Diff of the two buildlogs: -- --- b1/build.log 2024-01-08 04:55:55.157896543 +0000 +++ b2/build.log 2024-01-08 05:07:40.700055817 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jan 7 15:20:18 -12 2024 -I: pbuilder-time-stamp: 1704684018 +I: Current time: Mon Feb 10 01:19:06 +14 2025 +I: pbuilder-time-stamp: 1739099946 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./gatb-core_1.4.2+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.pLzztfNl/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.3O17X86r/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 2 16:51:18 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" @@ -39,49 +39,80 @@ dpkg-source: info: applying use-int-as-return-of-fgetc.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/141955/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/133337/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 9 11:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/133337/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/133337/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f793803e09d74292965041c40c48c88b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='141955' - PS1='# ' - PS2='> ' + INVOCATION_ID=f232fad07be4444998fb2a5dfba5e567 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=133337 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.esTnfu9B/pbuilderrc_RWQ7 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.esTnfu9B/b1 --logfile b1/build.log gatb-core_1.4.2+dfsg-6.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.esTnfu9B/pbuilderrc_bi7N --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.esTnfu9B/b2 --logfile b2/build.log gatb-core_1.4.2+dfsg-6.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.5.0-0.deb12.4-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.5.10-1~bpo12+1 (2023-11-23) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash @@ -141,7 +172,7 @@ -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 7 09:30 sh -> dash + lrwxrwxrwx 1 root root 9 Feb 9 11:19 sh -> /bin/bash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su @@ -167,7 +198,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/141955/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/133337/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -349,7 +380,7 @@ Get: 128 http://deb.debian.org/debian bullseye/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 libhdf5-dev amd64 1.10.6+repack-4+deb11u1 [2438 kB] Get: 130 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp-dev amd64 1.9.4-4 [25.4 kB] -Fetched 102 MB in 35s (2880 kB/s) +Fetched 102 MB in 1s (98.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17743 files and directories currently installed.) @@ -891,7 +922,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatb-core-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatb-core_1.4.2+dfsg-6_source.changes +I: user script /srv/workspace/pbuilder/133337/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/133337/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatb-core-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatb-core_1.4.2+dfsg-6_source.changes dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-6 dpkg-buildpackage: info: source distribution unstable @@ -979,7 +1014,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_auto_build -a - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core -B/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -992,558 +1027,560 @@ cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/depend.internal". Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/depend.internal". Scanning dependencies of target thirdparty_copy make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build -make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= +Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/depend.internal". +Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/depend.internal". make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/depend.internal". Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/depend.internal". -Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/depend.internal". -Dependee "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/depend.internal". cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF -Scanning dependencies of target gatbcore-static -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build -make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[ 1%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF/ -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp -[ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json/ -[ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp -[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp -[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 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-fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp -[ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -[ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 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CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp -[ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp +[ 0%] Built target thirdparty_copy Scanning dependencies of target gatbcore-dynamic make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o +Scanning dependencies of target gatbcore-static +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build +[ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o +[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o +[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o +[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o +[ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o +[ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o +[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o +[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o +[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o +[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o +[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat 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Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp -[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 54 | fread (&value, sizeof(value), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp -[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -cd 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp -[ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp -[ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp -[ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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-[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp -[ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o +[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp -[ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -cd 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CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp -[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c 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/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 54 | fread (&value, sizeof(value), 1, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp -[ 39%] Building CXX object 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+/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 54 | fread (&value, sizeof(value), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a 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+/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 54 | fread (&value, sizeof(value), 1, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 25%] Building CXX object 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src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp +[ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o +cd 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp +[ 86%] Linking CXX static library ../lib/None/libgatbcore.a +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 +/usr/bin/ar qc ../lib/None/libgatbcore.a CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o 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"/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools/CMakeFiles/leon.dir/depend.internal". -Scanning dependencies of target leon -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/build -make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[ 86%] Building CXX object tools/CMakeFiles/leon.dir/leon.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/leon.dir/leon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/leon.cpp -Scanning dependencies of target gatb-core-cppunit -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build -make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[ 86%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/bank/TestBank.cpp -[ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/bank/TestLeon.cpp -[ 88%] Linking CXX executable ../bin/None/leon -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/leon.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/leon.dir/leon.cpp.o -o ../bin/None/leon -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target leon make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/depend +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools/CMakeFiles/leon.dir/DependInfo.cmake --color= make[4]: Entering directory 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test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/bank/TestBank.cpp +[ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o +cd 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/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp: In function 'void sendEmail(gatb::core::tools::misc::IProperties*, gatb::core::tools::misc::IProperties*)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp:127:13: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 127 | ::system (cmd.str().c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -[ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o +[ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include 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CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[100%] Built target gatbcore-dynamic make[3]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' @@ -1588,7 +1623,7 @@ Nothing to do here make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_auto_install -O--sourcedirectory=gatb-core -Ngatb-core-testdata - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/reproducible-path/gatb-core-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/reproducible-path/gatb-core-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core -B/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1992,7 +2027,7 @@ dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgatbcore3/DEBIAN/symbols doesn't match completely debian/libgatbcore3.symbols.amd64 --- debian/libgatbcore3.symbols.amd64 (libgatbcore3_1.4.2+dfsg-6_amd64) -+++ dpkg-gensymbolszS7qUZ 2024-01-08 04:50:11.300587497 +0000 ++++ dpkg-gensymbolsvvy3wo 2025-02-09 11:30:06.301691911 +0000 @@ -8534,81 +8534,97 @@ _ZNSt13__future_base11_Task_stateISt5_BindIFZN4gatb4core8debruijn4impl10prepare_ufILi128EEEvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPNS3_4bank5IBankEiRiiiRmmEUliE_St12_PlaceholderILi1EEEESaIiEFviEE8_M_resetEv@Base 1.4.2 _ZNSt13__future_base11_Task_stateISt5_BindIFZN4gatb4core8debruijn4impl10prepare_ufILi128EEEvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPNS3_4bank5IBankEiRiiiRmmEUliE_St12_PlaceholderILi1EEEESaIiEFviEED0Ev@Base 1.4.2 @@ -2256,26 +2291,26 @@ _ZNSt27__uninitialized_default_n_1ILb0EE18__uninit_default_nIPN3dag11rank_vectorEmEET_S5_T0_@Base 1.4.2 _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN4json4JSONESt4lessIS5_ESaISt4pairIKS5_S7_EEEC1ISt17_Rb_tree_iteratorISC_EEET_SI_@Base 1.4.2 dh_shlibdeps -a -O--sourcedirectory=gatb-core -dpkg-shlibdeps: warning: symbol gzrewind used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Tcreate used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Aread used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol gzprintf used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Aget_space used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Dcreate2 used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflate used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol deflate used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT32_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol gzbuffer used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Tset_precision used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Pclose used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5T_C_S1_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol deflateEnd used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol pthread_attr_setstacksize used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5T_NATIVE_INT_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol deflateInit_ used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Fcreate used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Pset_shuffle used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Acreate2 used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: 58 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--sourcedirectory=gatb-core dh_gencontrol -O--sourcedirectory=gatb-core dh_md5sums -O--sourcedirectory=gatb-core dh_builddeb -O--sourcedirectory=gatb-core -dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb'. -dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.2+dfsg-6_amd64.deb'. +dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-6_amd64.deb'. +dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'gatb-core-testdata' in '../gatb-core-testdata_1.4.2+dfsg-6_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../gatb-core_1.4.2+dfsg-6_amd64.changes @@ -2284,12 +2319,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/133337/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/133337/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/141955 and its subdirectories -I: Current time: Sun Jan 7 16:55:53 -12 2024 -I: pbuilder-time-stamp: 1704689753 +I: removing directory /srv/workspace/pbuilder/133337 and its subdirectories +I: Current time: Mon Feb 10 01:30:46 +14 2025 +I: pbuilder-time-stamp: 1739100646