Diff of the two buildlogs: -- --- b1/build.log 2023-04-13 10:34:55.741861380 +0000 +++ b2/build.log 2023-04-13 11:03:29.021783603 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 15 04:46:05 -12 2024 -I: pbuilder-time-stamp: 1715791565 +I: Current time: Fri Apr 14 00:35:01 +14 2023 +I: pbuilder-time-stamp: 1681382101 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./toppic_1.5.3+dfsg1.orig.tar.gz] I: copying [./toppic_1.5.3+dfsg1-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Sun Oct 30 10:51:18 2022 -12 +gpgv: Signature made Mon Oct 31 12:51:18 2022 +14 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./toppic_1.5.3+dfsg1-1.dsc: no acceptable signature found @@ -31,137 +31,146 @@ dpkg-source: info: applying 0004-Patch-to-use-libpwizlite-and-libhts-from-the-system.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/104745/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18044/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18044/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18044/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' - INVOCATION_ID='9c49370d7ac142e7886fd97e5b7778ba' + INVOCATION_ID='7387812381754c2d89e33c695c7c5d8a' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='de_CH:de' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='104745' + PPID='18044' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dL2AYtoc/pbuilderrc_Kiug --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dL2AYtoc/b1 --logfile b1/build.log toppic_1.5.3+dfsg1-1.dsc' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dL2AYtoc/pbuilderrc_WVHY --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dL2AYtoc/b2 --logfile b2/build.log --extrapackages usrmerge toppic_1.5.3+dfsg1-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + http_proxy='http://78.137.99.97:3128' I: uname -a - Linux ionos16-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6040 - -rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown - -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp - -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash - -rwxr-xr-x 1 root root 137160 Sep 20 2022 date - -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd - -rwxr-xr-x 1 root root 108940 Sep 20 2022 df - -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir - -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 34664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln - -rwxr-xr-x 1 root root 55600 Mar 22 2023 login - -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls - -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 63016 Mar 22 2023 more - -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount - -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 18 2022 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash - -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm - -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty - -rwsr-xr-x 1 root root 83492 Mar 22 2023 su - -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync - -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar - -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch - -rwxr-xr-x 1 root root 34664 Sep 20 2022 true - -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount - -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/104745/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1408088 Feb 13 10:21 bash + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown + -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp + -rwxr-xr-x 1 root root 136916 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 137160 Sep 21 2022 date + -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd + -rwxr-xr-x 1 root root 108940 Sep 21 2022 df + -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir + -rwxr-xr-x 1 root root 87760 Mar 24 00:20 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 34664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 84272 Mar 24 00:20 findmnt + -rwsr-xr-x 1 root root 30240 Mar 23 22:38 fusermount + -rwxr-xr-x 1 root root 218680 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 21916 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln + -rwxr-xr-x 1 root root 55600 Mar 24 01:43 login + -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls + -rwxr-xr-x 1 root root 214568 Mar 24 00:20 lsblk + -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 63016 Mar 24 00:20 more + -rwsr-xr-x 1 root root 58912 Mar 24 00:20 mount + -rwxr-xr-x 1 root root 13856 Mar 24 00:20 mountpoint + -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 19 07:00 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 10:21 rbash -> bash + -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm + -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 22308 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 133224 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 4 Jan 6 03:20 sh -> dash + -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty + -rwsr-xr-x 1 root root 83492 Mar 24 00:20 su + -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync + -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar + -rwxr-xr-x 1 root root 13860 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch + -rwxr-xr-x 1 root root 34664 Sep 21 2022 true + -rwxr-xr-x 1 root root 17892 Mar 23 22:38 ulockmgr_server + -rwsr-xr-x 1 root root 30236 Mar 24 00:20 umount + -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 71216 Mar 24 00:20 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/18044/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -483,7 +492,7 @@ Get: 236 http://deb.debian.org/debian bookworm/main i386 qt5-qmake i386 5.15.8+dfsg-3 [221 kB] Get: 237 http://deb.debian.org/debian bookworm/main i386 qtbase5-dev-tools i386 5.15.8+dfsg-3 [845 kB] Get: 238 http://deb.debian.org/debian bookworm/main i386 qtbase5-dev i386 5.15.8+dfsg-3 [1122 kB] -Fetched 157 MB in 4s (43.9 MB/s) +Fetched 157 MB in 5s (34.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) @@ -1457,8 +1466,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes +I: user script /srv/workspace/pbuilder/18044/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/18044/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes dpkg-buildpackage: info: source package toppic dpkg-buildpackage: info: source version 1.5.3+dfsg1-1 dpkg-buildpackage: info: source distribution unstable @@ -1553,7 +1573,7 @@ -- Build files have been written to: /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu make[1]: Leaving directory '/build/toppic-1.5.3+dfsg1' dh_auto_build -O--buildsystem=cmake - cd obj-i686-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j7 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/toppic-1.5.3+dfsg1 -B/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -1565,4393 +1585,4097 @@ make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake --color= -make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake --color= -make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend +make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake --color= +make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake --color= -make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/toppic_autogen.dir/DependInfo.cmake --color= -make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake --color= -make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmg_autogen.dir/DependInfo.cmake --color= -make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/depend -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake --color= -make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/depend -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake --color= -make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/depend -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmerge_autogen.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topconvert_autogen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/build make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/build make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/build +make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' 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release [ 1%] Automatic MOC and UIC for target topindex_gui -/usr/bin/cmake -E cmake_autogen /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenInfo.json release +[ 1%] Automatic MOC and UIC for target topfd_gui /usr/bin/cmake -E cmake_autogen /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenInfo.json release +/usr/bin/cmake -E cmake_autogen /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenInfo.json release /usr/bin/cmake -E cmake_autogen /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release -[ 1%] Automatic MOC and UIC for target topdiff_gui -/usr/bin/cmake -E cmake_autogen /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release -[ 1%] Automatic MOC and UIC for target topfd -/usr/bin/cmake -E cmake_autogen 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-E cmake_autogen /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release -/usr/bin/cmake -E cmake_autogen /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenInfo.json release -/usr/bin/cmake -E cmake_autogen /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenInfo.json release -AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topindex_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topmerge_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/moc_predefs.h", because it doesn't exist. +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topfd_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/toppic_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topfd_autogen/moc_predefs.h", because it doesn't exist. +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topindex_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topconvert_autogen/moc_predefs.h", because it doesn't exist. +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topdiff_autogen/moc_predefs.h", because it doesn't exist. +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/toppic_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-i686-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topmerge_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include -AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" +AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" +AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" +AutoGen: Parsing 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-AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: 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+AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" 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-AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" 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"SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topindex_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" +/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" +/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" +AutoUic: Generating "SRC:/obj-i686-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" +/usr/lib/qt5/bin/uic -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.ui +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" +AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" -AutoGen: Parsing 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"SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" +[ 1%] Built target topindex_autogen +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake --color= +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topfd_autogen/mocs_compilation.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topfd_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoUic: Generating "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" +/usr/lib/qt5/bin/uic -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h /build/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" +/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.hpp +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" +/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /build/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.hpp +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" +AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Writing the settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +make -f CMakeFiles/topmg_gui_autogen.dir/build.make 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Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" +make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" +AutoGen: Parsing 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"SRC:/src/search/graphalign/graph_align.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: 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"SRC:/src/stat/local/local_mng.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" +make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend +[ 1%] Automatic MOC and UIC for target topmg_gui +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +/usr/bin/cmake -E cmake_autogen 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+AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" 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"SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topmerge_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" +AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" +AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.cpp" +AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp" +AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" -AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/topmerge_autogen.dir/ParseCache.txt" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +[ 1%] Built target toppic_autogen AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Writing the settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.h" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.h" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" -/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /build/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.hpp -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" -/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.hpp -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoUic: Generating "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" -/usr/lib/qt5/bin/uic -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h /build/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/console/topconvert.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/console/topconvert_process.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing 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Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" +AutoGen: Parsing 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-AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/threadtopdiff.h" -/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp /build/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.h AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.h" -/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.h -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoUic: Generating "SRC:/obj-i686-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" -/usr/lib/qt5/bin/uic -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.ui -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" -AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.h" -AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.h" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topindex_autogen/mocs_compilation.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Writing the settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" -/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" -/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topmerge_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topdiff_autogen/mocs_compilation.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" +make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing 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+AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" -AutoGen: 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"SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" 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+AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" 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"SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing 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AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoUic: Generating "SRC:/obj-i686-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" -/usr/lib/qt5/bin/uic -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.ui -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" -AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" 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"SRC:/src/visual/anno_proteoform.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" -AutoGen: Parsing 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Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" +AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.h" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.h" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.h" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/toppic_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/gui/topmerge/topmerge_gui.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" @@ -5966,7 +5690,6 @@ AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" @@ -5974,313 +5697,517 @@ AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topdiff_autogen/mocs_compilation.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/toppic_autogen.dir/ParseCache.txt" -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/threadtoppic.h" -/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp /build/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.h" -/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h -AutoUic: Generating "SRC:/obj-i686-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" -/usr/lib/qt5/bin/uic -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h /build/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.ui -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Writing the settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" -[ 2%] Built target topfd_autogen -AutoUic: Generating "SRC:/obj-i686-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.ui" -/usr/lib/qt5/bin/uic -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h /build/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.ui +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Refreshing parse cache because it doesn't exist. +AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topconvert_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.25/Modules/CMakeCXXCompilerABI.cpp -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/threadtopmerge.h" /usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp /build/toppic-1.5.3+dfsg1/src/gui/topmerge/threadtopmerge.h +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoUic: Generating "SRC:/obj-i686-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.ui" +/usr/lib/qt5/bin/uic -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h /build/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.ui +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.h" /usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/12 -I/usr/include/i386-linux-gnu/c++/12 -I/usr/include/c++/12/backward -I/usr/lib/gcc/i686-linux-gnu/12/include -I/usr/local/include -I/usr/include/i386-linux-gnu -I/usr/include --include /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp /build/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.h -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" -AutoMoc: Generating "SRC:/obj-i686-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/threadtopmg.h" -/usr/lib/qt5/bin/moc -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +AutoMoc: Reading dependencies from "SRC:/obj-i686-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' [ 2%] Built target topindex_gui_autogen -make -f CMakeFiles/topindex_gui.dir/build.make CMakeFiles/topindex_gui.dir/depend -AutoMoc: Reading dependencies from "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" -AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/mocs_compilation.cpp" 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CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o.d -o 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CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o +make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o -MF CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o -c /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/mocs_compilation.cpp make -f CMakeFiles/topindex_gui.dir/build.make CMakeFiles/topindex_gui.dir/build -AutoRcc: Generating "SRC:/obj-i686-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/icon.qrc" -/usr/lib/qt5/bin/rcc -name icon -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp /build/toppic-1.5.3+dfsg1/src/gui/topdiff/icon.qrc -make[3]: Entering 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex.dir/src/console/topindex.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex.cpp.o -c /build/toppic-1.5.3+dfsg1/src/console/topindex.cpp [ 2%] Building CXX object 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CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -c /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -[ 2%] Building CXX object CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -c /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp -[ 2%] Automatic RCC for src/gui/topfd/icon.qrc -/usr/bin/cmake -E cmake_autorcc /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Info.json release -AutoRcc: Generating "SRC:/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/icon.qrc" -/usr/lib/qt5/bin/rcc -name icon -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp /build/toppic-1.5.3+dfsg1/src/gui/topfd/icon.qrc -AutoRcc: Writing settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Used.txt" -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topfd_gui.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/build +make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/build +[ 2%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic.cpp.o make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -[ 2%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/console/toppic.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic.cpp.o -c 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CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o -c /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/mocs_compilation.cpp +[ 2%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG 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from "SRC:/obj-i686-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt" +AutoMoc: Reading dependencies from "SRC:/obj-i686-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp.d" AutoGen: Writing the settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenUsed.txt" make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' [ 2%] Built target topmg_gui_autogen -make -f CMakeFiles/topmerge_gui.dir/build.make CMakeFiles/topmerge_gui.dir/depend -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -[ 2%] Automatic RCC for src/gui/topmerge/icon.qrc -/usr/bin/cmake -E cmake_autorcc /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutoRcc_icon_FNASZ5VCWY_Info.json release -[ 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"SRC:/obj-i686-linux-gnu/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/icon.qrc" -/usr/lib/qt5/bin/rcc -name icon -o /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp /build/toppic-1.5.3+dfsg1/src/gui/toppic/icon.qrc -AutoRcc: Writing settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutoRcc_icon_23BTPJIYMA_Used.txt" -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmerge_gui.dir/DependInfo.cmake --color= -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -c /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/mocs_compilation.cpp +[ 2%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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"SRC:/obj-i686-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp.d" +AutoMoc: Generating MOC compilation "SRC:/obj-i686-linux-gnu/toppic_gui_autogen/mocs_compilation.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-i686-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-i686-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenUsed.txt" make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make -f CMakeFiles/topmerge_gui.dir/build.make CMakeFiles/topmerge_gui.dir/build -make -f CMakeFiles/toppic_gui.dir/build.make CMakeFiles/toppic_gui.dir/build +[ 2%] Built target toppic_gui_autogen +make -f CMakeFiles/topdiff_gui.dir/build.make CMakeFiles/topdiff_gui.dir/depend make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +[ 2%] Automatic RCC for src/gui/topdiff/icon.qrc +/usr/bin/cmake -E cmake_autorcc 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/build/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp: In function 'int main(int, char**)': /build/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); @@ -6290,8 +6217,10 @@ /usr/include/i386-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ -[ 3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -c /build/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp +[ 3%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/topindexdialog.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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In function 'int main(int, char**)': /build/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); @@ -6301,1149 +6230,610 @@ /usr/include/i386-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ -[ 3%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex_b.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/vertex_b.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/vertex_b.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/vertex_b.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_b.cpp -[ 3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_util.cpp -[ 4%] Building CXX object CMakeFiles/topfd.dir/src/topfd/envcnn/env_cnn.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/envcnn/env_cnn.cpp.o -MF 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'int main(int, char**)': -/build/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] - 40 | QRect deskRect = desk->availableGeometry(); - | ~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, - from /build/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:18: -/usr/include/i386-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here - 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; - | ^~~~~~~~~~~~~~~~~ -[ 4%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/trunc_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 21%] Building CXX object CMakeFiles/topdiff.dir/src/common/xml/xml_dom_document.cpp.o +[ 11%] Building CXX object CMakeFiles/topmg.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex.dir/src/seq/alter.cpp.o -MF CMakeFiles/topindex.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/alter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter.cpp +[ 14%] Building CXX object CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topmerge.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/alter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter.cpp -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp -[ 24%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -[ 24%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 16%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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-O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 25%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o +[ 16%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 26%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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/build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 26%] Building CXX object CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -MF 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter.cpp -[ 29%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter.cpp /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -7452,30 +6842,68 @@ /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 29%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp -[ 30%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/residue.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/residue.cpp -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 18%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -7578,42 +6930,34 @@ /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 30%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o +[ 18%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 18%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -7622,24 +6966,10 @@ /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -7648,1765 +6978,2219 @@ /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 32%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp -[ 33%] Building CXX object CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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/build/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 34%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF 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"SRC:/obj-i686-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutoRcc_icon_OBJ2MOUSMQ_Used.txt" -cd /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1 /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles/topmg_gui.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -make -f CMakeFiles/topmg_gui.dir/build.make CMakeFiles/topmg_gui.dir/build -make[3]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -[ 37%] Building CXX object CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o -c /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp -[ 37%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 37%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_peak_pair.cpp.o -MF 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/toppic.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/toppic.dir/src/para/peak_tolerance.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp -[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 38%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp -[ 38%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 39%] Building CXX object 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 40%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore 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-I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 40%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 22%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 40%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 40%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp -[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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CXX object CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data_util.cpp -[ 40%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 40%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 40%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp -[ 40%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 40%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore 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-I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 40%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp -[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 40%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion.cpp -[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 40%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 23%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore 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-I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod.cpp -[ 40%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 40%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp -[ 40%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -[ 40%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 40%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o +[ 23%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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/build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 40%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o.d -o 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-mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -[ 40%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 24%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 24%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 24%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 25%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 25%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 25%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 40%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp -[ 40%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/prec_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp -/build/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp: In function 'int main(int, char**)': -/build/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] - 36 | QRect deskRect = desk->availableGeometry(); - | ~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, - from /build/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:18: -/usr/include/i386-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here - 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; - | ^~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o +[ 25%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 25%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 25%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp +[ 25%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 25%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ 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CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 40%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 41%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 41%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 41%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o +[ 26%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topindex.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topindex.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/mng/index_file_name.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp +[ 26%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp -[ 41%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -[ 42%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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/build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 26%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -MF 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 42%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o -[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 26%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include 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/build/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp +[ 26%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data_util.cpp +[ 26%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 26%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 26%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 42%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp -[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +[ 26%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp +[ 26%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +[ 26%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 26%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 26%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 26%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 43%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp -[ 43%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/real_env.cpp.o 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CXX object CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o +[ 26%] Building CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -MF 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -[ 45%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 45%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp -[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp -[ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 45%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 45%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o 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object CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -[ 45%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ptm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ptm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp -[ 45%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 45%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 45%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 26%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 46%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 46%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 46%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o +[ 26%] Building CXX object CMakeFiles/topfd.dir/src/common/base/base_data.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topfd.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 26%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse 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-isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 47%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -[ 47%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ptm_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ptm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp -[ 47%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o +[ 26%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 26%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +[ 26%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp -[ 47%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 47%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/savitzky_golay.cpp.o +[ 27%] Building CXX object CMakeFiles/topfd.dir/src/common/base/neutral_loss.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -[ 47%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 47%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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/build/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp -[ 47%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 47%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o -MF CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o -c /build/toppic-1.5.3+dfsg1/src/console/topmg_argument.cpp -[ 47%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp -[ 47%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -[ 48%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -[ 48%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 48%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp -[ 48%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp -[ 48%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 48%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/util/run_exe.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topindex_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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/build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp +[ 28%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ptm.cpp.o.d -o 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-O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp -[ 48%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 48%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 28%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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'/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -[ 49%] Built target topindex_gui -[ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp -[ 50%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp -[ 50%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp +[ 31%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/amino_acid.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 31%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o -c /build/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp +[ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 31%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp +[ 31%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 31%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/amino_acid_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 31%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/msalign_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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CMakeFiles/topmg.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp -[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/msalign_writer.cpp.o +[ 31%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +[ 31%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp +/build/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp: In function 'int main(int, char**)': +/build/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 40 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, + from /build/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:19: +/usr/include/i386-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; + | ^~~~~~~~~~~~~~~~~ +[ 31%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp -[ 53%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 54%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp -[ 55%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 55%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 33%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp +[ 33%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp -[ 55%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o 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CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_util.cpp.o +[ 33%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 55%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -[ 55%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 33%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 33%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 33%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge_gui.dir/src/console/topmerge_argument.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/console/topmerge_argument.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/console/topmerge_argument.cpp.o.d -o 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CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/neutral_loss_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp +[ 34%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp +[ 34%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/extend_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp +[ 34%] Building CXX object CMakeFiles/topfd.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topfd.dir/src/common/xml/xml_dom_parser.cpp.o.d 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-MF CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 34%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/prot_mod.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/prot_mod.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp +[ 34%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 34%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 34%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/prot_mod_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp +[ 34%] Building CXX object CMakeFiles/topfd.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp +[ 35%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o -c /build/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp +[ 35%] Building CXX object CMakeFiles/topfd.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp +[ 35%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp +[ 35%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include 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/build/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o.d -o 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CMakeFiles/topdiff_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp +[ 35%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 35%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/residue_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp +[ 35%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp +[ 38%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/trunc_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 38%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp +[ 38%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 38%] Building CXX object CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 38%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 38%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 38%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 38%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +[ 38%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +[ 38%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o.d -o 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 39%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 39%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp +[ 40%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp +[ 40%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 40%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 40%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o -MF 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-I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/alter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter.cpp +[ 40%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 40%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 40%] Building CXX object CMakeFiles/topmerge.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/alter_type.cpp.o 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CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 41%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 41%] Building CXX object CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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-I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/residue.cpp +[ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 41%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 41%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp +[ 41%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 41%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp +[ 42%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 42%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp +[ 42%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 42%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp +In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp +[ 42%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 42%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 42%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ 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CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o -MF 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-MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 42%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 42%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 42%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 42%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 42%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 42%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 42%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp +[ 42%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 42%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 42%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp +[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 42%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 43%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 45%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 45%] Building CXX object 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CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 45%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +[ 45%] Building CXX object CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter.cpp +[ 45%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 45%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 45%] Building CXX object CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp +[ 45%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 45%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -MF 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp +[ 45%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +[ 45%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 46%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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/build/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +[ 46%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 46%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 46%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +[ 46%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 46%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 46%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 46%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -MF 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 46%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore 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-I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 46%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 46%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 47%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 47%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ 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/build/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 47%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o.d -o 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 48%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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-I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 48%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 48%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 48%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 48%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 48%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 48%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o.d -o 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CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 48%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 48%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp +[ 48%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +[ 48%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp +[ 48%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 48%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 48%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 48%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF 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CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp +[ 48%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 48%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 48%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 48%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 48%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 48%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 49%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 49%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include 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-I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 51%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp +[ 51%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 51%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp +[ 52%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 52%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 52%] Building CXX object CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/merge/feature_prsm_reader.cpp +[ 52%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp +[ 53%] Building CXX object CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -MF 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-std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp +[ 53%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 53%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp +[ 53%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o -c /build/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp +[ 53%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp +[ 53%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 54%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +/build/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp: In function 'int main(int, char**)': +/build/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 40 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, + from /build/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:18: +/usr/include/i386-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; + | ^~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o -c 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/msalign_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp +[ 55%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp +[ 55%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include 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CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 55%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp -[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/spectrum_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 55%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 55%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 55%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -/usr/bin/c++ 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/neutral_loss_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp [ 55%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp +[ 55%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/prot_mod_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp [ 55%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -[ 55%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ 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/build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp +[ 55%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +/build/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp: In function 'int main(int, char**)': +/build/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 36 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, + from /build/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:18: +/usr/include/i386-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; + | ^~~~~~~~~~~~~~~~~ +[ 55%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o 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CMakeFiles/topconvert.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/prot_mod_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp [ 55%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/base_peak_type.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/base_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 55%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o -c /build/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.cpp [ 55%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp -[ 55%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 55%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 55%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 56%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/deconv_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp +[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/ptm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 56%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp [ 56%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/env_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 56%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 56%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o.d -o 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-DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp +[ 56%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/dp/co_table.cpp [ 56%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/residue_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp +[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/dp.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 56%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp -[ 56%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp -[ 56%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp -[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_a.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_a.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_a.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_a.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/dp/dp_a.cpp +[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/support_peak_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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CMakeFiles/topconvert.dir/src/common/base/support_peak_type_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/support_peak_type_base.cpp.o.d -o 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CMakeFiles/topmerge.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 56%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o -[ 56%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/extend_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 56%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -[ 56%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp -[ 56%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp -[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 56%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -[ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/activation.cpp -[ 56%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 56%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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CMakeFiles/topconvert.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/theo_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 56%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp -[ 56%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp +[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 56%] Building CXX object CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o -MF CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o -c /build/toppic-1.5.3+dfsg1/src/console/toppic_argument.cpp [ 57%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/msalign_writer.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/msalign_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp -[ 57%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ 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object CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp -[ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 57%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp -[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp -[ 57%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp +[ 57%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 57%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 57%] Building CXX object CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 57%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/dp/vertex.cpp +[ 57%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp [ 57%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp -[ 57%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 57%] Building CXX object 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/build/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 57%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF 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-mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp -[ 57%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp -[ 57%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp -[ 57%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 57%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/peak_util.cpp.o +[ 58%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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CMakeFiles/topmerge.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/prm_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp -[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp -[ 58%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 58%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 58%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp -[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion.cpp -[ 58%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 58%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 58%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp -[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 59%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 59%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o +[ 58%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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/build/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +[ 58%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o -MF 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 59%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp -[ 59%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 59%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/simple_msalign_reader.cpp.o +[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/file_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 58%] 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CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp +[ 58%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_util.cpp +[ 58%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 59%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 59%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 60%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 60%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 60%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o.d -o 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CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 60%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp -[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod.cpp -[ 60%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp -[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 60%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o.d -o 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp -[ 61%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 58%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp +[ 58%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/spectrum_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +[ 58%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp +[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 58%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp +[ 59%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 59%] Building CXX object CMakeFiles/topconvert.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 65%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF 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-std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp -[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 65%] Built target topfd -[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 65%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 65%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp -In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 65%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o +[ 60%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp +[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 65%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 65%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp -[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -[ 65%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o +[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 65%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 65%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp -[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp -[ 65%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/activation_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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/build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp -[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 66%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 66%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 66%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp -[ 66%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 66%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 66%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o +[ 61%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp -[ 66%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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/build/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp -[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 67%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/baseline_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 67%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp -[ 67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp +[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 67%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -MF 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 68%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o +[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ 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CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -c 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod.cpp +[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp +[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 68%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT 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CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 68%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp -[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -[ 69%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp -[ 69%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 69%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp -[ 69%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp -[ 69%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp -[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp -[ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp +[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 61%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp +[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/local/local_mng.cpp +[ 61%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp +[ 62%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp +[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp +[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ 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63%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 65%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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object CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp +[ 65%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp +[ 65%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_detect.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 65%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp +[ 65%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -9418,85 +9202,186 @@ /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 69%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp -[ 69%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp -[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o -MF 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp 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CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp -[ 71%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 71%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp -[ 71%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -[ 71%] Built target topconvert -[ 71%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 71%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp -[ 71%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 66%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 66%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 67%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 67%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp +[ 67%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp +[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 67%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +[ 67%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/bp_spec.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 67%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp +[ 67%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp +[ 67%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp +[ 67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 67%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 67%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp +[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 67%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +[ 67%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 68%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp +[ 68%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp +[ 68%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 69%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp +[ 69%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 69%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 69%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 70%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 70%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 70%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/graph/spec_graph.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -9508,22 +9393,578 @@ /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 72%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 72%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp -[ 72%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 72%] Building CXX object 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/build/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 72%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data_util.cpp +[ 70%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/frac_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 70%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/activation.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/activation.cpp.o -MF 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-mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 70%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ 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CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 70%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp +[ 70%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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-I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/base_data.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 70%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +[ 70%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 70%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/mod_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/mod_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 70%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/mod_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 70%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp +[ 71%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 71%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp +[ 71%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 71%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 71%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp +[ 73%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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73%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o 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/build/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp +[ 74%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 74%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp +[ 74%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp +[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +[ 74%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp +[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp +[ 74%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp +[ 74%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 74%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 74%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 75%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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-I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/ms_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp +[ 75%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 75%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 75%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +[ 75%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 75%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[ 75%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 75%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp +[ 75%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp +[ 75%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/tdgf/prob_peak.cpp +[ 75%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 75%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp +[ 75%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/spectrum_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp +[ 75%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp +[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp +[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 76%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/support_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include 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CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 76%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp +[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 76%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp +[ 76%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 76%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp +[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 76%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o.d 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CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp +[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +[ 76%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp +[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp +[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp +[ 77%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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/build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 77%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 77%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 77%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 78%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp +[ 78%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src 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/build/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp +[ 78%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o.d -o 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp +[ 80%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore 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/build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +[ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -MF 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CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp +[ 80%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 80%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore 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-I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 80%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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/build/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp +[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp +[ 82%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 82%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 82%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -9535,287 +9976,337 @@ /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp -[ 72%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 72%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o +[ 82%] Building CXX object CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp +/build/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp: In function 'int main(int, char**)': +/build/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 36 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, + from /build/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:18: +/usr/include/i386-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; + | ^~~~~~~~~~~~~~~~~ +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o -c /build/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp +[ 82%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 82%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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+[ 83%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp -[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 72%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 72%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 72%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 72%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 72%] Building CXX object CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -[ 72%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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-O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 73%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 73%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o +[ 83%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp -[ 73%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -MF 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/build/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp -[ 75%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o +[ 83%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 75%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 75%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 75%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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/build/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -[ 76%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 76%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp -[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o +[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp -[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter.cpp -[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp -[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp -[ 76%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o 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CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp -[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 76%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp -[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp -[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o +[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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-I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CXX object CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o 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-DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 76%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod.cpp +[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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/build/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -MF 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 85%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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/build/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +[ 86%] Built target topfd_gui +[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 87%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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/build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o +[ 88%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 89%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -9824,739 +10315,226 @@ /build/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 77%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp -[ 77%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topfd_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -c /build/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp -[ 77%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp -[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o 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/build/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 79%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF 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-Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 80%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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/build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 80%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp -[ 80%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp -[ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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/build/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp -[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -MF 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 81%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp -[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 81%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -[ 81%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 81%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp -[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp -[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 81%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -c /build/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o +[ 89%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o 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CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp -[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o -c /build/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp -[ 81%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp -In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp -[ 81%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp -[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp -[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 83%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp -[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 83%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/merge/feature_prsm.cpp -[ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o 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object CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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/build/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o +[ 89%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 85%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o 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CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp -[ 86%] Building CXX object CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topdiff_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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/build/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp +[ 90%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 86%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o +In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF 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-Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmerge_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o CMakeFiles/topmerge.dir/src/visual/xml_generator.cpp.o -o /build/toppic-1.5.3+dfsg1/bin/topmerge -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp -[ 89%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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/build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 91%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topconvert_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 90%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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/build/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp -[ 90%] Building CXX object CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp -[ 90%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp -[ 90%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp -[ 92%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o +[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp -[ 92%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -c /build/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp [ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp [ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui 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/build/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' +[ 93%] Built target topconvert [ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp [ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: @@ -10572,10 +10550,12 @@ | ^~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp [ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp [ 94%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 95%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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-I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp +[ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp [ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -[ 96%] Built target topmg [ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp [ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets 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object CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp [ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp [ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 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-I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp [ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp +[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext 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CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp +[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o +/usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/toppic_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -msse -mfpmath=sse -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp [ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o /usr/bin/c++ -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu -I/build/toppic-1.5.3+dfsg1 -I/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/topmg_gui_autogen/include -I/build/toppic-1.5.3+dfsg1/src -I/build/toppic-1.5.3+dfsg1/ext -I/usr/include/i386-linux-gnu/qt5 -I/usr/include/i386-linux-gnu/qt5/QtWidgets -I/usr/include/i386-linux-gnu/qt5/QtGui -I/usr/include/i386-linux-gnu/qt5/QtCore -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/toppic-1.5.3+dfsg1=. 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CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -o /build/toppic-1.5.3+dfsg1/bin/toppic -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts make[3]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' -[100%] Built target toppic +[100%] Built target toppic_gui make[2]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' dh_auto_test -O--buildsystem=cmake - rm -fr -- /tmp/dh-xdg-rundir-fsp4GpV5 + rm -fr -- /tmp/dh-xdg-rundir-fmtD8jUH create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake @@ -10854,7 +10874,7 @@ rm -fr -- debian/.debhelper/generated/toppic/ debian/toppic/ debian/tmp/ debian/.debhelper/generated/toppic-common/ debian/toppic-common/ dh_auto_install -O--buildsystem=cmake install -m0755 -d /build/toppic-1.5.3\+dfsg1/debian/tmp - cd obj-i686-linux-gnu && make -j16 install DESTDIR=/build/toppic-1.5.3\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j7 install DESTDIR=/build/toppic-1.5.3\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/toppic-1.5.3+dfsg1 -B/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -10878,758 +10898,758 @@ -- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/bin/topmerge_gui -- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/bin/topconvert -- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/SummedDistScore.tsv --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/XicCorrScore2.tsv --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/SummedIntScore.tsv --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/DistScore.tsv --- 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--- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/drawSvg.js.html --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/multiscan.js.html --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/coordinates_util.js.html --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/scripts --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/scripts/linenumber.js --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/scripts/prettify --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/scripts/prettify/Apache-License-2.0.txt --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/scripts/prettify/lang-css.js --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/scripts/prettify/prettify.js --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/drawMonoMassSpectrum.js.html --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/peakData.js.html +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/fonts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/fonts/OpenSans-Bold-webfont.eot +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/fonts/OpenSans-Italic-webfont.eot +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/fonts/OpenSans-Regular-webfont.eot +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/fonts/OpenSans-LightItalic-webfont.eot +-- Installing: 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/build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrumGraph/GraphFeatures.html -- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/commonFixedPtms.js.html --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/global.html --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/calculateprefixandsuffixmass.js.html --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/CalculateEmassAndDistribution.html --- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/aminoaciddistribution.js.html +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/molecularformulae.js.html +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/inspect/setvaluestohtml.js.html +-- 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/build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/sample_env_data.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/example.html +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/sample_proteoform.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/sample_peak_data.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/example/sample_ion_data.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/spectrum_view.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/draw_spectrum.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/draw_spectrum.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/spectrum_parameter.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/spectrum_parameter.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/spectrum_view/spectrum_view.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/util +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/util/types.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/util/common_ptm_list.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/util/types.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/util/format_util.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/util/format_util.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/sequence +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/sequence/mod.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/sequence/theoMass.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/sequence/mod.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/sequence/proteoform.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/sequence/proteoform.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/sequence/massShift.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/sequence/theoMass.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/sequence/massShift.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/save_image +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_prsm.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_image.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_spectrum.ts +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_spectrum.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/save_image/util.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/common/save_image/save_prsm.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/XicCorrScore2.tsv +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/IntScore.tsv +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/SummedCorrScore.tsv +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/DistScore.tsv +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/CorrScore.tsv +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/XicCorrScore1.tsv +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/SummedIntScore.tsv +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/SummedDistScore.tsv +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/promex/AbuScore.tsv +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/mass_table.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/unimod_ptm.xml +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/theo_patt.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/unimod_ptm.js +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/base_data/env_rescore_para.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/envcnn_models +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/envcnn_models/envcnn_2_block_model.json +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm2.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm2.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm1.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm0.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm1.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm0.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm15_ptm2.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm10_ptm0.txt +-- Installing: /build/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/p_value_table/ppm5_ptm1.txt make[1]: Leaving directory '/build/toppic-1.5.3+dfsg1/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/bin @@ -11660,17 +11680,17 @@ install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topdiff.1 debian/toppic/usr/share/man/man1/topdiff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/toppic.1 - mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1 - chmod 0644 -- debian/toppic/usr/share/man/man1/topfd.1 - mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 - chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1 mv debian/toppic/usr/share/man/man1/topdiff.1.dh-new debian/toppic/usr/share/man/man1/topdiff.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1 mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1 chmod 0644 -- debian/toppic/usr/share/man/man1/toppic.1 + mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1 + chmod 0644 -- debian/toppic/usr/share/man/man1/topfd.1 + mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 + chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake @@ -11711,27 +11731,27 @@ ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js dh_strip_nondeterminism -O--buildsystem=cmake Using 1667166702 as canonical time - Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_555555_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777620_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/png.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_555555_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_ffffff_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777620_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=cmake cd debian/toppic cd debian/toppic-common @@ -11746,11 +11766,11 @@ find debian/toppic-common ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake @@ -11759,61 +11779,21 @@ objcopy --compress-debug-sections debian/toppic/usr/lib/debug/.dwz/i386-linux-gnu/toppic.debug chmod 0644 -- debian/toppic/usr/lib/debug/.dwz/i386-linux-gnu/toppic.debug dh_strip -a -O--buildsystem=cmake - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f8 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f8/82ef4b5c636783807e56bd7092b0db2c961b5f.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f8/82ef4b5c636783807e56bd7092b0db2c961b5f.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f8/82ef4b5c636783807e56bd7092b0db2c961b5f.debug debian/toppic/usr/bin/topmg - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02/d83a4661a11a79afeb4f807639d5f56014f0ff.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02/d83a4661a11a79afeb4f807639d5f56014f0ff.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02/d83a4661a11a79afeb4f807639d5f56014f0ff.debug debian/toppic/usr/bin/topindex_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ab - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ab/374b7a301eadf3c8a2b8ef894dc8c65f6fd513.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ab/374b7a301eadf3c8a2b8ef894dc8c65f6fd513.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ab/374b7a301eadf3c8a2b8ef894dc8c65f6fd513.debug debian/toppic/usr/bin/toppic_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/17 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/17/19047384fb050c9fa30d81f0ae60a41a8ce9b0.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/17/19047384fb050c9fa30d81f0ae60a41a8ce9b0.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/17/19047384fb050c9fa30d81f0ae60a41a8ce9b0.debug debian/toppic/usr/bin/toppic - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5c - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5c/85614bc8e3b86b6e881b801f4722a36c5bf645.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5c/85614bc8e3b86b6e881b801f4722a36c5bf645.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5c/85614bc8e3b86b6e881b801f4722a36c5bf645.debug debian/toppic/usr/bin/topfd - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9/bad655a6a3b605c1271d01694c335eb26c8f17.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9/bad655a6a3b605c1271d01694c335eb26c8f17.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9/bad655a6a3b605c1271d01694c335eb26c8f17.debug debian/toppic/usr/bin/topmerge_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ca - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ca/a695891556388cb9c22a10148afcc096879808.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ca/a695891556388cb9c22a10148afcc096879808.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ca/a695891556388cb9c22a10148afcc096879808.debug debian/toppic/usr/bin/topmg_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topconvert debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f2/0ddfb4e9d109654a3264fbdd847719db745c5d.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f2/0ddfb4e9d109654a3264fbdd847719db745c5d.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topconvert objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f2/0ddfb4e9d109654a3264fbdd847719db745c5d.debug debian/toppic/usr/bin/topconvert + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/17 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/17/19047384fb050c9fa30d81f0ae60a41a8ce9b0.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/17/19047384fb050c9fa30d81f0ae60a41a8ce9b0.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/17/19047384fb050c9fa30d81f0ae60a41a8ce9b0.debug debian/toppic/usr/bin/toppic install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02/a4d5af0f20b19ea5ca22f712151c9f8c23a389.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02/a4d5af0f20b19ea5ca22f712151c9f8c23a389.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02/a4d5af0f20b19ea5ca22f712151c9f8c23a389.debug debian/toppic/usr/bin/topdiff - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/38 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/38/0f4a68d271f99a7abf6fb41bead1774a8ded67.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/38/0f4a68d271f99a7abf6fb41bead1774a8ded67.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/38/0f4a68d271f99a7abf6fb41bead1774a8ded67.debug debian/toppic/usr/bin/topdiff_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c2 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c2/9ab5c2ee5ead35ea542094ab132b88e3daab89.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c2/9ab5c2ee5ead35ea542094ab132b88e3daab89.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c2/9ab5c2ee5ead35ea542094ab132b88e3daab89.debug debian/toppic/usr/bin/topfd_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/09/f8488c32566f4cf5a9fda5805faa7edb263c6e.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/09/f8488c32566f4cf5a9fda5805faa7edb263c6e.debug @@ -11824,6 +11804,46 @@ chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/87/2156b0b76507d592b386d9af535f61e658e394.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/87/2156b0b76507d592b386d9af535f61e658e394.debug debian/toppic/usr/bin/topmerge + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c2 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c2/9ab5c2ee5ead35ea542094ab132b88e3daab89.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c2/9ab5c2ee5ead35ea542094ab132b88e3daab89.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c2/9ab5c2ee5ead35ea542094ab132b88e3daab89.debug debian/toppic/usr/bin/topfd_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02/d83a4661a11a79afeb4f807639d5f56014f0ff.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02/d83a4661a11a79afeb4f807639d5f56014f0ff.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/02/d83a4661a11a79afeb4f807639d5f56014f0ff.debug debian/toppic/usr/bin/topindex_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f8 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f8/82ef4b5c636783807e56bd7092b0db2c961b5f.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f8/82ef4b5c636783807e56bd7092b0db2c961b5f.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f8/82ef4b5c636783807e56bd7092b0db2c961b5f.debug debian/toppic/usr/bin/topmg + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ab + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ab/374b7a301eadf3c8a2b8ef894dc8c65f6fd513.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ab/374b7a301eadf3c8a2b8ef894dc8c65f6fd513.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ab/374b7a301eadf3c8a2b8ef894dc8c65f6fd513.debug debian/toppic/usr/bin/toppic_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/38 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/38/0f4a68d271f99a7abf6fb41bead1774a8ded67.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/38/0f4a68d271f99a7abf6fb41bead1774a8ded67.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/38/0f4a68d271f99a7abf6fb41bead1774a8ded67.debug debian/toppic/usr/bin/topdiff_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9/bad655a6a3b605c1271d01694c335eb26c8f17.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9/bad655a6a3b605c1271d01694c335eb26c8f17.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9/bad655a6a3b605c1271d01694c335eb26c8f17.debug debian/toppic/usr/bin/topmerge_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ca + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ca/a695891556388cb9c22a10148afcc096879808.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ca/a695891556388cb9c22a10148afcc096879808.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ca/a695891556388cb9c22a10148afcc096879808.debug debian/toppic/usr/bin/topmg_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5c + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5c/85614bc8e3b86b6e881b801f4722a36c5bf645.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5c/85614bc8e3b86b6e881b801f4722a36c5bf645.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5c/85614bc8e3b86b6e881b801f4722a36c5bf645.debug debian/toppic/usr/bin/topfd install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/toppic/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/toppic/usr/lib/debug/.dwz @@ -11835,40 +11855,40 @@ rm -f debian/toppic/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN - dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topmerge + dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topmg debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/topfd dh_installdeb -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN dh_gencontrol -O--buildsystem=cmake - install -m0755 -d debian/toppic-common/DEBIAN - echo misc:Depends= >> debian/toppic-common.substvars - echo misc:Pre-Depends= >> debian/toppic-common.substvars - dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -Pdebian/toppic-common install -m0755 -d debian/toppic/DEBIAN echo misc:Depends= >> debian/toppic.substvars echo misc:Pre-Depends= >> debian/toppic.substvars install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -Pdebian/.debhelper/toppic/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=toppic-dbgsym "-DDepends=toppic (= \${binary:Version})" "-DDescription=debug symbols for toppic" "-DBuild-Ids=02a4d5af0f20b19ea5ca22f712151c9f8c23a389 02d83a4661a11a79afeb4f807639d5f56014f0ff 09f8488c32566f4cf5a9fda5805faa7edb263c6e 1719047384fb050c9fa30d81f0ae60a41a8ce9b0 380f4a68d271f99a7abf6fb41bead1774a8ded67 5c85614bc8e3b86b6e881b801f4722a36c5bf645 872156b0b76507d592b386d9af535f61e658e394 ab374b7a301eadf3c8a2b8ef894dc8c65f6fd513 c29ab5c2ee5ead35ea542094ab132b88e3daab89 c9bad655a6a3b605c1271d01694c335eb26c8f17 caa695891556388cb9c22a10148afcc096879808 f20ddfb4e9d109654a3264fbdd847719db745c5d f882ef4b5c636783807e56bd7092b0db2c961b5f" -DSection=debug -UMulti-Arch -UReplaces -UBreaks + install -m0755 -d debian/toppic-common/DEBIAN + echo misc:Depends= >> debian/toppic-common.substvars + echo misc:Pre-Depends= >> debian/toppic-common.substvars + dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -Pdebian/toppic-common + chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -Pdebian/toppic - chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/toppic/DEBIAN/control dh_md5sums -O--buildsystem=cmake - install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN - cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/toppic-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + install -m0755 -d debian/toppic/DEBIAN + cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/toppic-common/DEBIAN/md5sums chmod 0644 -- debian/toppic/DEBIAN/md5sums install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN cd debian/.debhelper/toppic/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/toppic-common/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/toppic .. - dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root .. dpkg-deb --root-owner-group --build debian/toppic-common .. -dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.5.3+dfsg1-1_i386.deb'. + dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root .. dpkg-deb: building package 'toppic-common' in '../toppic-common_1.5.3+dfsg1-1_all.deb'. +dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.5.3+dfsg1-1_i386.deb'. dpkg-deb: building package 'toppic' in '../toppic_1.5.3+dfsg1-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../toppic_1.5.3+dfsg1-1_i386.buildinfo dpkg-genchanges --build=binary -O../toppic_1.5.3+dfsg1-1_i386.changes @@ -11877,12 +11897,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/18044/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18044/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/104745 and its subdirectories -I: Current time: Wed May 15 04:57:54 -12 2024 -I: pbuilder-time-stamp: 1715792274 +I: removing directory /srv/workspace/pbuilder/18044 and its subdirectories +I: Current time: Fri Apr 14 01:03:28 +14 2023 +I: pbuilder-time-stamp: 1681383808