIG_PATCHLEVEL,__DATE__,__TIME__); | ^~~~~~~~ @@ -3348,6 +3364,14 @@ CXX libstimfit_la-graph.lo CXX libstimfit_la-printout.lo CXX libstimfit_la-parentframe.lo + CXX libstimfit_la-childframe.lo + CXX libstimfit_la-view.lo + CXX libstimfit_la-table.lo + CXX libstimfit_la-zoom.lo + CXX libstimfit_la-convertdlg.lo + CXX libstimfit_la-cursorsdlg.lo + CXX libstimfit_la-eventdlg.lo + CXX libstimfit_la-fitseldlg.lo In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, @@ -3355,6 +3379,12 @@ /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ +./gui/app.cpp:1437:30: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 1437 | verString << wxT(__DATE__) << wxT(", ") << wxT(__TIME__); + | ^ +./gui/app.cpp:1437:60: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 1437 | verString << wxT(__DATE__) << wxT(", ") << wxT(__TIME__); + | ^ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, @@ -3363,12 +3393,6 @@ /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ -./gui/app.cpp:1437:30: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 1437 | verString << wxT(__DATE__) << wxT(", ") << wxT(__TIME__); - | ^ -./gui/app.cpp:1437:60: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 1437 | verString << wxT(__DATE__) << wxT(", ") << wxT(__TIME__); - | ^ ./gui/unopt.cpp: In member function 'bool wxStfApp::Init_wxPython()': ./gui/unopt.cpp:178:23: warning: 'void PyEval_InitThreads()' is deprecated [-Wdeprecated-declarations] 178 | PyEval_InitThreads(); @@ -3378,6 +3402,111 @@ /usr/include/python3.11/ceval.h:132:37: note: declared here 132 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); | ^~~~~~~~~~~~~~~~~~ +./gui/unopt.cpp: In member function 'new_wxwindow wxStfParentFrame::MakePythonWindow(const std::string&, const std::string&, const std::string&, bool, bool, bool, int, int, double, double)': +/usr/include/python3.11/ceval.h:34:34: warning: 'PyObject* PyEval_CallObjectWithKeywords(PyObject*, PyObject*, PyObject*)' is deprecated [-Wdeprecated-declarations] + 34 | PyEval_CallObjectWithKeywords(callable, arg, (PyObject *)NULL) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +./gui/unopt.cpp:483:14: note: in expansion of macro 'PyEval_CallObject' + 483 | result = PyEval_CallObject(func, argtuple); + | ^~~~~~~~~~~~~~~~~ +/usr/include/python3.11/ceval.h:27:43: note: declared here + 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ./gui/././../../libstfio/stfio.h:71, + from ./gui/././../stf.h:80, + from ./gui/./app.h:178, + from ./gui/doc.cpp:35: +./gui/././../../libstfio/./recording.h: In copy constructor 'Recording::Recording(const Recording&)': +./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] + 41 | class StfioDll Recording { + | ^~~~~~~~~ +./gui/././../../libstfio/./recording.h:393:17: note: declared here + 393 | std::string time0, date; + | ^~~~~ +./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] + 41 | class StfioDll Recording { + | ^~~~~~~~~ +./gui/././../../libstfio/./recording.h:393:17: note: declared here + 393 | std::string time0, date; + | ^~~~~ +./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] + 41 | class StfioDll Recording { + | ^~~~~~~~~ +./gui/././../../libstfio/./recording.h:393:17: note: declared here + 393 | std::string time0, date; + | ^~~~~ +./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] + 41 | class StfioDll Recording { + | ^~~~~~~~~ +./gui/././../../libstfio/./recording.h:393:17: note: declared here + 393 | std::string time0, date; + | ^~~~~ +./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::date' is deprecated [-Wdeprecated-declarations] + 41 | class StfioDll Recording { + | ^~~~~~~~~ +./gui/././../../libstfio/./recording.h:393:24: note: declared here + 393 | std::string time0, date; + | ^~~~ +./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::date' is deprecated [-Wdeprecated-declarations] + 41 | class StfioDll Recording { + | ^~~~~~~~~ +./gui/././../../libstfio/./recording.h:393:24: note: declared here + 393 | std::string time0, date; + | ^~~~ +./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::date' is deprecated [-Wdeprecated-declarations] + 41 | class StfioDll Recording { + | ^~~~~~~~~ +./gui/././../../libstfio/./recording.h:393:24: note: declared here + 393 | std::string time0, date; + | ^~~~ +./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::date' is deprecated [-Wdeprecated-declarations] + 41 | class StfioDll Recording { + | ^~~~~~~~~ +./gui/././../../libstfio/./recording.h:393:24: note: declared here + 393 | std::string time0, date; + | ^~~~ +./gui/doc.cpp: In member function 'Recording wxStfDoc::ReorderChannels()': +./gui/doc.cpp:803:12: note: synthesized method 'Recording::Recording(const Recording&)' first required here + 803 | return writeRec; + | ^~~~~~~~ +./gui/doc.cpp: In member function 'void wxStfDoc::FitDecay(wxCommandEvent&)': +./gui/doc.cpp:1243:36: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] + 1243 | catch (const std::out_of_range e) { + | ^ +./gui/doc.cpp: In member function 'void wxStfDoc::LFit(wxCommandEvent&)': +./gui/doc.cpp:1278:36: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] + 1278 | catch (const std::out_of_range e) { + | ^ +./gui/doc.cpp:1299:36: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] + 1299 | catch (const std::out_of_range e) { + | ^ +./gui/doc.cpp: In member function 'void wxStfDoc::LnTransform(wxCommandEvent&)': +./gui/doc.cpp:1323:40: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] + 1323 | catch (const std::out_of_range e) { + | ^ +./gui/doc.cpp: In member function 'bool wxStfDoc::OnNewfromselectedThis()': +./gui/doc.cpp:1787:40: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] + 1787 | catch (const std::out_of_range e) { + | ^ +./gui/doc.cpp: In member function 'void wxStfDoc::SelectTracesOfType(wxCommandEvent&)': +./gui/doc.cpp:1855:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1855 | for (size_t n=0; n < (int)get()[GetCurChIndex()].size(); ++n) { + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +./gui/doc.cpp: In member function 'void wxStfDoc::MarkEvents(wxCommandEvent&)': +./gui/doc.cpp:2332:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 2332 | if (*cit + eventl >= cursec().get().size()) { + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21: +/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope: +/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: 'int _import_array()' defined but not used [-Wunused-function] + 1477 | _import_array(void) + | ^~~~~~~~~~~~~ +In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21: +/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope: +/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: 'int _import_array()' defined but not used [-Wunused-function] + 1477 | _import_array(void) + | ^~~~~~~~~~~~~ + CXX libstimfit_la-smalldlgs.lo ./gui/graph.cpp: In constructor 'wxStfGraph::wxStfGraph(wxView*, wxStfChildFrame*, const wxPoint&, const wxSize&, long int)': ./gui/graph.cpp:113:5: warning: 'wxPen::wxPen(const wxColour&, int, int)' is deprecated: use wxPENSTYLE_XXX constants [-Wdeprecated-declarations] 113 | standardPen(*wxBLACK,1,wxSOLID), //Solid black line @@ -3658,16 +3787,6 @@ /usr/include/wx-3.2/wx/gtk/brush.h:41:5: note: declared here 41 | wxBrush(const wxColour& col, int style); | ^~~~~~~ -./gui/unopt.cpp: In member function 'new_wxwindow wxStfParentFrame::MakePythonWindow(const std::string&, const std::string&, const std::string&, bool, bool, bool, int, int, double, double)': -/usr/include/python3.11/ceval.h:34:34: warning: 'PyObject* PyEval_CallObjectWithKeywords(PyObject*, PyObject*, PyObject*)' is deprecated [-Wdeprecated-declarations] - 34 | PyEval_CallObjectWithKeywords(callable, arg, (PyObject *)NULL) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -./gui/unopt.cpp:483:14: note: in expansion of macro 'PyEval_CallObject' - 483 | result = PyEval_CallObject(func, argtuple); - | ^~~~~~~~~~~~~~~~~ -/usr/include/python3.11/ceval.h:27:43: note: declared here - 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./gui/graph.cpp: In member function 'void wxStfGraph::DoPlot(wxDC*, const Vector_double&, int, int, int, plottype, int)': ./gui/graph.cpp:697:50: warning: 'std::mem_fun1_t<_Ret, _Tp, _Arg> std::mem_fun(_Ret (_Tp::*)(_Arg)) [with _Ret = long int; _Tp = wxStfGraph; _Arg = double]' is deprecated: use 'std::mem_fn' instead [-Wdeprecated-declarations] 697 | yFormatFunc = std::bind1st( std::mem_fun(&wxStfGraph::yFormatD), this); @@ -3743,109 +3862,6 @@ ./gui/graph.cpp:2096:46: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'unsigned int'} [-Wsign-compare] 2096 | if (!sec_attr.eventList.empty() && trace != Doc()->GetCurSecIndex()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21: -/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope: -/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: 'int _import_array()' defined but not used [-Wunused-function] - 1477 | _import_array(void) - | ^~~~~~~~~~~~~ -In file included from ./gui/././../../libstfio/stfio.h:71, - from ./gui/././../stf.h:80, - from ./gui/./app.h:178, - from ./gui/doc.cpp:35: -./gui/././../../libstfio/./recording.h: In copy constructor 'Recording::Recording(const Recording&)': -./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] - 41 | class StfioDll Recording { - | ^~~~~~~~~ -./gui/././../../libstfio/./recording.h:393:17: note: declared here - 393 | std::string time0, date; - | ^~~~~ -./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] - 41 | class StfioDll Recording { - | ^~~~~~~~~ -./gui/././../../libstfio/./recording.h:393:17: note: declared here - 393 | std::string time0, date; - | ^~~~~ -./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] - 41 | class StfioDll Recording { - | ^~~~~~~~~ -./gui/././../../libstfio/./recording.h:393:17: note: declared here - 393 | std::string time0, date; - | ^~~~~ -./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] - 41 | class StfioDll Recording { - | ^~~~~~~~~ -./gui/././../../libstfio/./recording.h:393:17: note: declared here - 393 | std::string time0, date; - | ^~~~~ -./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::date' is deprecated [-Wdeprecated-declarations] - 41 | class StfioDll Recording { - | ^~~~~~~~~ -./gui/././../../libstfio/./recording.h:393:24: note: declared here - 393 | std::string time0, date; - | ^~~~ -./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::date' is deprecated [-Wdeprecated-declarations] - 41 | class StfioDll Recording { - | ^~~~~~~~~ -./gui/././../../libstfio/./recording.h:393:24: note: declared here - 393 | std::string time0, date; - | ^~~~ -./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::date' is deprecated [-Wdeprecated-declarations] - 41 | class StfioDll Recording { - | ^~~~~~~~~ -./gui/././../../libstfio/./recording.h:393:24: note: declared here - 393 | std::string time0, date; - | ^~~~ -./gui/././../../libstfio/./recording.h:41:16: warning: 'Recording::date' is deprecated [-Wdeprecated-declarations] - 41 | class StfioDll Recording { - | ^~~~~~~~~ -./gui/././../../libstfio/./recording.h:393:24: note: declared here - 393 | std::string time0, date; - | ^~~~ -./gui/doc.cpp: In member function 'Recording wxStfDoc::ReorderChannels()': -./gui/doc.cpp:803:12: note: synthesized method 'Recording::Recording(const Recording&)' first required here - 803 | return writeRec; - | ^~~~~~~~ -./gui/doc.cpp: In member function 'void wxStfDoc::FitDecay(wxCommandEvent&)': -./gui/doc.cpp:1243:36: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] - 1243 | catch (const std::out_of_range e) { - | ^ -./gui/doc.cpp: In member function 'void wxStfDoc::LFit(wxCommandEvent&)': -./gui/doc.cpp:1278:36: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] - 1278 | catch (const std::out_of_range e) { - | ^ -./gui/doc.cpp:1299:36: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] - 1299 | catch (const std::out_of_range e) { - | ^ -./gui/doc.cpp: In member function 'void wxStfDoc::LnTransform(wxCommandEvent&)': -./gui/doc.cpp:1323:40: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] - 1323 | catch (const std::out_of_range e) { - | ^ -./gui/doc.cpp: In member function 'bool wxStfDoc::OnNewfromselectedThis()': -./gui/doc.cpp:1787:40: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] - 1787 | catch (const std::out_of_range e) { - | ^ -./gui/doc.cpp: In member function 'void wxStfDoc::SelectTracesOfType(wxCommandEvent&)': -./gui/doc.cpp:1855:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1855 | for (size_t n=0; n < (int)get()[GetCurChIndex()].size(); ++n) { - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -./gui/doc.cpp: In member function 'void wxStfDoc::MarkEvents(wxCommandEvent&)': -./gui/doc.cpp:2332:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 2332 | if (*cit + eventl >= cursec().get().size()) { - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21: -/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope: -/usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: 'int _import_array()' defined but not used [-Wunused-function] - 1477 | _import_array(void) - | ^~~~~~~~~~~~~ - CXX libstimfit_la-childframe.lo - CXX libstimfit_la-view.lo - CXX libstimfit_la-table.lo - CXX libstimfit_la-zoom.lo - CXX libstimfit_la-convertdlg.lo - CXX libstimfit_la-cursorsdlg.lo - CXX libstimfit_la-eventdlg.lo - CXX libstimfit_la-fitseldlg.lo - CXX libstimfit_la-smalldlgs.lo CXX libstimfit_la-usrdlg.lo CXXLD libstimfit.la make[4]: Leaving directory '/build/stimfit-0.16.0/src/stimfit' @@ -3856,6 +3872,9 @@ pystf.i:74: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. pystf.i:74: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. pystf.i:74: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. +cat ./gccwarn ./pystf_wrap.cxx > ./pystf_wrap_tmp.cxx +mv ./pystf_wrap_tmp.cxx ./pystf_wrap.cxx + CXX libpystf_la-pystf_wrap.lo In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, @@ -3863,9 +3882,6 @@ /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ -cat ./gccwarn ./pystf_wrap.cxx > ./pystf_wrap_tmp.cxx -mv ./pystf_wrap_tmp.cxx ./pystf_wrap.cxx - CXX libpystf_la-pystf_wrap.lo In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, @@ -3945,20 +3961,35 @@ ./src/test/gtest/include/gtest/gtest.h:1448:16: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'const int' [-Wsign-compare] 1448 | if (expected == actual) { | ~~~~~~~~~^~~~~~~~~ -In file included from ./src/test/recording.cpp:2: +In file included from ./src/test/section.cpp:2: ./src/test/gtest/include/gtest/gtest.h: In instantiation of 'testing::AssertionResult testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const T2&) [with T1 = unsigned int; T2 = int]': ./src/test/gtest/include/gtest/gtest.h:1484:23: required from 'static testing::AssertionResult testing::internal::EqHelper::Compare(const char*, const char*, const T1&, const T2&) [with T1 = unsigned int; T2 = int; bool lhs_is_null_literal = false]' -./src/test/recording.cpp:7:5: required from here +./src/test/section.cpp:6:5: required from here ./src/test/gtest/include/gtest/gtest.h:1448:16: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'const int' [-Wsign-compare] 1448 | if (expected == actual) { | ~~~~~~~~~^~~~~~~~~ -In file included from ./src/test/section.cpp:2: +In file included from ./src/test/recording.cpp:2: ./src/test/gtest/include/gtest/gtest.h: In instantiation of 'testing::AssertionResult testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const T2&) [with T1 = unsigned int; T2 = int]': ./src/test/gtest/include/gtest/gtest.h:1484:23: required from 'static testing::AssertionResult testing::internal::EqHelper::Compare(const char*, const char*, const T1&, const T2&) [with T1 = unsigned int; T2 = int; bool lhs_is_null_literal = false]' -./src/test/section.cpp:6:5: required from here +./src/test/recording.cpp:7:5: required from here ./src/test/gtest/include/gtest/gtest.h:1448:16: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'const int' [-Wsign-compare] 1448 | if (expected == actual) { | ~~~~~~~~~^~~~~~~~~ +In file included from ./src/test/gtest/src/gtest-all.cc:43: +./src/test/gtest/src/gtest-death-test.cc: In function 'bool testing::internal::StackGrowsDown()': +./src/test/gtest/src/gtest-death-test.cc:991:24: warning: 'dummy' may be used uninitialized [-Wmaybe-uninitialized] + 991 | StackLowerThanAddress(&dummy, &result); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +./src/test/gtest/src/gtest-death-test.cc:983:6: note: by argument 1 of type 'const void*' to 'void testing::internal::StackLowerThanAddress(const void*, bool*)' declared here + 983 | void StackLowerThanAddress(const void* ptr, bool* result) { + | ^~~~~~~~~~~~~~~~~~~~~ +./src/test/gtest/src/gtest-death-test.cc:989:7: note: 'dummy' declared here + 989 | int dummy; + | ^~~~~ +./src/test/measure.cpp: In function 'std::vector norm(double, double)': +./src/test/measure.cpp:162:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 162 | for (int i=0; i < myrand.size(); ++i){ + | ~~^~~~~~~~~~~~~~~ ./src/test/fit.cpp: In member function 'virtual void fitlib_test_monoexponential_Test::TestBody()': ./src/test/fit.cpp:224:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 224 | for (int n = 0; n < data.size(); ++n) { @@ -4018,21 +4049,6 @@ ./src/test/fit.cpp:910:12: warning: unused variable 'chisqr' [-Wunused-variable] 910 | double chisqr = stfnum::lmFit(data, dt, funcLib[12], opts, | ^~~~~~ -./src/test/measure.cpp: In function 'std::vector norm(double, double)': -./src/test/measure.cpp:162:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 162 | for (int i=0; i < myrand.size(); ++i){ - | ~~^~~~~~~~~~~~~~~ -In file included from ./src/test/gtest/src/gtest-all.cc:43: -./src/test/gtest/src/gtest-death-test.cc: In function 'bool testing::internal::StackGrowsDown()': -./src/test/gtest/src/gtest-death-test.cc:991:24: warning: 'dummy' may be used uninitialized [-Wmaybe-uninitialized] - 991 | StackLowerThanAddress(&dummy, &result); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -./src/test/gtest/src/gtest-death-test.cc:983:6: note: by argument 1 of type 'const void*' to 'void testing::internal::StackLowerThanAddress(const void*, bool*)' declared here - 983 | void StackLowerThanAddress(const void* ptr, bool* result) { - | ^~~~~~~~~~~~~~~~~~~~~ -./src/test/gtest/src/gtest-death-test.cc:989:7: note: 'dummy' declared here - 989 | int dummy; - | ^~~~~ CXXLD stimfittest make[3]: Leaving directory '/build/stimfit-0.16.0' /usr/bin/make check-TESTS @@ -4062,14 +4078,14 @@ make[3]: Entering directory '/build/stimfit-0.16.0/src/libbiosiglite' make[4]: Entering directory '/build/stimfit-0.16.0/src/libbiosiglite' make[4]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' /bin/bash ../../libtool --mode=install /usr/bin/install -c libbiosiglite.la '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' libtool: install: /usr/bin/install -c .libs/libbiosiglite.so /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libbiosiglite.so libtool: install: /usr/bin/install -c .libs/libbiosiglite.lai /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libbiosiglite.la libtool: install: /usr/bin/install -c .libs/libbiosiglite.a /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libbiosiglite.a libtool: install: chmod 644 /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libbiosiglite.a libtool: install: ranlib /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libbiosiglite.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit @@ -4094,14 +4110,14 @@ make[3]: Entering directory '/build/stimfit-0.16.0/src/libstfio' make[4]: Entering directory '/build/stimfit-0.16.0/src/libstfio' make[4]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' /bin/bash ../../libtool --mode=install /usr/bin/install -c libstfio.la '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' libtool: install: /usr/bin/install -c .libs/libstfio.so /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfio.so libtool: install: /usr/bin/install -c .libs/libstfio.lai /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfio.la libtool: install: /usr/bin/install -c .libs/libstfio.a /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfio.a libtool: install: chmod 644 /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfio.a libtool: install: ranlib /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfio.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit @@ -4126,14 +4142,14 @@ make[3]: Entering directory '/build/stimfit-0.16.0/src/libstfnum' make[4]: Entering directory '/build/stimfit-0.16.0/src/libstfnum' make[4]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' /bin/bash ../../libtool --mode=install /usr/bin/install -c libstfnum.la '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' libtool: install: /usr/bin/install -c .libs/libstfnum.so /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfnum.so libtool: install: /usr/bin/install -c .libs/libstfnum.lai /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfnum.la libtool: install: /usr/bin/install -c .libs/libstfnum.a /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfnum.a libtool: install: chmod 644 /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfnum.a libtool: install: ranlib /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstfnum.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit @@ -4158,7 +4174,7 @@ make[3]: Entering directory '/build/stimfit-0.16.0/src/stimfit' make[4]: Entering directory '/build/stimfit-0.16.0/src/stimfit' make[4]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' /bin/bash ../../libtool --mode=install /usr/bin/install -c libstimfit.la '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' libtool: warning: relinking 'libstimfit.la' libtool: install: (cd /build/stimfit-0.16.0/src/stimfit; /bin/bash "/build/stimfit-0.16.0/libtool" --silent --tag CXX --mode=relink g++ -O2 -g -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -fPIC -g -O2 -ffile-prefix-map=/build/stimfit-0.16.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -L/usr/lib/i386-linux-gnu -lpython3.11 -Wl,-rpath,/usr/lib/stimfit -avoid-version -Wl,-z,relro -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl -o libstimfit.la -rpath /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit libstimfit_la-stf.lo libstimfit_la-app.lo libstimfit_la-unopt.lo libstimfit_la-doc.lo libstimfit_la-copygrid.lo libstimfit_la-graph.lo libstimfit_la-printout.lo libstimfit_la-parentframe.lo libstimfit_la-childframe.lo libstimfit_la-view.lo libstimfit_la-table.lo libstimfit_la-zoom.lo libstimfit_la-convertdlg.lo libstimfit_la-cursorsdlg.lo libstimfit_la-eventdlg.lo libstimfit_la-fitseldlg.lo libstimfit_la-smalldlgs.lo libstimfit_la-usrdlg.lo -L/usr/lib/i386-linux-gnu -pthread -lwx_baseu-3.2 -lwx_gtk3u_core-3.2 -lwx_gtk3u_aui-3.2 -lwx_baseu_net-3.2 ../libstfio/libstfio.la ../libstfnum/libstfnum.la ../libbiosiglite/libbiosiglite.la ) @@ -4167,7 +4183,7 @@ libtool: install: /usr/bin/install -c .libs/libstimfit.a /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstimfit.a libtool: install: chmod 644 /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstimfit.a libtool: install: ranlib /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libstimfit.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit @@ -4192,7 +4208,7 @@ make[3]: Entering directory '/build/stimfit-0.16.0/src/stimfit/py' make[4]: Entering directory '/build/stimfit-0.16.0/src/stimfit/py' make[4]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' /bin/bash ../../../libtool --mode=install /usr/bin/install -c libpystf.la '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' libtool: warning: relinking 'libpystf.la' libtool: install: (cd /build/stimfit-0.16.0/src/stimfit/py; /bin/bash "/build/stimfit-0.16.0/libtool" --silent --tag CXX --mode=relink g++ -O2 -g -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -fPIC -g -O2 -ffile-prefix-map=/build/stimfit-0.16.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -L/usr/lib/i386-linux-gnu -lpython3.11 -Wl,-rpath,/usr/lib/stimfit -avoid-version -lcholmod -Wl,-z,relro -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl -o libpystf.la -rpath /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit libpystf_la-pystf.lo libpystf_la-pystf_wrap.lo ../libstimfit.la ../../libstfio/libstfio.la -L/usr/lib/i386-linux-gnu -pthread -lwx_baseu-3.2 -lwx_gtk3u_core-3.2 -lwx_gtk3u_aui-3.2 -lwx_baseu_net-3.2 ../../libbiosiglite/libbiosiglite.la ) @@ -4201,7 +4217,7 @@ libtool: install: /usr/bin/install -c .libs/libpystf.a /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libpystf.a libtool: install: chmod 644 /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libpystf.a libtool: install: ranlib /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit/libpystf.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit @@ -4255,7 +4271,7 @@ make[2]: Entering directory '/build/stimfit-0.16.0' make[3]: Entering directory '/build/stimfit-0.16.0' make[3]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/bin' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c stimfit '/build/stimfit-0.16.0/debian/tmp/usr/bin' libtool: warning: './src/stimfit/libstimfit.la' has not been installed in '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' libtool: warning: './src/libstfio/libstfio.la' has not been installed in '/build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit' @@ -4265,7 +4281,7 @@ /usr/bin/make install-exec-hook make[4]: Entering directory '/build/stimfit-0.16.0' /bin/bash ./libtool --finish /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.16.0/debian/tmp/usr/lib/stimfit @@ -4314,7 +4330,7 @@ PYTHON=/usr/bin/python3.11 PYTHON_VERSION=3.11 ./configure --enable-module --enable-debian --with-biosiglite --prefix=/build/stimfit-0.16.0/debian/tmp/usr --with-wx-config="wx-config --toolkit=gtk3" checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes -checking for a race-free mkdir -p... /bin/mkdir -p +checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes @@ -4332,21 +4348,21 @@ checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... gcc3 -checking build system type... i686-pc-linux-gnu -checking host system type... i686-pc-linux-gnu +checking build system type... x86_64-pc-linux-gnux32 +checking host system type... x86_64-pc-linux-gnux32 checking how to print strings... printf -checking for a sed that does not truncate output... /bin/sed -checking for grep that handles long lines and -e... /bin/grep -checking for egrep... /bin/grep -E -checking for fgrep... /bin/grep -F +checking for a sed that does not truncate output... /usr/bin/sed +checking for grep that handles long lines and -e... /usr/bin/grep +checking for egrep... /usr/bin/grep -E +checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 -checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop -checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop +checking how to convert x86_64-pc-linux-gnux32 file names to x86_64-pc-linux-gnux32 format... func_convert_file_noop +checking how to convert x86_64-pc-linux-gnux32 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump @@ -4359,8 +4375,8 @@ checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no -checking for a working dd... /bin/dd -checking how to truncate binary pipes... /bin/dd bs=4096 count=1 +checking for a working dd... /usr/bin/dd +checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes @@ -4380,7 +4396,7 @@ checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes -checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes +checking whether the gcc linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate @@ -4403,15 +4419,15 @@ checking for g++ option to enable C++11 features... none needed checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E -checking for ld used by g++... /usr/bin/ld -checking if the linker (/usr/bin/ld) is GNU ld... yes -checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes +checking for ld used by g++... /usr/bin/ld -m elf_i386 +checking if the linker (/usr/bin/ld -m elf_i386) is GNU ld... yes +checking whether the g++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes -checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes +checking whether the g++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for kernel... linux or similar @@ -4497,6 +4513,12 @@ make[4]: Entering directory '/build/stimfit-0.16.0/src/pystfio' /usr/bin/swig -c++ -python -o ../../src/pystfio/pystfio_wrap.cxx ../../src/pystfio/pystfio.i CXX libpystfio_la-pystfio.lo +../../src/pystfio/pystfio.i:391: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. +../../src/pystfio/pystfio.i:391: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. +../../src/pystfio/pystfio.i:391: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. +cat ../../src/stimfit/py/gccwarn ../../src/pystfio/pystfio_wrap.cxx > ../../src/pystfio/pystfio_wrap_tmp.cxx +mv ../../src/pystfio/pystfio_wrap_tmp.cxx ../../src/pystfio/pystfio_wrap.cxx + CXX libpystfio_la-pystfio_wrap.lo In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, @@ -4505,12 +4527,6 @@ /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ -../../src/pystfio/pystfio.i:391: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. -../../src/pystfio/pystfio.i:391: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. -../../src/pystfio/pystfio.i:391: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. -cat ../../src/stimfit/py/gccwarn ../../src/pystfio/pystfio_wrap.cxx > ../../src/pystfio/pystfio_wrap_tmp.cxx -mv ../../src/pystfio/pystfio_wrap_tmp.cxx ../../src/pystfio/pystfio_wrap.cxx - CXX libpystfio_la-pystfio_wrap.lo In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, @@ -4543,9 +4559,9 @@ Making install in libbiosiglite make[3]: Entering directory '/build/stimfit-0.16.0/src/libbiosiglite' make[4]: Entering directory '/build/stimfit-0.16.0/src/libbiosiglite' -make[4]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' /bin/bash ../../libtool --mode=install /usr/bin/install -c libbiosiglite.la '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' +make[4]: Nothing to be done for 'install-data-am'. libtool: install: /usr/bin/install -c .libs/libbiosiglite.so /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libbiosiglite.so libtool: install: /usr/bin/install -c .libs/libbiosiglite.lai /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libbiosiglite.la libtool: install: /usr/bin/install -c .libs/libbiosiglite.a /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libbiosiglite.a @@ -4558,7 +4574,7 @@ make[3]: Entering directory '/build/stimfit-0.16.0/src/libstfio' make[4]: Entering directory '/build/stimfit-0.16.0/src/libstfio' make[4]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' /bin/bash ../../libtool --mode=install /usr/bin/install -c libstfio.la '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' libtool: install: /usr/bin/install -c .libs/libstfio.so /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libstfio.so libtool: install: /usr/bin/install -c .libs/libstfio.lai /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libstfio.la @@ -4572,7 +4588,7 @@ make[3]: Entering directory '/build/stimfit-0.16.0/src/libstfnum' make[4]: Entering directory '/build/stimfit-0.16.0/src/libstfnum' make[4]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' /bin/bash ../../libtool --mode=install /usr/bin/install -c libstfnum.la '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' libtool: install: /usr/bin/install -c .libs/libstfnum.so /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libstfnum.so libtool: install: /usr/bin/install -c .libs/libstfnum.lai /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libstfnum.la @@ -4586,7 +4602,7 @@ make[3]: Entering directory '/build/stimfit-0.16.0/src/pystfio' make[4]: Entering directory '/build/stimfit-0.16.0/src/pystfio' make[4]: Nothing to be done for 'install-data-am'. - /bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' + /usr/bin/mkdir -p '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' /bin/bash ../../libtool --mode=install /usr/bin/install -c libpystfio.la '/build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio' libtool: warning: relinking 'libpystfio.la' libtool: install: (cd /build/stimfit-0.16.0/src/pystfio; /bin/bash "/build/stimfit-0.16.0/libtool" --silent --tag CXX --mode=relink g++ -O2 -g -fPIC -g -O2 -ffile-prefix-map=/build/stimfit-0.16.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -L/usr/lib/i386-linux-gnu -lpython3.11 -avoid-version -Wl,-z,relro -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl -o libpystfio.la -rpath /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio libpystfio_la-pystfio.lo libpystfio_la-pystfio_wrap.lo ./../libstfio/libstfio.la ./../libstfnum/libstfnum.la ./../libbiosiglite/libbiosiglite.la ) @@ -4595,7 +4611,7 @@ libtool: install: /usr/bin/install -c .libs/libpystfio.a /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libpystfio.a libtool: install: chmod 644 /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libpystfio.a libtool: install: ranlib /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio/libpystfio.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.16.0/debian/tmp/usr/lib/python3.11/site-packages/stfio @@ -4666,12 +4682,12 @@ dh_testroot dh_installchangelogs -X./ChangeLog dh_installchangelogs: warning: Compatibility levels before 10 are deprecated (level 9 in use) - install -m0755 -d debian/stimfit/usr/share/doc/stimfit - install -p -m0644 debian/.debhelper/generated/stimfit/dh_installchangelogs.dch.trimmed debian/stimfit/usr/share/doc/stimfit/changelog.Debian - install -m0755 -d debian/python3-stfio/usr/share/doc/python3-stfio - install -p -m0644 debian/.debhelper/generated/python3-stfio/dh_installchangelogs.dch.trimmed debian/python3-stfio/usr/share/doc/python3-stfio/changelog.Debian install -m0755 -d debian/stimfit-dbg/usr/share/doc/stimfit-dbg install -p -m0644 debian/.debhelper/generated/stimfit-dbg/dh_installchangelogs.dch.trimmed debian/stimfit-dbg/usr/share/doc/stimfit-dbg/changelog.Debian + install -m0755 -d debian/python3-stfio/usr/share/doc/python3-stfio + install -p -m0644 debian/.debhelper/generated/python3-stfio/dh_installchangelogs.dch.trimmed debian/python3-stfio/usr/share/doc/python3-stfio/changelog.Debian + install -m0755 -d debian/stimfit/usr/share/doc/stimfit + install -p -m0644 debian/.debhelper/generated/stimfit/dh_installchangelogs.dch.trimmed debian/stimfit/usr/share/doc/stimfit/changelog.Debian dh_installdocs dh_installdocs: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/stimfit/usr/share/doc/stimfit @@ -4726,44 +4742,44 @@ dh_compress: warning: Compatibility levels before 10 are deprecated (level 9 in use) cd debian/stimfit dh_compress: warning: Compatibility levels before 10 are deprecated (level 9 in use) + cd debian/python3-stfio dh_compress: warning: Compatibility levels before 10 are deprecated (level 9 in use) cd debian/stimfit-dbg - cd debian/python3-stfio - chmod a-x usr/share/doc/python3-stfio/changelog.Debian chmod a-x usr/share/doc/stimfit-dbg/changelog.Debian - chmod a-x usr/share/doc/stimfit/changelog.Debian usr/share/man/man1/stimfit.1 - gzip -9nf usr/share/doc/python3-stfio/changelog.Debian gzip -9nf usr/share/doc/stimfit-dbg/changelog.Debian + chmod a-x usr/share/doc/stimfit/changelog.Debian usr/share/man/man1/stimfit.1 gzip -9nf usr/share/doc/stimfit/changelog.Debian usr/share/man/man1/stimfit.1 cd '/build/stimfit-0.16.0' cd '/build/stimfit-0.16.0' + chmod a-x usr/share/doc/python3-stfio/changelog.Debian + gzip -9nf usr/share/doc/python3-stfio/changelog.Debian cd '/build/stimfit-0.16.0' dh_strip --dbg-package=stimfit-dbg dh_strip: warning: Compatibility levels before 10 are deprecated (level 9 in use) - install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/6f - objcopy --only-keep-debug --compress-debug-sections debian/stimfit/usr/lib/stimfit/libbiosiglite.so debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug - chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug - chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/stimfit/usr/lib/stimfit/libbiosiglite.so - objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug debian/stimfit/usr/lib/stimfit/libbiosiglite.so install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/88 objcopy --only-keep-debug --compress-debug-sections debian/stimfit/usr/lib/stimfit/libstimfit.so debian/stimfit-dbg/usr/lib/debug/.build-id/88/c54637ac9dd71f7248708a58d2ad99ee4357d0.debug chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/88/c54637ac9dd71f7248708a58d2ad99ee4357d0.debug chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/88/c54637ac9dd71f7248708a58d2ad99ee4357d0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/stimfit/usr/lib/stimfit/libstimfit.so objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/88/c54637ac9dd71f7248708a58d2ad99ee4357d0.debug debian/stimfit/usr/lib/stimfit/libstimfit.so - install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/5e - objcopy --only-keep-debug --compress-debug-sections debian/stimfit/usr/lib/stimfit/libstfio.so debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug - chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug - chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/stimfit/usr/lib/stimfit/libstfio.so - objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug debian/stimfit/usr/lib/stimfit/libstfio.so install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/stimfit/usr/lib/stimfit/libpystf.so debian/stimfit-dbg/usr/lib/debug/.build-id/96/3c4592ca00ea9fd454c717389bc236fb8dcc86.debug chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/96/3c4592ca00ea9fd454c717389bc236fb8dcc86.debug chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/96/3c4592ca00ea9fd454c717389bc236fb8dcc86.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/stimfit/usr/lib/stimfit/libpystf.so objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/96/3c4592ca00ea9fd454c717389bc236fb8dcc86.debug debian/stimfit/usr/lib/stimfit/libpystf.so + install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/5e + objcopy --only-keep-debug --compress-debug-sections debian/stimfit/usr/lib/stimfit/libstfio.so debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug + chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug + chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/stimfit/usr/lib/stimfit/libstfio.so + objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug debian/stimfit/usr/lib/stimfit/libstfio.so + install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/6f + objcopy --only-keep-debug --compress-debug-sections debian/stimfit/usr/lib/stimfit/libbiosiglite.so debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug + chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug + chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/stimfit/usr/lib/stimfit/libbiosiglite.so + objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug debian/stimfit/usr/lib/stimfit/libbiosiglite.so install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/stimfit/usr/lib/stimfit/libstfnum.so debian/stimfit-dbg/usr/lib/debug/.build-id/26/72bd563d591d9538effe12e0c94c0134351847.debug chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/26/72bd563d591d9538effe12e0c94c0134351847.debug @@ -4776,11 +4792,6 @@ chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/eb/ee7b4dd1fd1855bb45945662bfce6176f8efdd.debug strip --remove-section=.comment --remove-section=.note debian/stimfit/usr/bin/stimfit objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/eb/ee7b4dd1fd1855bb45945662bfce6176f8efdd.debug debian/stimfit/usr/bin/stimfit - install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/6f - chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug - chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-stfio/usr/lib/python3.11/site-packages/stfio/libbiosiglite.so - objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug debian/python3-stfio/usr/lib/python3.11/site-packages/stfio/libbiosiglite.so install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/5e chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/5e/2fd4a595506650788976599be56792d26e3a13.debug @@ -4792,6 +4803,11 @@ chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/93/96c86f07537b20376a412ec8d2b0de484ea519.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-stfio/usr/lib/python3.11/site-packages/stfio/_stfio.so objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/93/96c86f07537b20376a412ec8d2b0de484ea519.debug debian/python3-stfio/usr/lib/python3.11/site-packages/stfio/_stfio.so + install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/6f + chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug + chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-stfio/usr/lib/python3.11/site-packages/stfio/libbiosiglite.so + objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/6f/adf49fb17b116cc402a44f4d7e856d4e2d98ee.debug debian/python3-stfio/usr/lib/python3.11/site-packages/stfio/libbiosiglite.so install -m0755 -d debian/stimfit-dbg/usr/lib/debug/.build-id/26 chmod 0644 -- debian/stimfit-dbg/usr/lib/debug/.build-id/26/72bd563d591d9538effe12e0c94c0134351847.debug chown 0:0 -- debian/stimfit-dbg/usr/lib/debug/.build-id/26/72bd563d591d9538effe12e0c94c0134351847.debug @@ -4799,26 +4815,26 @@ objcopy --add-gnu-debuglink debian/stimfit-dbg/usr/lib/debug/.build-id/26/72bd563d591d9538effe12e0c94c0134351847.debug debian/python3-stfio/usr/lib/python3.11/site-packages/stfio/libstfnum.so install -m0755 -d debian/.debhelper/stimfit-dbg dh_fixperms - find debian/stimfit -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/stimfit-dbg -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-stfio -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 + find debian/stimfit -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-stfio ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/stimfit-dbg ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/stimfit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/stimfit-dbg ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-stfio/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-stfio/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/stimfit-dbg/usr/share/doc -type f -a -true -a ! -regex 'debian/stimfit-dbg/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/stimfit/usr/share/doc -type f -a -true -a ! -regex 'debian/stimfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-stfio/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/stimfit-dbg/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/stimfit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/stimfit-dbg/usr/share/doc -type f -a -true -a ! -regex 'debian/stimfit-dbg/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/stimfit/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/stimfit-dbg/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-stfio -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/stimfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/stimfit-dbg -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/stimfit/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-stfio/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/stimfit-dbg/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/stimfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/stimfit/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/stimfit/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/stimfit-dbg/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_icons [ -x /usr/bin/dh_python3 ] && dh_python3 -V3.11 --no-ext-rename || : D: dh_python3 dh_python3:179: version: 5.20230130 @@ -4829,14 +4845,14 @@ D: dh_python3 debhelper:183: source=stimfit, binary packages=['stimfit', 'python3-stfio'] D: dh_python3 dh_python3:204: processing package stimfit... D: dh_python3 tools:102: fix_shebang (debian/stimfit/usr/bin/stimfit): cannot parse binary file -D: dh_python3 fs:400: package stimfit details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {'/usr/lib/stimfit': {'ext_no_version': {'debian/stimfit/usr/lib/stimfit/_stf.so', 'debian/stimfit/usr/lib/stimfit/libpystf.so', 'debian/stimfit/usr/lib/stimfit/libbiosiglite.so', 'debian/stimfit/usr/lib/stimfit/libstimfit.so', 'debian/stimfit/usr/lib/stimfit/libstfnum.so', 'debian/stimfit/usr/lib/stimfit/libstfio.so'}, 'compile': True}}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} +D: dh_python3 fs:400: package stimfit details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {'/usr/lib/stimfit': {'ext_no_version': {'debian/stimfit/usr/lib/stimfit/libpystf.so', 'debian/stimfit/usr/lib/stimfit/libbiosiglite.so', 'debian/stimfit/usr/lib/stimfit/_stf.so', 'debian/stimfit/usr/lib/stimfit/libstfio.so', 'debian/stimfit/usr/lib/stimfit/libstfnum.so', 'debian/stimfit/usr/lib/stimfit/libstimfit.so'}, 'compile': True}}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package stimfit D: dh_python3 depends:281: D={'python3 (>= 3.11~)', 'python3 (<< 3.12)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[('/usr/lib/stimfit', '-V 3.11')] D: dh_python3 dh_python3:204: processing package python3-stfio... D: dh_python3 fs:52: moving files from debian/python3-stfio/usr/lib/python3.11/site-packages to debian/python3-stfio/usr/lib/python3/dist-packages/ D: dh_python3 fs:400: package python3-stfio details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-stfio -D: dh_python3 depends:281: D={'python3 (>= 3~)', 'python3.11', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:281: D={'python3.11', 'python3 (>= 3~)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] [ -x /usr/bin/dh_numpy ] && dh_numpy || : dh_makeshlibs dh_makeshlibs: warning: Compatibility levels before 10 are deprecated (level 9 in use) @@ -4848,34 +4864,34 @@ dh_shlibdeps: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_shlibdeps: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -m0755 -d debian/python3-stfio/DEBIAN - dpkg-shlibdeps -Tdebian/python3-stfio.substvars debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libbiosiglite.so debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libstfio.so debian/python3-stfio/usr/lib/python3/dist-packages/stfio/_stfio.so debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libstfnum.so + dpkg-shlibdeps -Tdebian/python3-stfio.substvars debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libstfio.so debian/python3-stfio/usr/lib/python3/dist-packages/stfio/_stfio.so debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libbiosiglite.so debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libstfnum.so install -m0755 -d debian/stimfit/DEBIAN - dpkg-shlibdeps -Tdebian/stimfit.substvars debian/stimfit/usr/bin/stimfit debian/stimfit/usr/lib/stimfit/libbiosiglite.so debian/stimfit/usr/lib/stimfit/libstimfit.so debian/stimfit/usr/lib/stimfit/libstfio.so debian/stimfit/usr/lib/stimfit/libpystf.so debian/stimfit/usr/lib/stimfit/libstfnum.so -dpkg-shlibdeps: warning: debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libstfio.so contains an unresolvable reference to symbol biosig_get_application_specific_information: it's probably a plugin -dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libstfio.so contains an unresolvable reference to symbol biosig_get_channel: it's probably a plugin -dpkg-shlibdeps: warning: 50 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: 50 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libstfnum.so contains an unresolvable reference to symbol _ZN5stfio12vec_scal_divERKSt6vectorIdSaIdEEd: it's probably a plugin + dpkg-shlibdeps -Tdebian/stimfit.substvars debian/stimfit/usr/bin/stimfit debian/stimfit/usr/lib/stimfit/libstimfit.so debian/stimfit/usr/lib/stimfit/libpystf.so debian/stimfit/usr/lib/stimfit/libstfio.so debian/stimfit/usr/lib/stimfit/libbiosiglite.so debian/stimfit/usr/lib/stimfit/libstfnum.so +dpkg-shlibdeps: warning: can't extract name and version from library name 'libstimfit.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libstimfit.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' +dpkg-shlibdeps: warning: debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libstfnum.so contains an unresolvable reference to symbol _ZN5stfio12vec_scal_mulERKSt6vectorIdSaIdEEd: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libstfio.so contains an unresolvable reference to symbol biosig_channel_set_physdimcode: it's probably a plugin +dpkg-shlibdeps: warning: 50 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' -dpkg-shlibdeps: warning: debian/python3-stfio/usr/lib/python3/dist-packages/stfio/libstfnum.so contains an unresolvable reference to symbol _ZN5stfio12vec_scal_divERKSt6vectorIdSaIdEEd: it's probably a plugin -dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-stfio/usr/lib/python3/dist-packages/stfio/_stfio.so was not linked against libbiosiglite.so (it uses none of the library's symbols) -dpkg-shlibdeps: warning: can't extract name and version from library name 'libstimfit.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libstimfit.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' -dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libpystf.so contains an unresolvable reference to symbol _ZN6stfnum5Table2atEjj: it's probably a plugin +dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libpystf.so contains an unresolvable reference to symbol _ZN6stfnum5TableC1ERKSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdSt4lessIS7_ESaISt4pairIKS7_dEEE: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libstfnum.so contains an unresolvable reference to symbol _ZN5stfio12vec_scal_divERKSt6vectorIdSaIdEEd: it's probably a plugin +dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' +dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libstfio.so contains an unresolvable reference to symbol biosig_get_channel: it's probably a plugin +dpkg-shlibdeps: warning: 50 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/stimfit/usr/lib/stimfit/libstimfit.so was not linked against libbiosiglite.so (it uses none of the library's symbols) dh_installdeb dh_installdeb: warning: Compatibility levels before 10 are deprecated (level 9 in use) @@ -4903,32 +4919,32 @@ chmod 0755 -- debian/python3-stfio/DEBIAN/prerm chown 0:0 -- debian/python3-stfio/DEBIAN/prerm dh_gencontrol - install -m0755 -d debian/stimfit-dbg/DEBIAN - echo misc:Depends= >> debian/stimfit-dbg.substvars - echo misc:Pre-Depends= >> debian/stimfit-dbg.substvars - dpkg-gencontrol -pstimfit-dbg -ldebian/changelog -Tdebian/stimfit-dbg.substvars -Pdebian/stimfit-dbg "-DBuild-Ids=2672bd563d591d9538effe12e0c94c0134351847 5e2fd4a595506650788976599be56792d26e3a13 6fadf49fb17b116cc402a44f4d7e856d4e2d98ee 88c54637ac9dd71f7248708a58d2ad99ee4357d0 9396c86f07537b20376a412ec8d2b0de484ea519 963c4592ca00ea9fd454c717389bc236fb8dcc86 ebee7b4dd1fd1855bb45945662bfce6176f8efdd" - install -m0755 -d debian/python3-stfio/DEBIAN - echo misc:Depends= >> debian/python3-stfio.substvars - echo misc:Pre-Depends= >> debian/python3-stfio.substvars - dpkg-gencontrol -ppython3-stfio -ldebian/changelog -Tdebian/python3-stfio.substvars -Pdebian/python3-stfio install -m0755 -d debian/stimfit/DEBIAN echo misc:Depends= >> debian/stimfit.substvars echo misc:Pre-Depends= >> debian/stimfit.substvars dpkg-gencontrol -pstimfit -ldebian/changelog -Tdebian/stimfit.substvars -Pdebian/stimfit + install -m0755 -d debian/python3-stfio/DEBIAN + echo misc:Depends= >> debian/python3-stfio.substvars + echo misc:Pre-Depends= >> debian/python3-stfio.substvars + dpkg-gencontrol -ppython3-stfio -ldebian/changelog -Tdebian/python3-stfio.substvars -Pdebian/python3-stfio + install -m0755 -d debian/stimfit-dbg/DEBIAN + echo misc:Depends= >> debian/stimfit-dbg.substvars + echo misc:Pre-Depends= >> debian/stimfit-dbg.substvars + dpkg-gencontrol -pstimfit-dbg -ldebian/changelog -Tdebian/stimfit-dbg.substvars -Pdebian/stimfit-dbg "-DBuild-Ids=2672bd563d591d9538effe12e0c94c0134351847 5e2fd4a595506650788976599be56792d26e3a13 6fadf49fb17b116cc402a44f4d7e856d4e2d98ee 88c54637ac9dd71f7248708a58d2ad99ee4357d0 9396c86f07537b20376a412ec8d2b0de484ea519 963c4592ca00ea9fd454c717389bc236fb8dcc86 ebee7b4dd1fd1855bb45945662bfce6176f8efdd" dpkg-gencontrol: warning: Provides field of package python3-stfio: substitution variable ${python3:Provides} used, but is not defined - chmod 0644 -- debian/stimfit-dbg/DEBIAN/control - chown 0:0 -- debian/stimfit-dbg/DEBIAN/control chmod 0644 -- debian/stimfit/DEBIAN/control chown 0:0 -- debian/stimfit/DEBIAN/control chmod 0644 -- debian/python3-stfio/DEBIAN/control chown 0:0 -- debian/python3-stfio/DEBIAN/control + chmod 0644 -- debian/stimfit-dbg/DEBIAN/control + chown 0:0 -- debian/stimfit-dbg/DEBIAN/control dh_md5sums + install -m0755 -d debian/stimfit-dbg/DEBIAN install -m0755 -d debian/stimfit/DEBIAN install -m0755 -d debian/python3-stfio/DEBIAN - install -m0755 -d debian/stimfit-dbg/DEBIAN - cd debian/stimfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/python3-stfio >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/stimfit-dbg >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/python3-stfio >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/stimfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-stfio/DEBIAN/md5sums chown 0:0 -- debian/python3-stfio/DEBIAN/md5sums chmod 0644 -- debian/stimfit/DEBIAN/md5sums @@ -4936,12 +4952,12 @@ chmod 0644 -- debian/stimfit-dbg/DEBIAN/md5sums chown 0:0 -- debian/stimfit-dbg/DEBIAN/md5sums dh_builddeb + dpkg-deb --build debian/python3-stfio .. dpkg-deb --build debian/stimfit .. +dpkg-deb: building package 'python3-stfio' in '../python3-stfio_0.16.0-1.2_i386.deb'. dpkg-deb --build debian/stimfit-dbg .. - dpkg-deb --build debian/python3-stfio .. dpkg-deb: building package 'stimfit' in '../stimfit_0.16.0-1.2_i386.deb'. dpkg-deb: building package 'stimfit-dbg' in '../stimfit-dbg_0.16.0-1.2_i386.deb'. -dpkg-deb: building package 'python3-stfio' in '../python3-stfio_0.16.0-1.2_i386.deb'. dpkg-genbuildinfo --build=binary -O../stimfit_0.16.0-1.2_i386.buildinfo dpkg-genchanges --build=binary -O../stimfit_0.16.0-1.2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4949,12 +4965,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/39896/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/39896/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/10831 and its subdirectories -I: Current time: Thu Apr 13 13:35:01 -12 2023 -I: pbuilder-time-stamp: 1681436101 +I: removing directory /srv/workspace/pbuilder/39896 and its subdirectories +I: Current time: Thu May 16 22:07:34 +14 2024 +I: pbuilder-time-stamp: 1715846854